Life Sciences Commons^™

La Diversidad De Los Análisis De Diversidad La Diversidad De Los Analisis De Diversidad [The Diversity Of Diversity Analyses], Victor D. Carmona-Galindo, Tizziana V. Carmona

Biology Faculty Works

There is a lack of consistency with respect to the use of the terms like species richness, diversity and biodiversity, which extends to the analysis of diversity indices and the merit of using diversity indices in the evaluation (comparison and contrast) of biological communities. The purpose of this article is to provide working definitions for these terms and cite examples from the primary literature that demonstrate the utility of estimating richness, evaluating proportional abundance patterns, as well as comparing indices of diversity and similarity to study patterns of biological organization at different ecological scales. Additionally, we provide a manual in …

La Diversidad De Los Analisis De Diversidad [The Diversity Of Diversity Analyses], Victor D. Carmona

Victor D. Carmona-Galindo

There is a lack of consistency with respect to the use of the terms like species richness, diversity and biodiversity, which extends to the analysis of diversity indices and the merit of using diversity indices in the evaluation (comparison and contrast) of biological communities. The purpose of this article is to provide working definitions for these terms and cite examples from the primary literature that demonstrate the utility of estimating richness, evaluating proportional abundance patterns, as well as comparing indices of diversity and similarity to study patterns of biological organization at different ecological scales. Additionally, we provide a manual in …

A Multi-Scale Analysis Of The Effects Of Local- And Landscape-Level Variables On Nuthatch Occupancy And Distribution, Jesse Wood

Earth and Environmental Sciences Presentations

The objectives of this study are to conduct a multi-scale analysis of the effects of habitat variables on Brownheaded Nuthatch (S. pusilla) occupancy and spatial distribution in the greater Greenville area of South Carolina. By understanding the local- and landscape-drivers of an ecologically sensitive species, we can build a predictive model of species occurrence and contribute to regional conservation efforts of both habitat and biodiversity.

The Effects Of Invasive Plants On Biodiversity Across Spatial Scales, Kristin Irene Powell

All Theses and Dissertations (ETDs)

Although introduced plant species are often considered to be one of the most notable anthropogenic threats to biodiversity, their influence on biodiversity remains controversial. Some studies have shown large declines in biodiversity in plant-invaded areas, whereas others have noted that plant invasions are rarely implicated as the cause of species extinctions. This dissertation aims to synthesize this seemingly conflicting literature on the effects of invasive plants on biodiversity. The overarching hypothesis in this research is that the effect of invasive plant species on biodiversity is scale-dependent, and the discrepancy among studies can be explained by a difference in the scales …

Four Decades Of Andean Timberline Migration And Implications For Biodiversity Loss With Climate Change, David A. Lutz, Rebecca L. Powell, Miles R. Silman

Dartmouth Scholarship

Rapid 21st-century climate change may lead to large population decreases and extinction in tropical montane cloud forest species in the Andes. While prior research has focused on species migrations per se, ecotones may respond to different environmental factors than species. Even if species can migrate in response to climate change, if ecotones do not they can function as hard barriers to species migrations, making ecotone migrations central to understanding species persistence under scenarios of climate change. We examined a 42-year span of aerial photographs and high resolution satellite imagery to calculate migration rates of timberline–the grassland-forest ecotone–inside and outside of …

Molecular Systematics Of The Subfamily Phasiinae (Diptera: Tachinidae), Jeremy Daniel Blaschke

Masters Theses

The subfamily Phasiinae (Diptera: Tachinidae) is composed of obligate endoparasitoid flies that attack heteropteran insects, many of which are important agricultural pests. To lay a foundation for future studies in phasiine life history and their potential for use as biological control agents, the phylogenetic relationships within Phasiinae were explored using nucleotide sequences of two genes, CAD and LGL. A total of 63 taxa for CAD and 73 taxa for LGL were included in the analyses, representing 58 genera. Maximum likelihood inference methods were employed to reconstruct phylogenetic relationships in separate analyses of each gene and in a combined dataset. Phylogenetic …

Global Cities Are Coastal Cities Too: Paradox In Sustainability?, Herman L. Boschken

Herman L. Boschken

Worldwide, most global cities are located in coastal zones, but a paradox of sustainability is especially striking for American global cities. This article examines such paradox drawn between globalization-induced development and coastal ecosystems. It focuses on two developmental components found principally in global cities: (1) the agglomeration of foreign waterborne commerce and global business services and (2) the accelerated activity and mobility habits of a global professional class. Despite formidable gaps in research, some anecdotal evidence suggests unique hazards exist for the coastal ecology as globalization pressures expand a global city’s urban footprint.

