Life Sciences Commons^™

Expanding Virginia"S Oyster Industry While Minimizing User Conflict - Interim Report (Year 2 Of 3), Roger L. Mann, Marcia Berman, James Wesson, Melissa Southworth, Tamia Rudnicky

Reports

This study seeks to assess the sustainability of the public oyster fishery and the expansion of hatchery dependent oyster aquaculture in the Virginia portion of the Chesapeake Bay. Previous analyses have suggested that limitations in available shell resources will ultimately drive the future of the public fishery. The expansion of intensive aquaculture, already apparent in the Bay, suggests sustainability will be contingent upon the availability of bottom space and/or a shift in practices that minimize user conflict in leased areas.

Assessment Of Benthic Macrofauna Community Within Intertidal Mudflats - Hurds Cove, Lynnhaven River, Virginia, M. Lisa Kellogg, Jennifer C. Dreyer

Reports

A total of 30 samples were collected from eight locations in Hurds Cove, Lynnhaven River, VA. All samples were rinsed over a 500-μm mesh sieve and all material retained on the sieve was analyzed to determine benthic macrofaunal community identity, abundance and biomass. With the exception of one sample with relatively high biomass (50.68 g AFDW m-2) attributable to a single (Rangia cuneata), biomass across all locations was low, ranging from 0.16-0.67 g AFDW m-2. At five of the eight locations, all measurable biomass was contributed by polychaete worms. At the other three locations, polychaetes accounted for 45-57% of total …

Multidisciplinary Observing In The World Ocean's Oxygen Minimum Zone Regions: From Climate To Fish - The Voice Initiative, V Garcon, J Karstensen, A Palacz, Et Al, Kevin C. Weng

VIMS Articles

Multidisciplinary ocean observing activities provide critical ocean information to satisfy ever-changing socioeconomic needs and require coordinated implementation. The upper oxycline (transition between high and low oxygen waters) is fundamentally important for the ecosystem structure and can be a useful proxy for multiple observing objectives connected to eastern boundary systems (EBSs) that neighbor oxygen minimum zones (OMZs). The variability of the oxycline and its impact on the ecosystem (VOICE) initiative demonstrates how societal benefits drive the need for integration and optimization of biological, biogeochemical, and physical components of regional ocean observing related to EBS. In liaison with the Global Ocean Oxygen …

Selectivity Of Two Commercial Dredges Fished In The Northwest Atlantic Sea Scallop Fishery, Sally Roman, David Rudders

VIMS Articles

Size selectivity curves were estimated for two commercial dredge configurations used in the United States Atlantic sea scallop (Placopecten magellanicus) fishery. Traditionally, the New Bedford Style dredge (New Bedford dredge) has been used by the commercial fleet; however, since 2013, the Coonamessett Farm Turtle Deflector Dredge (turtle dredge) has been required seasonally in the Mid-Atlantic region to minimize the capture of sea turtles. This analysis provides estimates of selectivity and relative efficiency for the turtle dredge and the New Bedford dredge. Selectivity information for the turtle dredge is currently unknown, and selectivity for the New Bedford dredge was originally assessed …

A Conservation Palaeobiological Perspective On Chesapeake Bay Oysters, Rowan Lockwood, Roger L. Mann

VIMS Articles

The eastern oyster plays a vital role in estuarine habitats, acting as an ecosystem engineer and improving water quality. Populations of Chesapeake Bay oysters have declined precipitously in recent decades. The fossil record, which preserves 500 000 years of once-thriving reefs, provides a unique opportunity to study pristine reefs to establish a possible baseline for mitigation. For this study, over 900 fossil oysters were examined from three Pleistocene localities in the Chesapeake region. Data on oyster shell lengths, lifespans and population density were assessed. Comparisons to modern Crassostrea virginica, sampled from monitoring surveys of similar environments, reveal that fossil oysters …

