Life Sciences Commons^™

Movement Behavior And Habitat Selection Of Juvenile Mountain Lions (Puma Concolor) During Three Behavioral States Of Dispersal, John F. Randolph

All Graduate Theses and Dissertations, Fall 2023 to Present

Juvenile dispersal, the act of moving from their natal range to the place where they eventually reproduce and establish an adult home range is hazardous. Juveniles must travel and find food across unfamiliar landscapes, where they must also cross roads, avoid harvest, and navigate developed landscapes. Despite the inherent dangers of dispersal, this demographic process is important for finding suitable mates and reducing inbreeding depression. Wildlife conservation concerns arise when individuals are unable to disperse due to a loss of connectivity, as this can negatively impact population demographics and genetic diversity. We explored the effects of hunting and human-developed landscapes …

Spatiotemporal Dynamics Of Disease: Social And Environmental Drivers Of Movement, Connectivity, And Disease Transmission In Bighorn Sheep, Lauren E. Ricci

All Graduate Theses and Dissertations, Fall 2023 to Present

Movement is a fundamental component of animal ecology. Animals move in order to access resources and avoid risk. Movement decisions aggregated across time determine how individuals use space, contact dynamics between individuals within a population, and connectivity across a species range. These patterns that emerge from movement decisions have downstream implications for many ecological processes and a mechanistic understanding of movement can help answer broader questions about ecology.

Disease dynamics are intrinsically tied to movement. Understanding the mechanisms that drive movement can elucidate how disease will spread and impact host populations. In this vein, I employed a suite of movement …

Functional Network Reconfiguration Supporting Memory-Guided Attention, Kylie Isenburg, Thomas M. Morin, Maya L. Rosen, David C. Somers, Chantal E. Stern

Neuroscience: Faculty Publications

Studies have identified several brain regions whose activations facilitate attentional deployment via long-term memories. We analyzed task-based functional connectivity at the network and node-specific level to characterize large-scale communication between brain regions underlying long-term memory guided attention. We predicted default mode, cognitive control, and dorsal attention subnetworks would contribute differentially to long-term memory guided attention, such that network-level connectivity would shift based on attentional demands, requiring contribution of memory-specific nodes within default mode and cognitive control subnetworks. We expected that these nodes would increase connectivity with one another and with dorsal attention subnetworks during long-term memory guided attention. Additionally, we …

Effects Of Landscape Structure On Plants Species Richness In Small Grassland Remnants In Two Different Landscapes, S. A. O. Cousins, O. Eriksson

IGC Proceedings (1997-2023)

There is an increasing interest in using the landscape as the operational scale in many ecological studies. Current species richness in the landscape may be explained by past land use, and habitats may harbour species favoured by an environment that no longer exists. In this study we have included both a landscape scale and a temporal scale. The objective was to explain species pattern and the effect of isolation, habitat size and surrounding land use, and past land use change, on small grassland remnants in rural landscapes.

Increased Floodplain Inundation In The Amazon Since 1980, Ayan Fleischmann, Fabrice Papa, Stephen K. Hamilton, Alice Fassoni-Andrade, Sly Wongchuig, Jhan Carlo Espinoza, Rodrigo Paiva, John Melack, Etienne Fluet-Chouinard, Rafael M. Almeida

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Extensive floodplains throughout the Amazon basin support important ecosystem services and influence global water and carbon cycles. A recent change in the hydroclimatic regime of the region, with increased rainfall in the northern portions of the basin, has produced record-breaking high water levels on the Amazon River mainstem. Yet, the implications for the magnitude and duration of floodplain inundation across the basin remain unknown. Here we leverage state-of-the-art hydrological models, supported by in situ and remote sensing observations, to show that the maximum annual inundation extent along the central Amazon increased by 26% since 1980. We further reveal increased flood …

Larval Dispersal Patterns And Connectivity Of Acropora On Florida’S Coral Reef And Its Implications For Restoration, Samantha King, Antoine Saint-Amand, Brian K. Walker, Emmanuel Hanert, Joana Figueiredo

