Life Sciences Commons^™

Macroinvertebrate Community Composition, Food Web Structure, And Emergence Rate In Neotropical Cloud-Forest Streams In Mindo, Ecuador, Anna M. Harris

Masters Theses

Tropical cloud forest streams are one of the most threatened and understudied ecosystems in the world. Understanding how these ecosystems function is essential for effective conservation. In this study, macroinvertebrate community composition, functional feeding group analysis, ecosystem attributes, and physicochemical parameters were used to evaluate biophysical stream conditions of 3 low-order Neotropical cloud forest streams at Reserva Las Gralarias in Mindo, Ecuador. Additionally, food web structure was analyzed via stable isotope analysis and aquatic insect emergence rate was also examined. As stream size increased from 1st to 3rd order, the macroinvertebrate communities shifted from being collector-gatherer dominated (65.2 to 29.8%, …

Inquiry-Based Biotechnology Education For Kent Intermediate School District Early College Program, Meāgan N. Treadway

Masters Theses

Growth in the field of biotechnology, combined with the ability to access information instantaneously, requires a new model of science education that will nurture deeper understanding and higher order thinking to develop a scientifically literate population. Inquirybased learning is a student-centered model built on the theoretical framework of constructivism, which allows students to learn in a way that reflects how scientists come to understand the natural world. This project aimed to address the need for an inquiry-based biotechnology curriculum in a local Early College program by developing, piloting, revising, and implementing an inquiry-based biotechnology unit while simultaneously evaluating the impact …

Physiology And Genetics Shape The Microbiome Of A Seabird Species (Oceanodroma Leucorhoa) More Than Environmental And Social Factors, Douglas Steven Pearce

Masters Theses

The microbiome provides multiple benefits to animal hosts that can profoundly impact health and behavior. Microbiomes are well-characterized in humans and animals in controlled settings, yet assessments of wild bird microbial communities remain vastly understudied. This study examines the multiple factors that affect the microbiome of a burrow-nesting Procellariiform bird species, Leach’s storm-petrel. 16S rRNA-based Illumina Mi-Seq analyses are used to assess the composition and structure of bird and burrow-associated bacterial communities. Results indicate that sex and skin site contribute to bird-associated bacterial community variation, and MHC heterozygosity impacts these bacterial assemblages in a sex and site-specific manner, potentially having …

Characterization Of Fusarium Species And Alternaria Alternata, And Their Effects On Switchgrass Health And Chemical Components, Sara Beth Collins

Masters Theses

Panicum virgatum L., readily referred to as Switchgrass, is a perennial warm-season bunch grass, used as an alternative energy source for biofuel production. There is insufficient research on switchgrass pathogens, and is expected that an increase in disease pressure will result as more land is reserved for this perennial crop. The purpose of this research was to identify and characterize pathogenic Alternaria alternata and Fusarium species on Switchgrass (Panicum virgatum L.), and to evaluate their impact on stand establishment and plant health. Molecular identifications of fungal isolates obtained from infected commercial switchgrass seed yielded eight species (A. alternata, …

Beneficial Effects Of Naringenin And Indomethacin On White And Brown Adipocytes, Jamie Ann Kearns

Masters Theses

As obesity continues to grow and medical costs in the United States are estimated at $147 billion annually, novel ways to prevent and treat obesity are needed. One approach is to promote thermogenesis to improve energy balance by increasing the activities of thermogenic brown and beige adipocytes.

Naringenin, a citrus flavanone, has been shown to act as anti-inflammatory and lipid lowering agent as well as activate PPARgamma. However, it is unclear whether it can activate thermogenic activity in white adipocytes, i.e., promote formation of beige adipocytes. Indomethacin (INDO) is an FDA approved drug used to treat pain related to inflammation …

A Population Genetics Study Of Discula Destructiva, The Causal Agent Of Dogwood Anthracnose, Kristie Lynn Mantooth

