Open Access. Powered by Scholars. Published by Universities.®

Animal Sciences Commons

Open Access. Powered by Scholars. Published by Universities.®

Old Dominion University

Series

Discipline
Keyword
Publication Year
Publication

Articles 1 - 30 of 230

Full-Text Articles in Animal Sciences

The Impacts Of Anthropogenic Activity And Climate Change On The Formation Of Harmful Algal Blooms (Habs) And Its Ecological Consequence, Zhangxi Hu, Aifeng Li, Zhun Li, Margaret R. Mulholland Jan 2024

The Impacts Of Anthropogenic Activity And Climate Change On The Formation Of Harmful Algal Blooms (Habs) And Its Ecological Consequence, Zhangxi Hu, Aifeng Li, Zhun Li, Margaret R. Mulholland

OES Faculty Publications

No abstract provided.


Complex Dynamics Of Coral Gene Expression Responses To Low Ph Across Species, Veronica Z. Radice, Ana Martinez, Adina Paytan, Donald C. Potts, Daniel J. Barshis Jan 2024

Complex Dynamics Of Coral Gene Expression Responses To Low Ph Across Species, Veronica Z. Radice, Ana Martinez, Adina Paytan, Donald C. Potts, Daniel J. Barshis

Biological Sciences Faculty Publications

Coral capacity to tolerate low pH affects coral community composition and, ultimately, reef ecosystem function. Low pH submarine discharges (‘Ojo’; Yucatán, México) represent a natural laboratory to study plasticity and acclimatization to low pH in relation to ocean acidification. A previous >2‐year coral transplant experiment to ambient and low pH common garden sites revealed differential survivorship across species and sites, providing a framework to compare mechanistic responses to differential pH exposures. Here, we examined gene expression responses of transplants of three species of reef‐building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities …


Integrating Human Dimensions In Decadal-Scale Prediction For Marine Social Ecological Systems: Lighting The Grey Zone, Jess Melbourne-Thomas, Desiree Tommasi, Marion Gehlen, Eugene J. Murphy, Jennifer Beckensteiner, Francisco Bravo, Tyler D. Eddy, Mibu Fischer, Elizabeth Fulton, Mayya Gogina, Eileen Hofmann, Maya Ito, Sara Mynott, Kelly Ortega-Cisneros, Anna N. Osiecka, Mark R. Payne, Romeo Saldívar-Lucio, Kim J.N. Scherrer Jan 2023

Integrating Human Dimensions In Decadal-Scale Prediction For Marine Social Ecological Systems: Lighting The Grey Zone, Jess Melbourne-Thomas, Desiree Tommasi, Marion Gehlen, Eugene J. Murphy, Jennifer Beckensteiner, Francisco Bravo, Tyler D. Eddy, Mibu Fischer, Elizabeth Fulton, Mayya Gogina, Eileen Hofmann, Maya Ito, Sara Mynott, Kelly Ortega-Cisneros, Anna N. Osiecka, Mark R. Payne, Romeo Saldívar-Lucio, Kim J.N. Scherrer

CCPO Publications

The dynamics of marine systems at decadal scales are notoriously hard to predict-hence references to this timescale as the "grey zone" for ocean prediction. Nevertheless, decadal-scale prediction is a rapidly developing field with an increasing number of applications to help guide ocean stewardship and sustainable use of marine environments. Such predictions can provide industry and managers with information more suited to support planning and management over strategic timeframes, as compared to seasonal forecasts or long-term (century-scale) predictions. The most significant advances in capability for decadal-scale prediction over recent years have been for ocean physics and biogeochemistry, with some notable advances …


Seasonal Habitat Preference And Foraging Behaviour Of Post-Moult Weddell Seals In The Western Ross Sea, Kimberly T. Goetz, Michael S. Dinniman, Luis A. Hückstädt, Patrick W. Robinson, Michelle R. Shero, Jennifer M. Burns, Eileen E. Hofmann, Sharon E. Stammerjohn, Elliott L. Hazen, David G. Ainley, Daniel P. Costa Jan 2023

Seasonal Habitat Preference And Foraging Behaviour Of Post-Moult Weddell Seals In The Western Ross Sea, Kimberly T. Goetz, Michael S. Dinniman, Luis A. Hückstädt, Patrick W. Robinson, Michelle R. Shero, Jennifer M. Burns, Eileen E. Hofmann, Sharon E. Stammerjohn, Elliott L. Hazen, David G. Ainley, Daniel P. Costa