Marine & Environmental Sciences Faculty Articles

Since the 1980s, populations of Acropora cervicornis and A. palmata have experienced severe declines due to disease and anthropogenic stressors; resulting in their listing as threatened, and their need for restoration. In this study, larval survival and competency data were collected and used to calibrate a very high-resolution hydrodynamic model (up to 100m) to determine the dispersal patterns of Acropora species along the Florida’s Coral Reef. The resulting connectivity matrices was incorporated into a metapopulation model to compare strategies for restoring Acropora populations. This study found that Florida’s Coral Reef was historically a well-connected system, and that spatially selective restoration …

Quantifying Antarctic Krill Connectivity Across The West Antarctic Peninsula And Its Role In Large-Scale Pygoscelis Penguin Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of krill may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis spp. penguins that breed along the WAP during the austral summer. Antarctic krill are also heavily fished commercially; therefore, understanding population connectivity of krill is critical to effective management. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across …

Green On The Map - The Influence Of Conservation Easements On The Naturalness Of Landscapes In The United States, Nakisha Fouch

All Dissertations

Large protected areas have long been the cornerstone of conservation biology, however, in an era branded by the human dominance of ecosystems, regional landscape structure and function are often a consequence of accumulated land-use decisions that may or may not include a nod to conservation planning. With underrepresentation of habitats in publicly protected areas, attention has focused on the function of alternative land conservation mechanisms. Private conservation easements (CEs) have proliferated in the United States, yet assessing landscape-level function is confounded by holder and donor intent, national and regional policy, regional landscape contexts, varying extents, resolution, and temporal scale. Over …

Incorporating Human Effects In Quantifying Mechanisms Of Stream Fish Community Structure Using Metacommunity Theory, Lauren E. Stoczynski

All Dissertations

Metacommunity theory incorporates local and regional factors to understand how biotic communities are structured across the landscape. Despite established knowledge of how humans impact aquatic systems, inclusion of anthropogenic factors in metacommunity studies have been largely ignored. Additionally, alpha, beta, and gamma diversity can all be explored at the metacommunity level to investigate mechanistic drivers of community structure. Beta diversity can be further partitioned into turnover and richness difference components, each with different mechanistic drivers. Streams provide an excellent study system for metacommunity research because of the dendritic structure of watersheds and the natural delineation that watershed boundaries provide. Large-extent …

Mitigating Bighorn Sheep–Vehicle Collisions And Habitat Fragmentation With Overpasses And Adaptive Mitigation, Jeffrey W. Gagnon, Chad D. Loberger, Kari S. Ogren, Scott C. Sprague, Susan R. Boe, Raymond E. Schweinsburg

Human–Wildlife Interactions

As transportation infrastructure expands to accommodate increasing human population growth, wildlife–vehicle conflicts (WVCs) are a growing concern for motorist safety and wildlife populations. In the case of large ungulates, minimal information exists on successful mitigation of WVCs involving bighorn sheep (Ovis canadensis) and habitat fragmentation. Too address this void, we evaluated the effectiveness of 3 new wildlife overpasses, 3 culverts, 2 bridges, and ungulate exclusionary fencing as potential desert bighorn sheep (O. c. nelsoni; sheep) crossing opportunities along US Highway 93 in Arizona, USA. We evaluated sheep movements using global positioning system (GPS) radio-transmitter collars and …

Spatial And Temporal Heterogeneity Of Hyporheic Invertebrates In An Ozark Stream, David Fleshman

MSU Graduate Theses

The hyporheic zone (HZ), an ecotone between surface water and groundwater in streams, provides extensive but underappreciated habitat for invertebrates in alluvial systems like the gravel-bed streams common in the Ozark highlands. Relative to its importance as a habitat, little is known about spatial distribution and response to disturbance by invertebrates in the HZ. In riffle-pool systems, surface water typically enters the HZ at the head of riffles (downwelling) and returns to the surface at the tail of riffles (upwelling). Previous research has found differences in invertebrate communities and environmental variables between upwelling and downwelling zones, but results have been …