Redbuds Similar Around The World, W. John Hayden

Biology Faculty Publications

Like music, one of the hallmarks of biodiversity is theme and variation. Redbuds—species of the genus Cercis— from around the world illustrate this analogy well. Because all redbud species conform to a certain morphological theme, anyone familiar with one particular species of redbud should be able to recognize without hesitation any other redbud species as a member of the genus Cercis. In brief, the redbud theme consists of broad, basally-lobed, leaves with pulvinar petiole thickenings, and pea-like red-purple (rarely white) flowers that may arise on small twigs or main trunks. In fact, these plants are so distinctive, it would …

A Comprehensive And Integrative Reconstruction Of Evolutionary History For Anomura (Crustacea: Decapoda)., Heather D Bracken-Grissom, Maren E Cannon, Patricia Cabezas, Rodney M Feldmann, Carrie E Schweitzer, Shane T Ahyong, Darryl L Felder, Rafael Lemaitre, Keith A Crandall

Computational Biology Institute

BACKGROUND: The infraorder Anomura has long captivated the attention of evolutionary biologists due to its impressive morphological diversity and ecological adaptations. To date, 2500 extant species have been described but phylogenetic relationships at high taxonomic levels remain unresolved. Here, we reconstruct the evolutionary history-phylogeny, divergence times, character evolution and diversification-of this speciose clade. For this purpose, we sequenced two mitochondrial (16S and 12S) and three nuclear (H3, 18S and 28S) markers for 19 of the 20 extant families, using traditional Sanger and next-generation 454 sequencing methods. Molecular data were combined with 156 morphological characters in order to estimate the largest …

Does Presence Of A Mid-Ocean Ridge Enhance Biomass And Biodiversity?, Imants G. Priede, Odd Aksel Bergstad, Peter I. Miller, M. Vecchione, Andrey Gebruk, Tone Falkenhaug, David S. M. Billett, Jessica Craig, Andrew C. Dale, Mark A. Shields, Gavin H. Tilstone, Tracey Sutton, Andrew J. Gooday, Mark E. Inall, Daniel O. B. Jones, Victor Martinez-Vicente, Gui Menezes, Tomasz Niedzielski, Thorsteinn Sigurdsson, Nina Rothe, Antonina Rogacheva, Claudia H. S. Alt, Timothy Brand, Richard Abell, Andrew S. Brierley, Nicola J. Cousins, Deborah Crockard, A. Rus Hoelzel, Age Hoines, Tom B. Letessier, Jane F. Read, Tracy Shimmield, Martin J. Cox, John K. Galbraith, John D. M. Gordon, Tammy Horton, Francis Neat, Pascal Lorance

Marine & Environmental Sciences Faculty Articles

In contrast to generally sparse biological communities in open-ocean settings, seamounts and ridges are perceived as areas of elevated productivity and biodiversity capable of supporting commercial fisheries. We investigated the origin of this apparent biological enhancement over a segment of the North Mid-Atlantic Ridge (MAR) using sonar, corers, trawls, traps, and a remotely operated vehicle to survey habitat, biomass, and biodiversity. Satellite remote sensing provided information on flow patterns, thermal fronts, and primary production, while sediment traps measured export flux during 2007–2010. The MAR, 3,704,404 km² in area, accounts for 44.7% lower bathyal habitat (800–3500 m depth) in the …

Selected Costs And Benefits Of Protecting Vital Wildlife Habitats While Producing Biofuel, Benjamin Lewis Totty

Masters Theses

The objective of this study is to estimate selected costs and benefits of meeting the 2022 biofuel production mandates using switchgrass as the feedstock. This study involves the simulation of three scenarios to evaluate the cost of protecting and promoting biodiversity while producing switchgrass for biofuel. Two models are used in this study. The first, the Biofuels Facility Location Analysis Modeling Endeavor (BioFLAME), was developed at the University of Tennessee to study biorefinery location, feed stock source areas and costs associated with biofuel production. The second model was developed by the Nature Conservancy as part of Tennessee’s State Wildlife Action …