CCPO Publications

Weddell seals (Leptonychotes weddellii) are important predators in the Southern Ocean and are among the best-studied pinnipeds on Earth, yet much still needs to be learned about their year-round movements and foraging behaviour. Using biologgers, we tagged 62 post-moult Weddell seals in McMurdo Sound and vicinity between 2010 and 2012. Generalized additive mixed models were used to (i) explain and predict the probability of seal presence and foraging behaviour from eight environmental variables, and (ii) examine foraging behaviour in relation to dive metrics. Foraging probability was highest in winter and lowest in summer, and foraging occurred mostly in …


Potential Repercussions Of Offshore Wind Energy Development In The Northeast United States For The Atlantic Surfclam Survey And Population Assessment, Sarah Borsetti, Daphne M. Munroe, Andrew M. Scheld, Eric N. Powell, John M. Klinck, Eileen E. Hofmann Jan 2023

Potential Repercussions Of Offshore Wind Energy Development In The Northeast United States For The Atlantic Surfclam Survey And Population Assessment, Sarah Borsetti, Daphne M. Munroe, Andrew M. Scheld, Eric N. Powell, John M. Klinck, Eileen E. Hofmann

CCPO Publications

The Atlantic surfclam Spisula solidissima fishery, which spans the U.S. Northeast continental shelf, is among the most exposed to offshore wind energy development impacts because of the overlap of fishing grounds with wind energy lease areas, the hydraulic dredges used by the fishing vessels, and the location of vessel home ports relative to the fishing grounds. The Atlantic surfclam federal assessment survey is conducted using a commercial fishing vessel in locations that overlap with the offshore wind energy development. Once wind energy turbines, cables, and scour protection are installed, survey operations within wind energy lease areas may be curtailed or …


Interactive Effects Of Climate Change-Induced Range Shifts And Wind Energy Development On Future Economic Conditions Of The Atlantic Surfclam Fishery, Stephanie Stromp, Andrew M. Scheld, John M. Klinck, Daphne M. Munroe, Eric N. Powell, Roger Mann, Sarah Borsetti, Eileen E. Hofmann Jan 2023

Interactive Effects Of Climate Change-Induced Range Shifts And Wind Energy Development On Future Economic Conditions Of The Atlantic Surfclam Fishery, Stephanie Stromp, Andrew M. Scheld, John M. Klinck, Daphne M. Munroe, Eric N. Powell, Roger Mann, Sarah Borsetti, Eileen E. Hofmann

CCPO Publications

Rising water temperatures along the northeastern U.S. continental shelf have resulted in an offshore range shift of the Atlantic surfclam Spisula solidissima to waters still occupied by ocean quahogs Arctica islandica. Fishers presently are prohibited from landing both Atlantic surfclams and ocean quahogs in the same catch, thus limiting fishing to locations where the target species can be sorted on deck. Wind energy development on and around the fishing grounds will further restrict the fishery. A spatially explicit model of the Atlantic surfclam fishery (Spatially Explicit Fishery Economics Simulator) has the ability to simulate the consequences of fishery displacement …


A Growth Model For Arctica Islandica: The Performance Of Tanaka And The Temptation Of Von Bertalanffy—Can The Two Coexist?, John M. Klinck, Eric N. Powell, Kathleen M. Hemeon, Jillian R. Sower, Daniel R. Hennen Jan 2023

A Growth Model For Arctica Islandica: The Performance Of Tanaka And The Temptation Of Von Bertalanffy—Can The Two Coexist?, John M. Klinck, Eric N. Powell, Kathleen M. Hemeon, Jillian R. Sower, Daniel R. Hennen

CCPO Publications

Organisms increase in size over time (age) due to excess assimilation over metabolic (respiration) energy demands. Most organisms reach a maximum size with increasing age as gain and loss balance. The von Bertalanffy length-at-age relationship, which is commonly used in fishery assessment calculations, imposes such a maximum size. However, some fished species, such as ocean quahogs, Arctica islandica, are long lived and continue to grow at old age. The Tanaka age-at-length relationship has continued growth at old age, but is rarely used in stock assessment models. A modified form of the von Bertalanffy model is presented, which mimics the …


The Effects Of Chemical Secretions By Millipedes On Anting Behaviour In Birds And Other Animals, Theo Fraser Jan 2023

The Effects Of Chemical Secretions By Millipedes On Anting Behaviour In Birds And Other Animals, Theo Fraser