Connectivity Shapes Functional Diversity And Maintains Complementarity In Surf Zones On Exposed Coasts, Christopher J. Henderson, Ben L. Gilby, Andrew D. Olds, Jesse Mosman, Rod M. Connolly, Glenn Hyndes, Brendan Kelaher, Brooke Maslo, Alan Williams, Thomas A. Schlacher

Research outputs 2022 to 2026

Habitat complexity and connectivity can influence the number of species and their diversity across a landscape. For the surf zones of ocean-exposed beaches, globally one of the longest habitat interfaces, the assumed low structural complexity, and apparent homogeneity, of the sandy seafloor habitats predicts low taxonomic and functional diversity. Here, we assessed how the configuration of the seascape and the context of different beach structure functional diversity and functional niche space of fish assemblages in surf zones. We expected that beaches that were well connected with highly productive and complex estuarine and reef habitats would support a greater level of …

Investigation Of Memory Related Cortical Thalamic Circuitry In The Human Brain, Puck C. Reeders

FIU Electronic Theses and Dissertations

This dissertation examined the role of medial prefrontal cortex (mPFC) and the hippocampus (HC) in episodic memory, and provides a novel approach to identify the midline thalamus mediating mPFC-HC interactions in humans. The mPFC and HC are critical to the temporal organization of episodic memory, and these interactions are disrupted in several mental health and neurological disorders. In the first study, I provide evidence that the mPFC is involved in ordinal retrieval, and the HC is active in temporal context retrieval in remembering the order of when events happen. In the second study, I focus on the anatomical basis of …

On Spatiotemporal Connectivity Dynamics: Perspectives From A Naturally Fragmented Metapopulation, Joseph Drake

Doctoral Dissertations

Connectivity has quickly become a central tenet of ecological research, frequently evoked for conservation research and management activities. However, the concept of connectivity has proliferated into many forms for many different perspectives. Generally said, population distributions, demography, landscape, and dispersal all contribute to connectivity in a meaningful way. While great progress has been made in increasing realism in connectivity, one component seemed to stand out as being underappreciated: the role of population dynamics in the application of landscape connectivity. I began to acquire an appreciation for how common modeling approaches make assumptions about these core components of connectivity. In Chapter …

Editorial: Deep Pelagic Ecosystem Dynamics In A Highly Impacted Water Column: The Gulf Of Mexico After Deepwater Horizon, Tracey Sutton, Kevin M. Boswell, Heather Bracken-Grissom, Jose V. Lopez, Michael Vecchione, Marsh Youngbluth

Marine & Environmental Sciences Faculty Articles

The intermediate-sized midwater fauna (fishes, shrimps, and cephalopods; “micronekton” collectively) are dominant components of the pelagic ocean, which is by far the largest ecosystem type on Earth by several metrics (volume, organismal numbers, biomass, and productivity). Deep-pelagic micronekton, those animals residing in the water column below 200 m depth during the day, are the direct link between plankton and oceanic top predators, and through the linked processes of feeding and daily vertical migration facilitate one of Earth's most important ecosystem services to humans, carbon sequestration. Despite increasing recognition of this importance, a disconnect exists between stewardship and human impact; only …

Progress On Research Regarding Ecology And Biodiversity Of Coastal Fisheries And Nektonic Species And Their Habitats Within Coastal Landscapes, Mark S. Peterson, Michael J. Andres

Faculty Publications

This paper aims to highlight the new research and significant advances in our understanding of links between coastal habitat quality/quantity/diversity and the diversity of fisheries species and other mobile aquatic species (hereafter nekton) that use them within coastal landscapes. This topic is quite diverse owing to the myriad of habitat types found in coastal marine waters and the va-riety of life history strategies fisheries species and nekton use in these environments. Thus, we focus our mini-review on five selective but relevant topics, habitat templates, essential fish habitat, habitat mosaics/habitat connectivity, transitory/ephemeral habitat, and the emerging/maturing approaches to the study of …