Integrating, Developing, And Testing Methods To Generate More Cohesive Approaches To Biogeographic Inference, Mallory Elizabeth Eckstut

UNLV Theses, Dissertations, Professional Papers, and Capstones

As a fundamental component of the developing discipline of conservation biogeography, broadscale analyses of biotic assembly and disassembly across multiple temporal and spatial scales provide an enhanced understanding of how geologic transformations and climate oscillations have shaped extant patterns of biodiversity. As with any scientific field, there are limitations in the case of biogeographic historical reconstructions. Historical reconstructions are only as robust as the theoretical underpinnings of the methods of reconstruction (including data collection, quality, analysis, and interpretation). Nevertheless, historical reconstructions of species distributions can help inform our understanding of how species respond to environmental change.

My dissertation takes a …

Opposing Mechanisms Drive Richness Patterns Of Core And Transient Bird Species, Jessica R. Coyle, Allen H. Hurlbert, Ethan P. White

Biology Faculty Publications

Studies of biodiversity typically assume that all species are equivalent. However, some species in a community maintain viable populations in the study area, while others occur only occasionally as transient individuals. Here we show that North American bird communities can reliably be divided into core and transient species groups and that the richness of each group is driven by different processes. The richness of core species is influenced primarily by local environmental conditions, while the richness of transient species is influenced primarily by the heterogeneity of the surrounding landscape. This demonstrates that the well-known effects of the local environment and …

Investigations Of Phytoplankton Diversity In Chesapeake Bay, Todd Arthur Egerton

Biological Sciences Theses & Dissertations

Characterizing the diversity of a community in relation to environmental conditions and ecosystem functions are core concepts in ecology. While decades of research have led to a growing comprehension of diversity in many ecosystems, our understanding in aquatic habitats and microbial organisms remains relatively limited. Phytoplankton represent a diverse and important group that contribute approximately half of global primary productivity and are intrinsically connected to changing environmental conditions, especially in systems as dynamic as estuaries. To better understand the ecological processes governing phytoplankton composition and diversity, spatial and temporal patterns of environmental parameters and their relation to the algal community …

Estimated Losses Of Plant Biodiversity Across The U.S. From Historical N Deposition From 1985—2010., Christopher M. Clark, Philip E. Morefield, Frank S. Gilliam, Linda H. Pardo

Biological Sciences Faculty Research

Although nitrogen (N) deposition is a significant threat to herbaceous plant biodiversity worldwide, it is not a new stressor for many developed regions. Only recently has it become possible to estimate historical impacts nationally for the United States. We used 26 years (1985–2010) of deposition data, with ecosystem-specific functional responses from local field experiments and a national critical loads (CL) database, to generate scenario-based estimates of herbaceous species loss. Here we show that, in scenarios using the low end of the CL range, N deposition exceeded critical loads over 0.38, 6.5, 13.1, 88.6, and 222.1 million ha for the Mediterranean …

Biogeography Of The Ecosystems Of The Healthy Human Body, Yanjiao Zhou, Hongyu Gao, Kathie A. Mihindukulasuriya, Patricio S. La Rosa, Kristine M. Wylie, Tatiana Vishnivetskaya, Mircea Podar, Barb Warner, Phillip I. Tarr, David E. Nelson, J. D. Fortenberry, Martin Holland, Sarah E. Burr, William D. Shannon, Erica Sodergren, George M. Weinstock

Faculty Publications and Other Works -- Ecology and Evolutionary Biology

Background

Characterizing the biogeography of the microbiome of healthy humans is essential for understanding microbial associated diseases. Previous studies mainly focused on a single body habitat from a limited set of subjects. Here, we analyzed one of the largest microbiome datasets to date and generated a biogeographical map that annotates the biodiversity, spatial relationships, and temporal stability of 22 habitats from 279 healthy humans.