Masters Theses

Flowering dogwood (Cornus florida L.) is prized as an ornamental and contributes millions of dollars to the economy through tourism and sales each year. Dogwood anthracnose, caused by Discula destructiva Redlin, was observed in the late 1970s on the east and west coasts of the United States and by 1991 had quickly spread throughout much of the native ranges of C. florida and C. nuttalli. The objectives of this study were to investigate the genetic diversity and population structure of D. destructiva using simple sequence repeats (SSRs), and to test the cross-transferability of these markers to other Discula …

Rapid Molecular Detection And Population Genetics Of Pityophthorus Juglandis, A Vector Of Thousand Cankers Disease In Juglans Spp., Emel Oren

Masters Theses

Thousand Cankers Disease (TCD) is a disease complex involving the fungal pathogen Geosmithia morbida, an insect vector Pityophthorus juglandis, and the hosts, Juglans spp. and Pterocarya spp. Signs and symptoms of TCD include crown thinning due to branch dieback, yellowing and wilting of the leaves, appearance of epicormic shoots, numerous entrance/exit holes, gallery formation by P. juglandis, and the development of small, dark brown cankers underneath the bark. TCD originally described from western U.S., has now expanded to eastern U.S. and northwestern Italy. The disease complex is often difficult to diagnose due to the absence of symptoms …

Effect Of Omega-3 Polyunsaturated Fatty Acid (N-3 Pufa) Supplementation To Lactating Sows On Growth And Indicators Of Stress In The Post-Weaned Pig, John M. Mcafee

Masters Theses

The first experiment was designed to determine the concentration of protected fish oil product (PFO), as Gromega^TM, to be added that would sufficiently decrease the polyunsaturated fatty acid (PUFA) ratio in the sows’ milk and colostrum. Of the 3 diets tested (0.25%, 0.5% and 1%) with a control (0% PFO), only the 1% PFO diet had an effect on the PUFA concentrations. The docosahexaenoic acid (DHA) concentration tended (P = 0.05) to be greater in the 1% PFO diet for both colostrum and milk samples. A second experiment was designed to …

Intercanine Distance Used As A Measure To Rule Out Biters In Bite Mark Forensics, Alana Joy Scudiere Ohana

Masters Theses

The science of identification by bite mark analysis has recently been called into serious question. (Reesu and Brown 2016) Human dentition is truly variable, but often not unique. When animal bites are considered, a proper ID of the perpetrator is nearly impossible. Primary distortion (when the bite is made) and secondary distortion (during decomposition or healing) both further disrupt landmarks that might be used for identification. (Sheasby and MacDonald 2001) Using only ink marks and intercanine distance on live subjects, this study attempts to determine maximum distortion possible for a variety of bite mark locations on skin. (Pretty and Sweet …

Follicular Dynamics In Insulin Resistant Mares, Julio Cesar Prado

Masters Theses

Obesity and insulin resistance have been linked to prolonged interovulatory period, aberrations in the estrous cycle, and continuous reproductive activity during the non-breeding season. EMS has been determined to influence the intrafollicular environment of mare ovaries. In humans, insulin resistance has been linked to polycystic ovaries as part of Polycystic Ovarian Syndrome (PCOS). A study was conducted to determine 1) the impact of insulin resistance on follicle growth and size at ovulation, and 2) whether predicted ovulatory follicles respond to hCG administration in Insulin-resistant (IR) mares. Mares were selected for the study based on insulin sensitivity and separated into an …

Effects Of Wider Step Width On Knee Biomechanics In Obese And Healthy-Weight Participants During Stair Ascent, Derek Scott Yocum

Masters Theses

An increased likelihood of developing obesity-related knee osteoarthritis may be associated with increased peak internal knee abduction moment. Increases in step width may act to reduce this moment. This study focused on how step width influenced the knee joint during stair ascent by healthy and obese participants. Participants ascended stairs while walking at their preferred speed and under one of two step width conditions – preferred and increased. Obese participants experienced greater mediolateral and vertical ground reaction forces (GRFs), as well as increased peak knee extensor moments and push-off peak internal knee adduction moments. The findings of this study indicate …

Crop Tree Enhancement Of Green Ash (Fraxinus Pennsylvanica) In A West Tennessee Hardwood Bottom, John Luke Bowers