2023 REYES Proceedings

Birds perform a behavior known as anting in which they actively rub ants in their feathers or allow ants to crawl over their bodies. Several hypotheses have been proposed to explain this behavior, but no one hypothesis can account for all cases of anting that have been observed. Anting behavior has been recorded in species other than birds including primates, and substances other than ants such as millipedes may be used. This paper explores the use of millipedes in anting by birds, capuchin monkeys and lemurs. The three hypotheses supported by these studies include 1) anting serves as food preparation …


The Southern Ocean Ecosystem Affects The Entire World, Eugene J. Murphy, Nadine M. Johnston, Eileen E. Hofmann, Richard A. Phillips, Jennifer E. Jackson, Andrew J. Constable Jan 2023

The Southern Ocean Ecosystem Affects The Entire World, Eugene J. Murphy, Nadine M. Johnston, Eileen E. Hofmann, Richard A. Phillips, Jennifer E. Jackson, Andrew J. Constable

CCPO Publications

The Southern Ocean, which flows around the Antarctic continent, is home to vast numbers of unique and remarkable animals, including penguins, albatrosses, petrels, seals, and whales. The ocean bursts into life every spring, fueling a summer feeding and breeding frenzy. During the dark winter months, there is little food and life is very harsh. Human activities such as fishing and pollution are affecting this ecosystem, as is climate change. These ecosystem changes matter beyond the Southern Ocean! Ocean currents carry nutrients and organisms into and out of the Southern Ocean. Many marine mammals and seabirds swim or fly in and …


A Single-Cell Atlas Of Bovine Skeletal Muscle Reveals Mechanisms Regulating Intramuscular Adipogenesis And Fibrogenesis, Leshan Wang, Peidong Gao, Chaoyang Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth Mcmillin, Stephanie Oprescu, Shihuan Kuang, Xing Fu Jan 2023

A Single-Cell Atlas Of Bovine Skeletal Muscle Reveals Mechanisms Regulating Intramuscular Adipogenesis And Fibrogenesis, Leshan Wang, Peidong Gao, Chaoyang Li, Qianglin Liu, Zeyang Yao, Yuxia Li, Xujia Zhang, Jiangwen Sun, Constantine Simintiras, Matthew Welborn, Kenneth Mcmillin, Stephanie Oprescu, Shihuan Kuang, Xing Fu

Computer Science Faculty Publications

Background

Intramuscular fat (IMF) and intramuscular connective tissue (IMC) are often seen in human myopathies and are central to beef quality. The mechanisms regulating their accumulation remain poorly understood. Here, we explored the possibility of using beef cattle as a novel model for mechanistic studies of intramuscular adipogenesis and fibrogenesis.

Methods

Skeletal muscle single-cell RNAseq was performed on three cattle breeds, including Wagyu (high IMF), Brahman (abundant IMC but scarce IMF), and Wagyu/Brahman cross. Sophisticated bioinformatics analyses, including clustering analysis, gene set enrichment analyses, gene regulatory network construction, RNA velocity, pseudotime analysis, and cell-cell communication analysis, were performed to elucidate …


Fitting Time Series Models To Fisheries Data To Ascertain Age, Kathleen S. Kirch, Norou Diawara, Cynthia M. Jones Jan 2023

Fitting Time Series Models To Fisheries Data To Ascertain Age, Kathleen S. Kirch, Norou Diawara, Cynthia M. Jones

OES Faculty Publications

The ability of government agencies to assign accurate ages of fish is important to fisheries management. Accurate ageing allows for most reliable age-based models to be used to support sustainability and maximize economic benefit. Assigning age relies on validating putative annual marks by evaluating accretional material laid down in patterns in fish ear bones, typically by marginal increment analysis. These patterns often take the shape of a sawtooth wave with an abrupt drop in accretion yearly to form an annual band and are typically validated qualitatively. Researchers have shown key interest in modeling marginal increments to verify the marks do, …


Can The Food Preparation Hypothesis Account For Anting Behavior In Birds?, Ella Brady Jan 2023

Can The Food Preparation Hypothesis Account For Anting Behavior In Birds?, Ella Brady

2023 REYES Proceedings

This report discusses the food preparation hypothesis, one of several proposed hypotheses to explain anting behavior in birds. A brief review of the theory’s history and development, as well as an assessment of evidence for and against such a function of anting, is provided. Although there are indeed experimental data supporting food preparation as the purpose of anting behavior, there is also conflicting evidence which complicates the theory. Ultimately, it is suggested that food preparation is a secondary function of anting – a pleasant but latent “side effect” achieved alongside the behavior’s primary purpose, which is still unknown.