Results

We identified 929 genera from more than 24 million 16S rRNA gene sequences of 22 habitats, and we provide a baseline of inter-subject variation for healthy adults. The oral habitat has the most stable microbiota …

Habitat Availability And Heterogeneity And The Indo-Pacific Warm Pool As Predictors Of Marine Species Richness In The Tropical Indo-Pacific, Jonnell C. Sanciangco, Kent E. Carpenter, Peter J. Etnoyer, Fabio Moretzsohn

Biological Sciences Faculty Publications

Range overlap patterns were observed in a dataset of 10,446 expert-derived marine species distribution maps, including 8,295 coastal fishes, 1,212 invertebrates (crustaceans and molluscs), 820 reef-building corals, 50 seagrasses, and 69 mangroves. Distributions of tropical Indo-Pacific shore fishes revealed a concentration of species richness in the northern apex and central region of the Coral Triangle epicenter of marine biodiversity. This pattern was supported by distributions of invertebrates and habitat-forming primary producers. Habitat availability, heterogeneity, and sea surface temperatures were highly correlated with species richness across spatial grains ranging from 23,000 to 5,100,000 km(2) with and without correction for autocorrelation. The …

The Influence Of Vertical And Horizontal Habitat Structure On Nationwide Patterns Of Avian Biodiversity, Patrick D. Culbert, Volker C. Radeloff, Curtis H. Flather, Josef M. Kellndorfer, Chadwick D. Rittenhouse, Anna M. Pidgeon

USDA Forest Service / UNL Faculty Publications

With limited resources for habitat conservation, the accurate identification of high-value avian habitat is crucial. Habitat structure affects avian biodiversity but is difficult to quantify over broad extents. Our goal was to identify which measures of vertical and horizontal habitat structure are most strongly related to patterns of avian biodiversity across the conterminous United States and to determine whether new measures of vertical structure are complementary to existing, primarily horizontal, measures. For 2,546 North American Breeding Bird Survey routes across the conterminous United States, we calculated canopy height and biomass from the National Biomass and Carbon Dataset (NBCD) as measures …

Arthropod Abundance And Diversity In Street Trees Of South Texas, Usa, Alexis Racelis, Ann T. Vacek, Carol Goolsby, John Brush, John A. Goolsby

Biology Faculty Publications and Presentations

In urban areas, street trees provide a variety of ecological services, including biodiversity conservation. In this study we examined arthropod diversity on native and non-native street trees sampled during the fall of 2010 and spring of 2011 in McAllen, Texas, one of the most rapidly growing urban areas in the country. Eighty-eight street trees were sampled by removing arthropods from the lower canopy foliage using a hand held vacuum. Arthropods were collected into nylon bags, identified to order, and counted by morphospecies. Overall, street trees supported a significant and diverse population of arthropods: a total of 1,971 arthropods were collected, …

Conus: First Comprehensive Conservation Red List Assessment Of A Marine Gastropod Mollusc Genus, Howard Peters, Bethan C. O'Leary, Julie P. Hawkins, Kent E. Carpenter, Callum M. Roberts

Biological Sciences Faculty Publications

Marine molluscs represent an estimated 23% of all extant marine taxa, but research into their conservation status has so far failed to reflect this importance, with minimal inclusion on the authoritative Red List of the International Union for the Conservation of Nature (IUCN). We assessed the status of all 632 valid species of the tropical marine gastropod mollusc, Conus (cone snails), using Red List standards and procedures to lay the groundwork for future decadal monitoring, one of the first fully comprehensive global assessments of a marine taxon. Three-quarters (75.6%) of species were not currently considered at risk of extinction owing …

Evaluating The Effects Of Common-Pool Resource Institutions And Market Forces On Species Richness And Forest Cover In Ecuadorian Indigenous Kichwa Communities, Johan A. Oldekop, Anthony J. Bebbington, Karl Hennermann, Julia Mcmorrow, David A. Springate, Bolier Torres, Nathan K. Truelove, Niklas Tysklind, Santiago Villamarín, Richard F. Preziosi

Geography

We compare conservation outcomes between a protected area (PA) and four indigenous common-property regimes (CPRs) under differing degrees of market integration in the Ecuadorian Amazon. We first assess how market forces and common-pool resource institutions governing processes of forest conversion affect biodiversity and forest cover, and whether institutions mitigate the effect of market forces. We then analyze how biodiversity and forest cover differ between a PA, and communities with different market access. Finally, we link biodiversity and forest cover changes within communities to differences in land-use practices. While we show similar levels of forest cover and biodiversity between the PA …

The Nagoya Protocol And Synthetic Biology Research: A Look At The Potential Impacts, Margo A. Bagley, Arti K. Rai