Analysing Tropical Elasmobranch Blood Samples In The Field: Blood Stability During Storage And Validation Of The Hemocue® Haemoglobin Analyser, Gail D. Schwieterman, Ian A. Bouyoucos, Kristy Potgieter, Colin A. Simpfendorfer, Richard Brill, Jody L. Rummer

VIMS Articles

Blood samples collected from wild-caught fishes can provide important information regarding the effects of capture (and thus post-release survival) as well as other stressors. Unfortunately, blood samples often cannot be analysed immediately upon sampling, and blood parameters (e.g. blood oxygen levels and acid–base parameters) are known to change with storage duration due to the metabolic activity of the red blood cells. We obtained blood samples from both untreated and stressed individuals of both blacktip reef shark (Carcharhinus melanopterus) and sicklefin lemon shark (Negaprion acutidens) to determine the effects of storage duration on blood pH, haematocrit and …

Minimal Effects Of Oyster Aquaculture On Local Water Quality: Examples From Southern Chesapeake Bay, Jessica Turner, M. Lisa Kellogg, Grace M. Massey, Carl Friedrichs

VIMS Articles

As the oyster aquaculture industry grows and becomes incorporated into management practices, it is important to understand its effects on local environments. This study investigated how water quality and hydrodynamics varied among farms as well as inside versus outside the extent of caged grow-out areas located in southern Chesapeake Bay. Current speed and water quality variables (chlorophyll-a fluorescence, turbidity, and dissolved oxygen) were measured along multiple transects within and adjacent to four oyster farms during two seasons. At the scale of individual aquaculture sites, we were able to detect statistically significant differences in current speed and water quality variables between …

High Salinity Tolerance Of Invasive Blue Catfish Suggests Potential For Further Range Expansion In The Chesapeake Bay Region, Vaskar Nepal, Mary C. Fabrizio

VIMS Articles

In estuaries, salinity is believed to limit the colonization of brackish water habitats by freshwater species. Blue catfish Ictalurus furcatus, recognized as a freshwater species, is an invasive species in tidal rivers of the Chesapeake Bay. Salinity tolerance of this species, though likely to determine its potential range expansion and dispersal in estuarine habitats, is not well-known. To address this issue, we subjected blue catfish to a short-term salinity tolerance experiment and found that this species tolerates salinities higher than most freshwater fishes and that larger blue catfish tolerate elevated salinities for longer periods compared with smaller individuals. Our …

Characterization Of Microsporidian Ameson Herrnkindi Sp. Nov. Infecting Caribbean Spiny Lobsters Panulirus Argus, Hamish J. Small, Gd Stentiford, Dc Behringer, Ma Freeman, Nam Atherley, Kimberly S. Reece, Jeffrey D. Shields

VIMS Articles

The Caribbean spiny lobster Panulirus argus supports a large and valuable fishery in the Caribbean Sea. In 2007-2008, a rare microsporidian parasite with spore characteristics typical of the Ameson genus was detected in 2 spiny lobsters from southeast Florida (FL). However, the parasite species was not confirmed by molecular analyses. To address this deficiency, reported here are structural and molecular data on single lobsters displaying comparable ‘cotton-like’ abdominal muscle containing ovoid microsporidian spores found at different locations in FL in 2014 and 2018 and in Saint Kitts and Nevis Islands in 2017. In the lobster from 2014, multiple life stages …

Comparisons Of Mean Length-Based Mortality Estimators And Age-Structured Models For Six Southeastern Us Stocks, Quang C. Huynh, Nancie J. Cummings, John M. Hoenig

VIMS Articles

Length-based mortality estimators have been developed as alternative assessment methods for data-limited stocks. We compared mortality estimates from three methodologically related mean length-based methods to those from an age-structured model (ASM). We estimated fishing mortality and determined overfishing status, i.e. if F/F_MSY > 1, for six stocks which support important recreational and commercial fisheries in the southeastern United States. The similarities in historical fishing mortality between the length-based methods and the most recent assessments varied among the case studies, but the classification of overfishing status in the terminal year did not differ based on the choice of model …