Hypotheses Related To Anting By Birds, Helena Flores Jan 2023

Hypotheses Related To Anting By Birds, Helena Flores

2023 REYES Proceedings

“Anting” is a widespread behavior among bird species and mammals. Due to the various characteristics of this behavior, numerous hypotheses have been proposed to explain it. This behavior can be classified as “active”, in which birds take a bill full of ants and rub them into their feathers, or “passive” when birds let ants wander through their plumage. The hypotheses state that anting may be performed as an (1) antiparasitic behavior, for (2) feather grooming, as a way of (3) food preparation or to (4) decrease skin irritation during molt, even as a (5) sensory stimulation tool. This review compiles …


A Multi-Isotope Approach Reveals Seasonal Variation In The Reliance On Marine Resources, Production Of Metabolic Water, And Ingestion Of Seawater By Two Species Of Coastal Passerine To Maintain Water Balance, Lucas Navarrete, Nico Lübcker, Felipe Alvarez, Roberto Nespolo, Juan Carlos Sanchez-Hernandez, Karin Maldonado, Zachary D. Sharp, John P. Whiteman, Seth D. Newsome, Pablo Sabat Jan 2023

A Multi-Isotope Approach Reveals Seasonal Variation In The Reliance On Marine Resources, Production Of Metabolic Water, And Ingestion Of Seawater By Two Species Of Coastal Passerine To Maintain Water Balance, Lucas Navarrete, Nico Lübcker, Felipe Alvarez, Roberto Nespolo, Juan Carlos Sanchez-Hernandez, Karin Maldonado, Zachary D. Sharp, John P. Whiteman, Seth D. Newsome, Pablo Sabat

Biological Sciences Faculty Publications

Tracing how free-ranging organisms interact with their environment to maintain water balance is a difficult topic to study for logistical and methodological reasons. We use a novel combination of triple-oxygen stable isotope analyses of water extracted from plasma (δ16O, δ17O, δ18O) and bulk tissue carbon (δ13C) and nitrogen (δ15N) isotopes of feathers and blood to estimate the proportional contribution of marine resources, seawater, and metabolic water used by two species of unique songbirds (genus Cinclodes) to maintain their water balance in a seasonal coastal environment. We …


Estimating The Distribution Of Oryzomys Palustris, A Potential Key Host In Expanding Rickettsial Tick-Borne Disease Risk, Catherine A. Lippi, Samuel Canfield, Christina Espada, Holly D. Gaff, Sadie J. Ryan Jan 2023

Estimating The Distribution Of Oryzomys Palustris, A Potential Key Host In Expanding Rickettsial Tick-Borne Disease Risk, Catherine A. Lippi, Samuel Canfield, Christina Espada, Holly D. Gaff, Sadie J. Ryan

Biological Sciences Faculty Publications

Increasingly, geographic approaches to assessing the risk of tick-borne diseases are being used to inform public health decision-making and surveillance efforts. The distributions of key tick species of medical importance are often modeled as a function of environmental factors, using niche modeling approaches to capture habitat suitability. However, this is often disconnected from the potential distribution of key host species, which may play an important role in the actual transmission cycle and risk potential in expanding tick-borne disease risk. Using species distribution modeling, we explore the potential geographic range of Oryzomys palustris, the marsh rice rat, which has been …


Lifetime Inclusive Fitness Effects Of Cooperative Polygamy In The Acorn Woodpecker, Walter D. Koenig, Sahas Barve, Joseph Haydock, Eric L. Walters Jan 2023

Lifetime Inclusive Fitness Effects Of Cooperative Polygamy In The Acorn Woodpecker, Walter D. Koenig, Sahas Barve, Joseph Haydock, Eric L. Walters

Biological Sciences Faculty Publications

Although over 50 y have passed since W. D. Hamilton articulated kin selection and inclusive fitness as evolutionary explanations for altruistic behavior, quantifying inclusive fitness continues to be challenging. Here, using 30 y of data and two alternative methods, we outline an approach to measure lifetime inclusive fitness effects of cooperative polygamy (mate-sharing or cobreeding) in the cooperatively breeding acorn woodpecker Melanerpes formicivorus. For both sexes, the number of offspring (observed direct fitness) declined while the number of young parented by related cobreeders (observed indirect fitness effect) increased with cobreeding coalition size. Combining these two factors, the observed inclusive …