Global Connectivity Of Southern Ocean Ecosystems, Eugene J. Murphy, Nadine M. Johnston, Eileen E. Hofmann, Richard A. Phillips, Jennifer A. Jackson, Andrew J. Constable, Sian F. Henley, Jessica Melbourne-Thomas, Rowan Trebilco, Rachel D. Cavanagh, Geraint A. Tarling, Ryan A. Saunders, David K.A. Barnes, Daniel P. Costa, Stuart P. Corney, Ceridwen I. Fraser, Juan Höfer, Kevin A. Hughes, Chester J. Sands, Sally E. Thorpe, Philip N. Trathan, José C. Xavier

CCPO Publications

Southern Ocean ecosystems are globally important. Processes in the Antarctic atmosphere, cryosphere, and the Southern Ocean directly influence global atmospheric and oceanic systems. Southern Ocean biogeochemistry has also been shown to have global importance. In contrast, ocean ecological processes are often seen as largely separate from the rest of the global system. In this paper, we consider the degree of ecological connectivity at different trophic levels, linking Southern Ocean ecosystems with the global ocean, and their importance not only for the regional ecosystem but also the wider Earth system. We also consider the human system connections, including the role of …

Insights Into Insular Isolation Of The Bull Shark, Carcharhinus Leucas (Müller And Henle, 1839), In Fijian Waters, Kerstin B J Glaus, Sharon A. Appleyard, Brian Stockwell, Juerg M. Brunnschweiler, Mahmood S. Shivji, Eric Clua, Amandine D. Marie, Ciro Rico

Biology Faculty Articles

The bull shark (Carcharhinus leucas) is a large, mobile, circumglobally distributed high trophic level predator that inhabits a variety of remote islands and continental coastal habitats, including freshwater environments. Here, we hypothesize that the barriers to dispersal created by large oceanic expanses and deep-water trenches result in a heterogeneous distribution of the neutral genetic diversity between island bull shark populations compared to populations sampled in continental locations connected through continuous coastlines of continental shelves. We analyzed 1,494 high-quality neutral single nucleotide polymorphism (SNP) markers in 215 individual bull sharks from widespread locations across the Indian and Pacific Oceans …

Network-Level Mechanisms Underlying Effects Of Transcranial Direct Current Stimulation (Tdcs) On Visuomotor Learning, Pejman Sehatpour, Clément Dondé, Matthew J. Hoptman, Johanna Kreither, Devin Adair, Elisa Dias, Blair Vail, Stephanie Rohrig, Gail Silipo, Javier Lopez-Calderon, Antigona Martinez, Daniel C. Javitt

Publications and Research

Transcranial direct current stimulation (tDCS) is a non-invasive brain stimulation approach in which low level currents are administered over the scalp to influence underlying brain function. Prevailing theories of tDCS focus on modulation of excitation-inhibition balance at the local stimulation location. However, network level effects are reported as well, and appear to depend upon differential underlying mechanisms. Here, we evaluated potential network-level effects of tDCS during the Serial Reaction Time Task (SRTT) using convergent EEG- and fMRI-based connectivity approaches. Motor learning manifested as a significant (p <.0001) shift from slow to fast responses and corresponded to a significant increase in beta-coherence (p <.0001) and fMRI connectivity (p <.01) particularly within the visual-motor pathway. Differential patterns of tDCS effect were observed within different parametric task versions, consistent with network models. Overall, these findings demonstrate objective physiological effects of tDCS at the network level that result in effective behavioral modulation when tDCS parameters are matched to network-level requirements of the underlying task.

Multimodal Computational Modeling Of Visual Object Recognition Deficits But Intact Repetition Priming In Schizophrenia, Pejman Sehatpour, Anahita Bassir Nia, Devin Adair, Zhishun Wang, Heloise M. Debaun, Gail Silipo, Antigona Martinez, Daniel C. Javitt

Publications and Research

The term perceptual closure refers to the neural processes responsible for “filling-in” missing information in the visual image under highly adverse viewing conditions such as fog or camouflage. Here we used a closure task that required the participants to identify barely recognizable fragmented line-drawings of common objects. Patients with schizophrenia have been shown to perform poorly on this task. Following priming, controls and importantly patients can complete the line-drawings at greater levels of fragmentation behaviorally, suggesting an improvement in their ability to performthe task. Closure phenomena have been shown to involve a distributed network of cortical regions, notably the lateral …