The Importance Of Antarctic Krill In Biogeochemical Cycles, El Cavan, A Belcher, Sl Hill, S Kawaguchi, S Mccormack, B Meyer, S Nicol, K Schmidt, Deborah K. Steinberg, Ga Tarling, Pw Boyd

VIMS Articles

Antarctic krill (Euphausia superba) are swarming, oceanic crustaceans, up to two inches long, and best known as prey for whales and penguins – but they have another important role. With their large size, high biomass and daily vertical migrations they transport and transform essential nutrients, stimulate primary productivity and influence the carbon sink. Antarctic krill are also fished by the Southern Ocean’s largest fishery. Yet how krill fishing impacts nutrient fertilisation and the carbon sink in the Southern Ocean is poorly understood. Our synthesis shows fishery management should consider the influential biogeochemical role of both adult and larval …

Ecosystem Services Of Restored Oyster Reefs In A Chesapeake Bay Tributary: Abundance And Foraging Of Estuarine Fishes, Bruce Pfirrmann, Rochelle D. Seitz

VIMS Articles

Restoration of oyster reefs in coastal ecosystems may enhance fish and fisheries by providing valuable refuge and foraging habitat, but understanding the effects of restoration requires an improved understanding of fish habitat use and trophic dynamics, coupled with long-term (>5 yr) monitoring of restored habitats. We evaluated the relationship between large (3-5 ha) restored subtidal oyster reefs and mobile estuarine fishes in the Lynnhaven River System (LRS), Virginia, more than 8 yr following reef construction. We compared the (1) diversity, (2) abundance, (3) size, (4) stomach fullness, (5) diet composition, and (6) daily consumption rate of fishes collected from …

A Data Repository For Minimal Effects Of Oyster Aquaculture On Water Quality: Examples From Southern Chesapeake Bay, Jessica Turner, Grace M. Massey, M. Lisa Kellogg, Carl Friedrichs

Data

The objective of this study was to quantify the effects of oyster aquaculture on water quality, sediment quality, and hydrodynamics at select sites in southern Chesapeake Bay. To this end, information was gathered over the course of approximately one year from February 2017 to October 2017 at four operating commercial farms. Farms were sampled during spring, summer, and fall seasons during times of oyster filtration activity when temperatures were greater than 10^oC. Aquaculture sites differed in environmental setting, in terms of their exposure to waves and resulting sediment characteristics. Sites had mesohaline salinities (ranging from 15-22 psu) and …

James River Water Quality Model Refinement And Scenario Simulations, Jian Shen, Qubin Qin

Reports

This project was part of the Virginia Department of Environmental Quality’s (DEQ) study to evaluate the protectiveness of chlorophyll criteria and consider potential criteria revisions, along with implications for the James River portion of the Chesapeake Bay TMDL.

Impacts Of Sea Level Rise On Hypoxia In The Chesapeake Bay: A Model Intercomparison, Pierre St-Laurent, Marjorie A.M. Friedrichs, Ming Li, Wenfei Ni

Reports

Over recent years a number of studies have examined the effects of sea level rise (SLR) on hypoxia in Chesapeake Bay. However, variations in the methodology, the years considered, and the metrics reported made comparisons between these studies difficult. To clarify the effects of SLR on the Bay’s hypoxia, we present an intercomparison between four numerical models following a common methodology. The models share the riverine fluxes, baseline period (1991–1995), and consider the same three scenarios of SLR: an increase in sea level of 0.17m, 0.50m, and 1.00m (representative of years 2025, 2050 and 2100, respectively). SLR is the sole …

Temporal, Spatial, And Biological Variation Of Nematode Epidemiology In American Eels, Zt Warshafsky, Troy D. Tuckey, Wk Vogelbein, Rj Latour, Ar Wargo

VIMS Articles

This is the accepted manuscript version of the article.