Unraveling A Paradox Of Habitat Relationships: Scale-Dependent Drivers Of Temporal Occupancy-Abundance Relationships In A Cooperatively Breeding Bird, Natasha D.G. Hagemeyer, Mario B. Pesendorfer, Walter D. Koenig, Eric L. Walters Jan 2023

Unraveling A Paradox Of Habitat Relationships: Scale-Dependent Drivers Of Temporal Occupancy-Abundance Relationships In A Cooperatively Breeding Bird, Natasha D.G. Hagemeyer, Mario B. Pesendorfer, Walter D. Koenig, Eric L. Walters

Biological Sciences Faculty Publications

Context Spatial occupancy and local abundance of species often positively covary, but the mechanisms driving this widespread relationship are poorly understood. Resource dynamics and habitat changes have been suggested as potential drivers, but long-term studies relating them to abundance and occupancy are rare. In this 34-year study of acorn woodpeckers (Melanerpes formicivorus), a cooperatively breeding species, we observed a paradoxical response to changes in habitat composition: despite a reduction in the availability of high-quality breeding habitat, the population increased considerably.

Objectives We investigated the role of annual variation in food availability and long-term changes in habitat composition as predictors …


Use Of Amino Acid Isotope Analysis To Investigate Capital Versus Income Breeding Strategies In Migratory Avian Species, Nico Lübcker, John P. Whiteman, Oliver N. Shipley, Keith A. Hobson, Seth D. Newsome Jan 2023

Use Of Amino Acid Isotope Analysis To Investigate Capital Versus Income Breeding Strategies In Migratory Avian Species, Nico Lübcker, John P. Whiteman, Oliver N. Shipley, Keith A. Hobson, Seth D. Newsome

Biological Sciences Faculty Publications

1. Income and capital breeding represent opposing ends of a continuum of reproductive strategies. Quantifying nutrient allocation to reproduction is challenging, but recent advances in compound-specific stable isotope analysis hold promise for tracing the source of individual compounds allocated to reproduction.

2. Here, we describe a novel approach of using measured carbon (δ13C) and nitrogen (δ15N) isotope values of individual amino acids (AAs) in pectoral muscle of egg-laying females and egg yolk as a useful tool to quantify the reliance on income versus capital breeding in migrating species. We used white-fronted (Anser albifrons frontalis), lesser snow (A. …


Biodiversity Of Philippine Marine Fishes: A Dna Barcode Reference Library Based On Voucher Specimens, Katherine E. Bemis, Matthew G. Girard, Mudjekeewis D. Santos, Kent E. Carpenter, Jonathan R. Deeds, Diane E. Pitassy, Nicko Amor L. Flores, Elizabeth S. Hunter, Amy C. Driskell, Kenneth S. Macdonald Iii, Lee A. Weigt, Jeffrey T. Williams Jan 2023

Biodiversity Of Philippine Marine Fishes: A Dna Barcode Reference Library Based On Voucher Specimens, Katherine E. Bemis, Matthew G. Girard, Mudjekeewis D. Santos, Kent E. Carpenter, Jonathan R. Deeds, Diane E. Pitassy, Nicko Amor L. Flores, Elizabeth S. Hunter, Amy C. Driskell, Kenneth S. Macdonald Iii, Lee A. Weigt, Jeffrey T. Williams

Biological Sciences Faculty Publications

Accurate identification of fishes is essential for understanding their biology and to ensure food safety for consumers. DNA barcoding is an important tool because it can verify identifications of both whole and processed fishes that have had key morphological characters removed (e.g., filets, fish meal); however, DNA reference libraries are incomplete, and public repositories for sequence data contain incorrectly identified sequences. During a nine-year sampling program in the Philippines, a global biodiversity hotspot for marine fishes, we developed a verified reference library of cytochrome c oxidase subunit I (COI) sequences for 2,525 specimens representing 984 species. Specimens were primarily purchased …


Territory Inheritance And The Evolution Of Cooperative Breeding In The Acorn Woodpecker, Walter D. Koenig, Joseph Haydock, Hannah L. Dugdale, Eric L. Walters Jan 2023

Territory Inheritance And The Evolution Of Cooperative Breeding In The Acorn Woodpecker, Walter D. Koenig, Joseph Haydock, Hannah L. Dugdale, Eric L. Walters