Faculty Scholarship

This report, prepared for the Synthetic Biology Project at the Woodrow Wilson International Center for Scholars, analyzes the 2010 Nagoya Protocol to the Convention on Biological Diversity and how it may affect U.S. researchers working in the field of synthetic biology. The objective of the Protocol is to provide a transparent framework for the acquisition and sharing of genetic resources on fair and equitable terms that facilitate the conservation of biological diversity and associated traditional knowledge. The report finds significant uncertainty surrounding the temporal scope of the Agreement as well as the types of genetic material that will be covered …

Soil-Plant Relations In The Annual Gypsophila (Caryopyhllaceae) Taxa Of Turkey, Mustafa Korkmaz, Hasan Özçeli̇k

Turkish Journal of Botany

The soil properties of the annual Gypsophila L. taxa of Turkey and their effects on plant morphology were investigated. The taxa studied were Gypsophila heteropoda Freyn & Sint., G. parva Barkoudah, G. elegans M.Bieb., G. bitlisensis Barkoudah, G. viscosa Murray, G. antari Post & Beauverd, G. muralis L., G. tubulosa (Jaub. & Spach) Boiss., G. confertifolia Hub.-Mor., and G. pilosa Hudson. The soils of the plant taxa were medium textured, sand or sandy-loam, saltless or a little salty, neutral, limy, rich in potassium and with very little phosphorous, and with medium levels of nitrogen and organic matter. G. antari, which …

The Lichen Flora Of Gunib Plateau, Inner-Mountain Dagestan (North-East Caucasus, Russia), Gennadii Urbanavichus, Aziz Ismailov

Turkish Journal of Botany

As a result of lichenological exploration of the Gunib plateau in the Republic of Dagestan (North-East Caucasus, Russia), we report 402 species of lichenised, 37 lichenicolous, and 7 nonlichenised fungi representing 151 genera. Nineteen species are recorded for the first time for Russia: Abrothallus chrysanthus J.Steiner, Abrothallus microspermus Tul., Caloplaca albopruinosa (Arnold) H.Olivier, Candelariella plumbea Poelt & Vezda, Candelariella rhodax Poelt & Vezda, Cladonia firma (Nyl.) Nyl., Halospora deminuta (Arnold) Tomas. & Cif., Halospora discrepans (J.Lahm ex Arnold) Hafellner, Lichenostigma epipolina Nav.-Ros., Calat. & Hafellner, Milospium graphideorum (Nyl.) D.Hawksw., Mycomicrothelia atlantica D.Hawksw. & Coppins, Parabagliettoa cyanea (A.Massal.) Gueidan & Cl.Roux, …

Contributions To Lichen Diversity Of Turkey From The Sarısu Area (Kocaeli), Gülşah Çobanoğlu, Bi̇rkan Açikgöz, Laurentiu Baloniu

Turkish Journal of Botany

A total of 85 lichen taxa from the Sarısu area of the district of Kandıra in Kocaeli Province were listed. Three new records for the biota of Turkey, Coenogonium pineti (Ach.) Lücking & Lumbsch, Lecania cuprea (A.Massal.) Van den Boom & Coppins, and Opegrapha calcarea Turner ex Sm., have been identified within the context of this study along with 81 new taxa for the province of Kocaeli.

Three Pyronemataceous Macrofungi Genera New To Turkish Mycota, Ilgaz Akata, Abdullah Kaya

Turkish Journal of Botany

Three pyronemataceous macrofungi genera, Acervus Kanouse, Neottiella (Cooke) Sacc., and Rhodoscypha Dissing & Sivertsen, are recorded for the first time from Turkey, based on the collection of Acervus epispartius (Berk. & Broome) Pfister, Neottiella rutilans (Fr.) Dennis, and Rhodoscypha ovilla (Peck) Dissing & Sivertsen. Short descriptions of the taxa are provided together with photographs related to macro- and micromorphologies.

Applying The Principles Of Spatial Modelling To The Management Of Biodiversity In The Fragmented Landscapes Of South-Western Australia, Shaun Molloy

Theses: Doctorates and Masters

Biodiversity conservation throughout the world is challenged by the impacts of a changing climate on fragmented landscapes. To mitigate these threats, conservation managers require models which can demonstrate the consequences of both negative impacts and management actions. This need can be addressed through spatial modelling applications. Unfortunately, throughout much of the world, spatial modelling is forgone, being seen as requiring skills and resources beyond the means of many conservation planners and managers. This thesis seeks to address this dilemma by delivering criteria for a successful modelling application and by providing case studies which demonstrate how appropriate modelling can be undertaken …