American eels (Anguilla rostrata) are infected by the non-native parasitic nematode Anguillicoloides crassus, which can cause severe swim bladder damage. We investigated epidemiology of A. crassus to better understand its population-level effects on American eels. Nematode prevalence, abundance, and intensity and swim bladder damage were quantified in glass eels, elvers, and yellow eels from the lower Chesapeake Bay and related to season of capture, river system, and total length. Age-variant force-of-infection and disease-associated mortality were estimated using a three-state irreversible disease model, which assumes recovery is not possible. Results showed glass …

Scientific Considerations For Acidification Monitoring In The Us Mid-Atlantic Region, Ka Goldsmith, S Lau, Et Al, Eh Shadwick, Et Al

VIMS Articles

Coastal and ocean acidification has the potential to cause significant environmental and societal impacts. Monitoring carbonate chemistry parameters over spatial and temporal scales is challenging, especially with limited resources. A lack of monitoring data can lead to a limited understanding of real-world conditions. Without such data, robust experimental and model design is challenging, and the identification and understanding of episodic acidification events is nearly impossible. We present considerations for resource managers, academia, and industry professionals who are currently developing acidification monitoring programs in the Mid-Atlantic region. We highlight the following considerations for deliberation: 1) leverage existing infrastructure to include multiple …

Georges Bank Yellowtail Flounder Estimates From Vims Industry-Based Scallop Dredge Surveys Of Closed Area Ii And Surrounds, Sally Roman, David Rudders

Reports

This document is the final report submitted to the New England Fishery Management Council (NEFMC) for the Georges Bank Yellowtail Flounder Estimates from VIMS Industry-Based Scallop Dredge Surveys of Closed Area II and Surrounds project. The NEFMC funded this project in April 2019, with an objective of synthesizing existing VIMS dredge survey data with respect to the Georges Bank stock of yellowtail flounder (Limanda ferruginea). Analysis consisted of an examination of existing catch data from VIMS dredge surveys of Georges Bank Closed Area II and surrounds from 2005 to 2019.

Results For The 2019 Vims Industry Cooperative Surveys Of The Mid-Atlantic, Nantucket Lightship Closed Area, Closed Area I, And Closed Area Ii Resource Areas, David Rudders, Sally Roman, Erin Mohr, Kaitlyn Clark

Reports

The Virginia Institute of Marine Science (VIMS) conducted high resolution sea scallop dredge surveys of the entire Mid-Atlantic (MAB), the Nantucket Lightship (NLCA), Closed Area I (CAI), and Closed Area II (CAII) during May–July 2019. These surveys were funded by the Sea Scallop Research Set- Aside Program (RSA). Exploitable biomass for each survey is shown in Table 1 for each spatially explicit SAMS Area (Scallop Area Management Simulator). SAMS Areas represent management relevant spatial subunits of the resource and explicitly account for differences in recruitment, vital rates, and fishing effort in the forward projection of survey information. Maps of SAMS …

Bacterial And Archaeal Specific-Predation In The North Atlantic Basin, Lm Seyler, S Tuorto, Lr Mcguinness, Dl Gong, Lj Kerkof

VIMS Articles

Stable isotope probing (SIP) was used to track prokaryotic and eukaryotic carbon uptake along a meridional transect (Long. 52°W) in the North Atlantic to assess if ¹³C-resource partitioning between bacteria and archaea and ¹³C-labeled eukaryotic predators could be detected. One-liter SIP microcosms were amended with ¹³C-acetate or ¹³C-urea and incubated for 48 h. Our data indicated archaea often outcompeted bacteria for ¹³C-urea while both archaea and bacteria could incorporate ¹³C-acetate. This ¹³C label could also be tracked into eukaryotic microbes. The largest number of ¹³C-labeled eukaryotic OTUs, and the greatest percentage of …

Global Change Effects On Plant Communities Are Magnified By Time And The Number Of Global Change Factors Imposed, Kj Komatsu, Ml Avolio, Et Al, David S. Johnson, Et Al