Biological Sciences Faculty Publications

There are two main hypotheses for why offspring in cooperatively breeding taxa delay dispersal and remain on their natal territory rather than disperse. First, ecological constraints may force offspring to remain on their natal territory until a reproductive opportunity presents itself in an otherwise saturated habitat. Alternatively, delaying dispersal and helping kin may increase an offspring's inclusive fitness. One means by which offspring might enhance their direct fitness by delaying dispersal is by inheriting breeding status on their natal territory. Such territory inheritance regularly occurs in acorn woodpeckers, Melanerpes formicivorus, a species whose social groups consist of a cooperatively …


Marine Heatwaves Modulate The Genotypic And Physiological Responses Of Reef-Building Corals To Subsequent Heat Stress, Kristen T. Brown, Amatzia Genin, Matheus A. Mello-Athayde, Ellie Bergstrom, Adriana Campili, Aaron Chai, Sophie G. Dove, Maureen Ho, Devin Rowell, Eugenia M. Sampayo, Veronica Z. Radice Jan 2023

Marine Heatwaves Modulate The Genotypic And Physiological Responses Of Reef-Building Corals To Subsequent Heat Stress, Kristen T. Brown, Amatzia Genin, Matheus A. Mello-Athayde, Ellie Bergstrom, Adriana Campili, Aaron Chai, Sophie G. Dove, Maureen Ho, Devin Rowell, Eugenia M. Sampayo, Veronica Z. Radice

Biological Sciences Faculty Publications

Back-to-back marine heatwaves in 2016 and 2017 resulted in severe coral bleaching and mortality across the Great Barrier Reef (GBR). Encouragingly, some corals that survived these events exhibit increased bleaching resistance and may represent thermally tolerant populations that can better cope with ocean warming. Using the GBR as a natural laboratory, we investigated whether a history of minimal (Heron Island) or severe (Lizard Island) coral bleaching in 2016 and 2017 equates to stress tolerance in a successive heatwave (2020). We examined the genetic diversity, physiological performance, and trophic plasticity of juvenile (<10 cm) and adult (>25 cm) corals of two common genera ( …


Quantifying Antarctic Krill Connectivity Across The West Antarctic Peninsula And Its Role In Large-Scale Pygoscelis Penguin Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch Jan 2023

Quantifying Antarctic Krill Connectivity Across The West Antarctic Peninsula And Its Role In Large-Scale Pygoscelis Penguin Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of krill may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis spp. penguins that breed along the WAP during the austral summer. Antarctic krill are also heavily fished commercially; therefore, understanding population connectivity of krill is critical to effective management. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across …


Monitoring Extinction Risk And Threats Of The World's Fishes Based On The Sampled Red List Index, Rafael Miranda, Imanol Miqueleiz, William Darwall, Catherine Sayer, Nicholas K. Dulvy, Kent E. Carpenter, Beth Polidoro, Nadia Dewhurst-Richman, Caroline Pollock, Craig Hilton-Taylor, Robin Freeman, Ben Collen, Monika Böhm Mar 2022

Monitoring Extinction Risk And Threats Of The World's Fishes Based On The Sampled Red List Index, Rafael Miranda, Imanol Miqueleiz, William Darwall, Catherine Sayer, Nicholas K. Dulvy, Kent E. Carpenter, Beth Polidoro, Nadia Dewhurst-Richman, Caroline Pollock, Craig Hilton-Taylor, Robin Freeman, Ben Collen, Monika Böhm

Biological Sciences Faculty Publications

Global biodiversitytargets require us to identify species at risk of extinction and quantify status and trends of biodiversity. The Red List Index (RLI) tracks trends in the conservation status of entire species groups over time by monitoring changes in categories assigned to species. Here, we calculate this index for the world’s fishes in 2010, using a sampled approach to the RLI based on a randomly selected sample of 1,500 species, and also present RLI splits for freshwater and marine systems separately. We further compare specific traits of a worldwide fish list to our sample to assess its representativeness. Overall, 15.1% …


The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 2. Assessing Economic Impacts, Andrew M. Scheld, Jennifer Beckensteiner, Daphne M. Munroe, Eric N. Powell, Sarah Borsetti, Eileen E. Hofmann, John M. Klinck Jan 2022

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 2. Assessing Economic Impacts, Andrew M. Scheld, Jennifer Beckensteiner, Daphne M. Munroe, Eric N. Powell, Sarah Borsetti, Eileen E. Hofmann, John M. Klinck