Masters Theses

Crop tree enhancement is a forest management technique undertaken to maintain, enhance, and improve the species composition, growth rate, and stem quality of stands so that management objectives may be better and more quickly accomplished. In 1996, a crop tree enhancement study involving green ash (Fraxinus pennsylvanica) in a 16-year-old, naturally regenerated, mixed-species, pole-sized, bottomland hardwood stand was initiated at Ames Plantation in West TN. Treatments included a crown-touching release, a crown-touching release plus one-time fertilizer application, and a control, applied in a randomized block design with five 25-crop tree repetitions of the three treatments. Initial crop tree …

Comparison Of Mesophyll Protoplast Isolation And Transformation Between Panicum Virgatum And Panicum Hallii, Andrea Grace Collins

Masters Theses

Protoplasts are appropriate targets for genome editing, DNA functional screens and transgenesis. This project focuses on the comparison of inexpensive mesophyll protoplast isolation via the use of food-grade enzymes and transformation between diploid Panicum hallii Vasey (PAH) and polyploid cellulosic feedstock Panicum virgatum L (switchgrass), a relative of PAH. PAH has great potential as a C4 model species for crop and bioenergy research. Here an inexpensive switchgrass and PAH mesophyll protoplast isolation and transformation system was developed; the first protoplast system for PAH. Using low-cost commercial food-grade enzymes, a cost reduction of ~1000-fold was achieved compared to traditional protoplast isolating …

Lignin Maximization: Analyzing The Impact Of Different Feedstocks And Feedstock Ratios Using Organosolv Fractionation, Marc Banholzer

Masters Theses

Over-exploitation of fossil fuels coupled with increasing pressure to reduce carbon emissions are prompting a transition from conventional petrochemical feedstocks to sustainable and renewable sourced carbon. The use of lignocellulosic biomass as a feedstock for integrated biorefining is of current high interest, as separation into its component parts affords process streams of cellulose, hemicellulose and lignin, each of which can serve as a starting point for the production of biobased chemicals and fuels. Given the large number of potential sources of lignocellulosic feedstocks, the biorefinery will need to adapt to the supplies available over a normal growing season. Of particular …

Effect Of Varying Rumen Degradable And Undegradable Protein On Milk Production And Nitrogen Efficiency In Lactating Dairy Cows Under Summer Conditions, Jeffrey D. Kaufman

Masters Theses

The objective is to determine the effect of reducing nitrogen input through feeding low rumen degradable protein (RDP) and rumen undegradable protein (RUP) proportions on milk production, nitrogen efficiency and metabolism in heat-stressed cows. Forty-eight mid-lactating, Holstein cows were assigned to treatments using a randomized block design in a 2x2 factorial arrangement of treatments (n = 12/treatment). Treatments included two levels of RDP (10 and 8%) and two levels of RUP (8 and 6%). From d 1 to 21, a common diet (10% RDP-8% RUP) was fed to cows followed with their respective treatment diets fed from d 22 to …

Reasons Youth Choose Or Do Not Choose To Be Involved In 4-H Livestock Projects In Tennessee, Leigh Erin Fuson

Masters Theses

The purpose of this study was to find reasons youth choose or do not choose to be involved in 4-H livestock projects. Livestock projects are an important part of 4-H youth development because they teach life skills like responsibility and hard work. However, many youth are unable to participate or do not have the interest. This study sought to discover what motivates some youth to become involved in a livestock project and why others do not.

Focus groups were used as the data collection tool. Two groups of youth livestock participants and two groups of non-livestock participants were utilized. Themes …

Understanding Stakeholder Attitudes And Involvement In Habitat Conservation Plans And The Endangered Species Act, Kyle Andrew Rodgers

Masters Theses

The Endangered Species Act (ESA), established in 1973, was a landmark piece of environmental legislation and remains the standard for endangered species conservation. Implementation of the ESA has often been framed as pitting economic development against species conservation, inciting passions for and against endangered species conservation. The strength of opposing public opinions is highlighted by high-profile controversies such as those around the snail darter, northern spotted owl and the greater sage grouse. In an attempt to reduce conflict, the US Fish and Wildlife Service (USFWS) increasingly seeks to utilize collaborative, stakeholder-based processes that address stakeholder interests, attitudes, and values.