VIMS Articles

Global change drivers (GCDs) are expected to alter community structure and consequently, the services that ecosystems provide. Yet, few experimental investigations have examined effects of GCDs on plant community structure across multiple ecosystem types, and those that do exist present conflicting patterns. In an unprecedented global synthesis of over 100 experiments that manipulated factors linked to GCDs, we show that herbaceous plant community responses depend on experimental manipulation length and number of factors manipulated. We found that plant communities are fairly resistant to experimentally manipulated GCDs in the short term (< 10 y). In contrast, long-term (>= 10 y) experiments show increasing community divergence of …

Evaluating Recruitment Of American Eel, Anguilla Rostrata, In The Potomac River (Spring 2019), Troy D. Tuckey, Mary C. Fabrizio

Reports

American Eel (Anguilla rostrata) is a valuable commercial species along the Atlantic coast of North America from New Brunswick to Florida. Landings from Chesapeake Bay typically represent 60% of the annual United States commercial harvest (ASMFC 2012). American Eel is also important to the recreational fishery as it is often used live as bait for Striped Bass (Morone saxatilis) and Cobia (Rachycentron canadum). In 2016, Chesapeake Bay commercial landings of American Eel (728,717 lbs) were 78% of the U.S. landings (personal communication from the National Marine Fisheries Service, Fisheries Statistics Division). Since the 1980s, harvest along the U.S. Atlantic Coast …

Oyster Reef Ecosystem Services: Macrofauna Utilization Of Restored Oyster Reefs - Harris Creek, Maryland, Usa, M. Lisa Kellogg, Jennifer C. Dreyer, Cate Turner, Manisha Pant, Paige G. Ross, Alan Birch, Sean Fate, Edward Smth, Kennedy Paynter

Reports

Oyster reefs provide habitat for a variety of macrofauna species. Our studies focused on the relationship between oyster tissue biomass density and reef-associated macrofauna biomass density. Studies were conducted in 2015-2017 and sites encompassed the majority of the area in which restoration activities were conducted with the Harris Creek Oyster Sanctuary in Maryland. Results presented in this report focus on: 1) interactions between oyster biomass density and season in determining macrofauna biomass, 2) responses of macrofauna to oyster biomass densities below “threshold” levels (0-14.9 g DW m-2) and between threshold and “target” levels (15-49.9 g DW m-2) defined in the …

Evaluation Of The Stock Structure Of Cobia (Rachycentron Canadum) In The Southeastern United States By Using Dart-Tag And Genetics Data, M Perkinson, T Darden, M Jamison, Mj Walker, Mr Denson, J Franks, R Hendon, Susanna Musick, Es Orbesen

VIMS Articles

Available tag-recapture and population genetics data for cobia (Rachycentron canadum) in the south-eastern United States were evaluated to provide information on population structure and determine the geographic boundary between stocks in the Gulf of Mexico and the Atlantic Ocean. The movements of 1750 cobia were evaluated on the basis of assigned tagging and recapture zones. Genetic samples from an additional 2796 cobia collected during the presumed spawning season were genotyped at 10 microsatellite loci, and standard population genetic statistical analyses were applied to the resulting sample data set. Tag- recapture results indicate that cobia tagged south of Cape Canaveral, Florida, …

It’S About Time: A Synthesis Of Changing Phenology In The Gulf Of Maine Ecosystem, Md Staudinger, Ke Mills, Et Al, David S. Johnson, Et Al

VIMS Articles

The timing of recurring biological and seasonal environmental events is changing on a global scale relative to temperature and other climate drivers. This study considers the Gulf of Maine ecosystem, a region of high social and ecological importance in the Northwest Atlantic Ocean and synthesizes current knowledge of (a) key seasonal processes, patterns, and events; (b) direct evidence for shifts in timing; (c) implications of phenological responses for linked ecological-human systems; and (d) potential phenology-focused adaptation strategies and actions. Twenty studies demonstrated shifts in timing of regional marine organisms and seasonal environmental events. The most common response was earlier timing, …

Development Of Helical, Fish-Inspired Cross-Step Filter For Collecting Harmful Algae, Adam Schroeder, Lauren Marshall, Brian Trease, Anna Becker, S. Laurie Sanderson