CCPO Publications

The Atlantic surfclam (Spisula solidissima) fishery generates approximately USD 30 million in landings revenues annually, distributed across ports throughout the US Mid-Atlantic and Northeast. Overlap between areas of Atlantic surfclam harvests and offshore wind energy leasing make the fishery vulnerable to exclusion and effort displacement as development expands in the region. An existing integrated bioeconomic agent-based model, including spatial dynamics in Atlantic surfclam stock biology, heterogeneous captain behaviour, and federal management processes, was extended to incorporate costs and revenues for fishing vessels and processors and used to evaluate the potential economic effects of offshore wind development on the …


A Subsurface Eddy Associated With A Submarine Canyon Increases Availability And Delivery Of Simulated Antarctic Krill To Penguin Foraging Regions, K. Hudson, M. J. Oliver, J. Kohut, Michael S. Dinniman, John M. Klinck, M. A. Cimino, K. S. Bernard, H. Statscewich, W. Fraser Jan 2022

A Subsurface Eddy Associated With A Submarine Canyon Increases Availability And Delivery Of Simulated Antarctic Krill To Penguin Foraging Regions, K. Hudson, M. J. Oliver, J. Kohut, Michael S. Dinniman, John M. Klinck, M. A. Cimino, K. S. Bernard, H. Statscewich, W. Fraser

OES Faculty Publications

The distribution of marine zooplankton depends on both ocean currents and swimming behavior. Many zooplankton perform diel vertical migration (DVM) between the surface and subsurface, which can have different current regimes. If concentration mechanisms, such as fronts or eddies, are present in the subsurface, they may impact zooplankton near-surface distributions when they migrate to near-surface waters. A subsurface, retentive eddy within Palmer Deep Canyon (PDC), a submarine canyon along the West Antarctic Peninsula (WAP), retains diurnal vertically migrating zooplankton in previous model simulations. Here, we tested the hypothesis that the presence of the PDC and its associated subsurface eddy increases …


A Trait‐Based Framework For Assessing The Vulnerability Of Marine Species To Human Impacts, Nathalie Butt, Benjamin S. Halpern, Casey S. O'Hara, A. Louise Allcock, Beth Polidoro, Samantha Sherman, Maria Byrne, Charles Birkeland, Ross G. Dwyer, Melanie Frazier, Bradley K. Woodworth, Claudia P. Arango, Michael J. Kingsford, Vinay Udyawer, Pat Hutchings, Elliot Scanes, Emily Jane Mcclaren, Sara M. Maxwell, Guillermo Diaz-Pulido, Emma Dugan, Blake Alexander Simmons, Amelia S. Wenger, Christi Linardich, Carissa J. Klein Jan 2022

A Trait‐Based Framework For Assessing The Vulnerability Of Marine Species To Human Impacts, Nathalie Butt, Benjamin S. Halpern, Casey S. O'Hara, A. Louise Allcock, Beth Polidoro, Samantha Sherman, Maria Byrne, Charles Birkeland, Ross G. Dwyer, Melanie Frazier, Bradley K. Woodworth, Claudia P. Arango, Michael J. Kingsford, Vinay Udyawer, Pat Hutchings, Elliot Scanes, Emily Jane Mcclaren, Sara M. Maxwell, Guillermo Diaz-Pulido, Emma Dugan, Blake Alexander Simmons, Amelia S. Wenger, Christi Linardich, Carissa J. Klein

Biological Sciences Faculty Publications

Marine species and ecosystems are widely affected by anthropogenic stressors, ranging from pollution and fishing to climate change. Comprehensive assessments of how species and ecosystems are impacted by anthropogenic stressors are critical for guiding conservation and management investments. Previous global risk or vulnerability assessments have focused on marine habitats, or on limited taxa or specific regions. However, information about the susceptibility of marine species across a range of taxa to different stressors everywhere is required to predict how marine biodiversity will respond to human pressures. We present a novel framework that uses life-history traits to assess species’ vulnerability to a …


Calcification, Dissolution And Test Properties Of Modern Planktonic Foraminifera From The Central Atlantic Ocean, Stergios D. Zarkogiannis, Shinya Iwasaki, James William Buchanan Rae, Matthew W. Schmidt, P. Graham Mortyn, George Kontakiotis, Jennifer E. Hertzberg, Rosalind E.M. Rickaby Jan 2022