Modeling Early Life: Ontogenetic Growth And Behavior Affect Population Connectivity In Gulf Of Mexico Marine Fish, Kelly Vasbinder

USF Tampa Graduate Theses and Dissertations

This dissertation is an examination of growth, behavior, and dispersal during the early life stages of marine fishes in the Gulf of Mexico. Understanding movements of early life stages is a key part of managing exploited fish populations. Position in the water column can impact larval dispersal, since it determines those currents to which larvae are exposed. First, I investigated the relationship between length and age in early life stages of marine fishes. I found that demersal fish taxa tend to be represented by exponential models, while pelagic fish tend to be represented by linear models. I suggest this may …

Long-Term Effectiveness Of Tree Removal To Re-Establish Sagebrush Steppe Vegetation And Associated Spatial Patterns In Surface Conditions And Soil Hydrologic Properties, C. Jason Williams, Justin C. Johnson, Frederick B. Pierson, Cameron S. Burleson, Viktor O. Polyakov, Patrick R. Kormos, S. Kossi Nouwakpo

Articles

Pinyon (Pinus spp.) and juniper (Juniperus spp.) woodland encroachment into sagebrush (Artemisia spp.) steppe communities throughout western North America has substantially altered the vegetation structure and hydrologic function of one of the most ecologically important rangeland ecosystems in the world. Various pinyon and juniper tree removal practices are employed to re-establish sagebrush steppe vegetation and an associated resource-conserving ecohydrologic function. The effectiveness of these practices is highly variable owing to the vast domain in which woodland encroachment occurs, climate fluctuations, differences in treatment applications, and myriads of pre-treatment conditions and post-treatment land uses. This study evaluated the …

Improving Aquatic Habitat Representation In Utah Using Large Spatial Scale Environmental Datasets, Gregory C. Goodrum

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Rivers provide habitat for aquatic species, but widespread human water development degrades aquatic habitat, fragments stream networks, and threatens native fish populations. Habitat suitability models are commonly used to identify current instream habitat conditions, but are often species-specific, data-intensive, and rarely suitable to the large spatial scales required in conservation and water resources management. Thus, there is need to develop and validate habitat suitability models that provide ecologically-meaningful estimations of aquatic habitat, but are simple enough to apply at large geographic areas and flexible to incorporate different species. I tested the accuracy of 15 habitat suitability models estimating Bonneville Cutthroat …

Comparative Population Genomics And Biophysical Modeling Of Shrimp Migration In The Gulf Of Mexico Reveals Current-Mediated Connectivity, Laura Timm, Lys M. Isma, Matthew Johnston, Heather D. Bracken-Grissom

Biology Faculty Articles

The Gulf of Mexico experiences frequent perturbations, both natural and anthropogenic. To better understand the impacts of these events, we must inventory natural variability within the ecosystem, communities, species, and populations, and contextualize these findings in relation to physical features. Here, we present an integrated study of comparative population genomics and biophysical oceanography. Targeting three species of mesopelagic shrimp common to the Gulf of Mexico midwater (Acanthephyra purpurea, Systellaspis debilis, and Robustosergia robusta), we analyzed genetic diversity and population connectivity as proxies for species health and resilience, respectively. We also simulated a range of vertical migratory behaviors …

Comparative Population Genomics And Biophysical Modeling Of Shrimp Migration In The Gulf Of Mexico Reveals Current-Mediated Connectivity, Laura Timm, Lys M. Isma, Matthew Johnston, Heather D. Bracken-Grissom

Biology Faculty Articles

The Gulf of Mexico experiences frequent perturbations, both natural and anthropogenic. To better understand the impacts of these events, we must inventory natural variability within the ecosystem, communities, species, and populations, and contextualize these findings in relation to physical features. Here, we present an integrated study of comparative population genomics and biophysical oceanography. Targeting three species of mesopelagic shrimp common to the Gulf of Mexico midwater (Acanthephyra purpurea, Systellaspis debilis, and Robustosergia robusta), we analyzed genetic diversity and population connectivity as proxies for species health and resilience, respectively. We also simulated a range of vertical migratory behaviors …