Arts & Sciences Articles

A new filter was developed to collect harmful algae colonies by adapting the cross-step filtration structures and mechanisms discovered recently in filter-feeding fish. Extending beyond previously published models that closely emulated the basic morphology of the fish, the new cross-step filter's major innovations are helical slots, radial symmetry, and rotation as an active anti-clogging mechanism. These innovations enable the transport of concentrated particles to the downstream end of the filter. This advance was made possible by recognizing that biologically imposed constraints such as bilateral symmetry do not apply to human-made filters. The use of helical slots was developed in a …

Combined Effects Of Acute Temperature Change And Elevated Pco2 On The Metabolic Rates And Hypoxia Tolerances Of Clearnose Skate (Rostaraja Eglanteria), Summer Flounder (Paralichthys Dentatus), And Thorny Skate (Amblyraja Radiata), Gail D. Schwieterman, Daniel P. Crear, Brooke N. Anderson, Danielle R. Lavoie, James A. Sulikowski, Peter G. Bushnell, Richard Brill

VIMS Articles

Understanding how rising temperatures, ocean acidification, and hypoxia affect the performance of coastal fishes is essential to predicting species-specific responses to climate change. Although a population’s habitat influences physiological performance, little work has explicitly examined the multi-stressor responses of species from habitats differing in natural variability. Here, clearnose skate (Rostaraja eglanteria) and summer flounder (Paralichthys dentatus) from mid-Atlantic estuaries, and thorny skate (Amblyraja radiata) from the Gulf of Maine, were acutely exposed to current and projected temperatures (20, 24, or 28 °C; 22 or 30 °C; and 9, 13, or 15 °C, respectively) and acidification conditions (pH 7.8 or 7.4). …

Integrated Assessment Of Oyster Reef Ecosystem Services: Quantifying Denitrification Rates And Nutrient Fluxes, Jeffrey C. Cornwell, Michael S. Owens, Melanie Jackson, M.Lisa Kellogg

Reports

Fluxes of N2-N (denitrification), dissolved ammonium, nitrate plus nitrite, and dissolved oxygen were determined at teh 350 acre oyster restoration project at Harris Creek, Maryland. The ex situ incubation approach involved adding oyster communities to embedded trays for ~1 mo incubating the trays under dark and light conditions for 1-2 hour time courses for gas and solute sampling, adn determination of the rates of gas and solute exchange for 136 individual reef tray incubations. Reef exchange rates were compared to rates of sediment water exchange in core incubations throughout Harris Creek and in reef-adjacent environments.

Toward A Coordinated Global Observing System For Seagrasses And Marine Macroalgae, J. Emmett Duffy, L. Benedetti-Cecchi, Et Al, Robert J. Orth, Et Al

VIMS Articles

In coastal waters around the world, the dominant primary producers are benthic macrophytes, including seagrasses and macroalgae, that provide habitat structure and food for diverse and abundant biological communities and drive ecosystem processes. Seagrass meadows and macroalgal forests play key roles for coastal societies, contributing to fishery yields, storm protection, biogeochemical cycling and storage, and important cultural values. These socio-economically valuable services are threatened worldwide by human activities, with substantial areas of seagrass and macroalgal forests lost over the last half-century. Tracking the status and trends in marine macrophyte cover and quality is an emerging priority for ocean and coastal …

Mechanisms Involving Sensory Pathway Steps Inform Impacts Of Global Climate Change On Ecological Processes, Emily B. Rivest, Brittany Jellison, Gabriel Ng, Et Al

VIMS Articles

Human-caused environmental change will have significant non-lethal and indirect impacts on organisms due to altered sensory pathways, with consequences for ecological interactions. While a growing body of work addresses how global ocean change can impair the way organisms obtain and use information to direct their behavior, these efforts have typically focused on one step of the pathway (e.g., reception of a cue/signal), one sensory modality (e.g., visual), or one environmental factor (e.g., temperature). An integrated view of how aspects of environmental change will impact multiple sensory pathways and related ecological processes is needed to better anticipate broader consequences for marine …