Calcification, Dissolution And Test Properties Of Modern Planktonic Foraminifera From The Central Atlantic Ocean, Stergios D. Zarkogiannis, Shinya Iwasaki, James William Buchanan Rae, Matthew W. Schmidt, P. Graham Mortyn, George Kontakiotis, Jennifer E. Hertzberg, Rosalind E.M. Rickaby

OES Faculty Publications

The mass of well-preserved calcite in planktonic foraminifera shells provides an indication of the calcification potential of the surface ocean. Here we report the shell weight of 8 different abundant planktonic foraminifera species from a set of core-top sediments along the Mid-Atlantic Ridge. The analyses showed that near the equator, foraminifera shells of equivalent size weigh on average 1/3 less than those from the middle latitudes. The carbonate preservation state of the samples was assessed by high resolution X-ray microcomputed tomographic analyses of Globigerinoides ruber and Globorotalia truncatulinoides specimens. The specimen preservation was deemed good and does not overall explain …


Frameless-Finding And Refining A Sampling Frame For Surveying Recreational Fisheries: Lessons From Estimating Swedish Harvest Of Western Baltic Cod, Hege Sande, Nuno Prista, Annica De Groote, Michele Casini, Cynthia Jones, Andreas Sundelöf Jan 2022

Frameless-Finding And Refining A Sampling Frame For Surveying Recreational Fisheries: Lessons From Estimating Swedish Harvest Of Western Baltic Cod, Hege Sande, Nuno Prista, Annica De Groote, Michele Casini, Cynthia Jones, Andreas Sundelöf

OES Faculty Publications

To achieve sustainable fisheries, advice to management should be based on reliable science and unbiased data. Attaining quality data (i.e. precise and unbiased) on recreational fishing can be challenging, particularly when prior knowledge of the sector is limited and a proper sample frame of recreational fishers or vessels does not exist. In this study, a registry of access points was constructed for the Swedish south–west coast and used as a spatial sample frame in determining both effort and catches of the private boat fishery. Sampling dates, times for sampling, and access points visited were selected using probabilistic methods, ensuring unbiased …


Subsurface Eddy Facilitates Retention Of Simulated Diel Vertical Migrators In A Biological Hotspot, K. Hudson, M. J. Oliver, J. Kohut, J. H. Cohen, Michael S. Dinniman, John M. Klinck, C. S. Reiss, G. R. Cutter, H. Statscewich, K. S. Bernard, W. Fraser Jan 2022

Subsurface Eddy Facilitates Retention Of Simulated Diel Vertical Migrators In A Biological Hotspot, K. Hudson, M. J. Oliver, J. Kohut, J. H. Cohen, Michael S. Dinniman, John M. Klinck, C. S. Reiss, G. R. Cutter, H. Statscewich, K. S. Bernard, W. Fraser

OES Faculty Publications

Diel vertical migration (DVM) is common in zooplankton populations worldwide. Every day, zooplankton leave the productive surface ocean and migrate to deepwater to avoid visual predators and return to the surface at night to feed. This behavior may also help retain migrating zooplankton in biological hotspots. Compared to fast and variable surface currents, deep ocean currents are sluggish, and can be more consistent. The time spent in the subsurface layer is driven by day length and the depth of the surface mixed layer. A subsurface, recirculating eddy has recently been described in Palmer Deep Canyon (PDC), a submarine canyon in …


Toxic Effects Of Silver Ions On Early Developing Zebrafish Embryos Distinguished From Silver Nanoparticles, Martha S. Johnson, Preeyaporn Songkiatisak, Pavan Kumar Cherukuri, Xiao-Hong Nancy Xu Jan 2022

Toxic Effects Of Silver Ions On Early Developing Zebrafish Embryos Distinguished From Silver Nanoparticles, Martha S. Johnson, Preeyaporn Songkiatisak, Pavan Kumar Cherukuri, Xiao-Hong Nancy Xu

Chemistry & Biochemistry Faculty Publications

Currently, effects of nanomaterials and their ions, such as silver nanoparticles (Ag NPs) and silver ions (Ag+), on living organisms are not yet fully understood. One of the vital questions is whether nanomaterials have distinctive effects on living organisms from any other conventional chemicals (e.g., their ions), owing to their unique physicochemical properties. Due to various experimental protocols, studies of this crucial question have been inconclusive, which hinders rational design of effective regulatory guidelines for safely handling NPs. In this study, we chronically exposed early developing zebrafish embryos (cleavage-stage, 2 hours post-fertilization, hpf) to a dilution series of …