Optimal Spatial Prioritization Of Control Resources For Elimination Of Invasive Species Under Demographic Uncertainty, Kim M. Pepin, Timothy J. Smyser, Amy J. Davis, Ryan S. Miller, Sophie Mckee, Kurt C. Vercauteren, William Kendall, Chris Slootmaker

USDA Wildlife Services: Staff Publications

Populations of invasive species often spread heterogeneously across a landscape, consisting of local populations that cluster in space but are connected by dispersal. A fundamental dilemma for invasive species control is how to optimally allocate limited fiscal resources across local populations. Theoretical work based on perfect knowledge of demographic connectivity suggests that targeting local populations from which migrants originate (sources) can be optimal. However, demographic processes such as abundance and dispersal can be highly uncertain, and the relationship between local population density and damage costs (damage function) is rarely known. We used a metapopulation model to understand how budget and …

Toadal Isolation: Genetic Connectivity Of The Western Toad (Anaxyrus Boreas) Along I-90 In The Snoqualmie Pass Area Of Washington State, Anneliese Myers

All Master's Theses

Single-nucleotide polymorphisms (SNPs) were used to assess the genetic connectivity of western toad (Anaxyrus boreas) breeding populations along Interstate-90 near Snoqualmie Pass, WA. Sites north and south of the freeway were sampled during the breeding season of 2019. SNP loci were subsequently generated using the proprietary DArTseq^TM (Canberra, ACT, Australia) method. A total of 15,468 SNPs were used to calculate pairwise F_ST values and three distinct breeding populations were identified, two north and one south of I-90. All pairwise F_ST values between these sites were low (0.02) but significantly different from 0. The lowest pairwise …

Comparing Fence Modeling And Mapping Approaches To Support Wildlife Management And Research In Southwest Montana, Simon Albert Buzzard

Graduate Student Theses, Dissertations, & Professional Papers

Fences pose significant challenges to wildlife movement, but their effects are difficult to quantify because fence location and fence type data are lacking on a global scale. We developed a fence location and density model in southwest Montana, USA to provide data to researchers and managers, and test whether previous models could be applied to a new region and retain suitable levels of statistical accuracy. Our model used local expert opinion to inform how road, land cover, and ownership spatial layers interacted to predict fence locations. We validated the model against fence data collected on random 3.2 km road transects …

Integrating Social Dimensions Into Spatial Connectivity Planning For Grizzly Bears, Abigail Sage

Boise State University Theses and Dissertations

In anthropogenic landscapes, which prevail globally, preserving key habitat corridors or routes between wildlife populations is vital for long-term species persistence. Animals moving through these corridors can encounter a number of barriers, including roads, fences, or other human land-uses. Additionally, people unwilling to cohabitate with wildlife can also kill animals considered nuisances or disturb animals in ways that reduce their fitness. The spatial patterns of human tolerance therefore play an important role in the efficacy of habitat corridors. Although there are large bodies of research on habitat corridors and human attitudes toward wildlife, studies that examine the spatial interaction of …

Connectivity And Nitrate Uptake Potential Of Intermittent Streams In The Northeast Usa, Kelly Addy, Arthur J. Gold, Molly K. Welsh, Peter V. August, Mark H. Stolt, Clay P. Arango, Peter M. Groffman

All Faculty Scholarship for the College of the Sciences

Non-perennial streams dominate the extent of stream networks worldwide. Intermittent streams can provide ecosystem services to the entire network—including nitrate uptake to alleviate eutrophication of coastal waters—and are threatened by lack of legal protection. We examined 12 intermittent streams in the temperate, humid climate of the Northeast USA. Over 3 years of monitoring, continuous flow was observed a median of 277 d yr−1, with no-flow conditions from early summer into fall. Estimated median discharge was 2.9 L s−1 or 0.36mm d−1. All intermittent streams originated from source wetlands (median area: 0.27 ha) and the median length of the intermittent stream …