In …

Assessing Tennessee Livestock Producers' Awareness, Attitudes And Perceptions Of Right-Of-Way Hay Harvesting, Sarah Joy Maccaro

Masters Theses

In the state of Tennessee, statute 54-5-134, cutting hay along controlled access highway right-of-way, gives Tennessee agriculturalists the right to harvest hay along interstate medians and shoulders. Current maintenance is contracted out to private mowing companies and paid for by Tennessee taxpayers. Relatively few studies have been published on the topic of right-of-way hay harvesting, so this study was preliminary in nature. Through a questionnaire, this study sought to assess Hickman, Dickson, Williamson, Wilson and Rutherford county livestock producers’ current awareness, attitudes, and barriers concerning right-of-way hay harvesting as well as to conduct economic impact analyses to determine producers’ willingness …

Effects Of Synthetic Turf And Shockpads On Impact Attenuation Related Biomechanics During Drop Landing, Hang Qu

Masters Theses

Synthetic turf has been widely utilized in sports since 1964. Discrepancies, however, in injury incidence on synthetic turf and natural grass have been reported throughout studies. Adding a shock pad under synthetic turf carpet is claimed to aid in energy absorption and decrease impact loading. Although some studies have conducted materials tests and compared mechanical characteristics of synthetic turf with different shock pads, no studies have examined biomechanical characteristics of impact related human movements on an infilled synthetic turf system with different underlying shock pads. The purpose of this research was to investigate effects of an infilled synthetic turf with …

Switchgrass Extractives Have Potential As A Value-Added Antimicrobial Against Plant Pathogens And Foodborne Pathogens, Alexander Ian Bruce

Masters Theses

Panicum virgatum (switchgrass), a perennial grass native to North America, is a leading biomass feedstock candidate for the manufacture of cellulosic ethanol. Switchgrass is considered a viable option for biofuel production due to its cheap production cost and ability to grow on marginal land. Biofuel derived from switchgrass has been shown to be very energy efficient, producing 540% more renewable energy versus nonrenewable energy expended. Switchgrass-derived biofuel is also estimated to have greenhouse gas emissions that are 94% lower than emissions from gasoline (Schmer et al 2008). Biofuels are created through biochemical processes that utilize various enzymes and microorganisms for …

The Application Of Chitosan On An Experimental Infection Of Pseudogymnoascus Destructans Increases Survival In Little Brown Bats, Torin C. Kulhanek

Masters Theses

This research builds upon a previous study conducted that tested the efficacy of chitosan on experimentally-infected bats as a laboratory model of White-nose syndrome. White-nose syndrome is a fungal infection caused by Pseudogymnoascus destructans, formerly known as Geomyces destructans. The pathology of this disease is not yet fully understood, but it is devastating bats throughout Northeastern America and continues to spread. Here we tested multiple application time points and concentrations of chitosan on the wings of experimentally-infected bats and compared them with the controls. We grossly viewed the wings first to get a sense of the amount of …

Encapsulation Of Probiotic Microorganisms In Food-Grade Hydrogel Microbeads For Improving Long-Term Storage And Oral Delivery, Timothy W. Yeung

Masters Theses

Probiotics die over time during processing, storage and digestion, resulting in reduced health benefits to the consumer. Microencapsulation of microorganisms is an effective way to improve probiotic viability by restricting cell exposure to extreme conditions through the gastrointestinal tract until release in the colon. In this work, appearance and survival of encapsulated probiotic species from two genera was explored. Lactococcus lactis and Bifidobacterium longum were suspended in calcium alginate microbeads by spraying droplets of alginate-probiotic mixture into calcium chloride solution. This produced uniformly shaped transparent microbeads with high encapsulation yield. Encapsulating Lactococcus lactis extended viability during dry room temperature storage. …

Investigate The Interactions Between Silver Nanoparticles And Spinach Leaf By Surface Enhanced Raman Spectroscopic Mapping, Zhiyun Zhang

Masters Theses

Owing to their increasing application and potential toxicity, engineered nanoparticles (ENPs) have been considered as a potential agricultural contaminant that may pose unknown risk to human beings. However, many techniques require invasive and complicated sample preparation procedures to detect and characterize engineered nanomaterials in complex matrices. In the first part of this thesis, we present a non-destructive and label-free approach based on surface enhanced Raman spectroscopic (SERS) mapping technique to qualitatively detect and characterize gold nanoparticles (AuNPs), on and in spinach leaves in situ. We were able to detect the clearly enhanced signals from AuNPs at 15 to 125 nm …

Modifications Of Myofilament Structure And Function During Global Myocardial Ischemia, Mike K. Woodward

Masters Theses

Cardiac arrest is a prevalent condition with a poor prognosis, attributable in part to persistent myocardial dysfunction following resuscitation. The molecular basis of this dysfunction remains unclear. We induced cardiac arrest in a porcine model of acute sudden death and assessed the impact of ischemia and reperfusion on the molecular function of isolated cardiac contractile proteins. Cardiac arrest was electrically induced, left untreated for 12 min, and followed by a resuscitation protocol. With successful resuscitations, the heart was reperfused for 2 h (IR2) and the muscle harvested. In failed resuscitations, tissue samples were taken following the failed efforts (IDNR). Actin …

Utilizing Nutritive Sweeteners To Control Lipid Oxidation In Low Moisture Baked Goods, Samantha Vieira

Masters Theses

In this study, we determined the effect of nutritive sweeteners at 0 to 0.50 moles/kg on lipid oxidation in a model cookie system. Confocal microscopy using Bodipy 493 as a fat soluble dye showed that the fat formed a continuous phase surrounding the starch granules regardless of sugar type. The impact of glucose concentration on lipid oxidation was monitored by lipid hydroperoxides and headspace hexanal during storage at 55°C. Low concentrations of glucose (0.09) were strong inhibitors. At equal molar concentrations, reducing sugars (glucose and fructose) inhibited lipid oxidation, greater than a two months increase in lag phase compared to …

Probiotics As A Treatment For Increased Nighttime Activity In Rhesus Macaques (Macaca Mulatta) Displaying Self-Injurious Behavior, Lauren L. Stanwicks

Masters Theses

Self-injurious behavior (SIB) is a behavioral pathology seen in a small percentage of humans and non-human primates. In one previous study, macaques with SIB had more sleep disruption than controls, but observations were limited. Two studies were conducted: a baseline study to investigate nighttime activity in rhesus macaques (Macaca mulatta) displaying SIB and controls, and a probiotic study to assess probiotic Bifidobacterium infantis 35624 for high nighttime activity. Subjects were 13 rhesus macaques, 5 with SIB (3 females; 1 SIB). Videocapture of Nighttime Activity (VNRA) was developed to record in complete darkness. IR-receptive webcams were connected to a …

Trypanosoma Brucei Mitochondrial Dna Polib Cell Cycle Localization And Effect On Polic When Polib Is Depleted, Sylvia L. Rivera

Masters Theses

Trypanosoma brucei is the causative agent of Human African Trypanosomiasis (HAT), also known as African sleeping sickness. T. brucei is unique in several ways that distinguish this organism from other eukaryotes. One of the unique features of T. brucei is the organism’s mitochondrial DNA, which is organized in a complex structure called kinetoplast DNA (kDNA). Since kDNA is unique to the kinetoplastids, kDNA may serve as a good drug target against T. brucei. Previews studies have shown that kDNA has 4 different family A mitochondrial DNA polymerases. Three of these mitochondrial DNA polymerases (POLIB, POLIC, and POLID) are essential …

Characterizing The Inhibition Of Katanin Using Tubulin Carboxy-Terminal Tail Constructs, Corey E. Reed

Masters Theses

Understanding how the cellular cytoskeleton is maintained and regulated is important to elucidate the functions of many structures such as the mitotic spindle, cilia and flagella. Katanin p60, microtubule-severing enzymes from the ATPase associated with cellular activities (AAA+) family, has previously been shown in our lab to be inhibited by free tubulin as well as α- and β-tubulin carboxy-terminal tail (CTT) constructs. Here we investigate the inhibition ability of several different tubulin CTT sequences. We quantify the effect of the addition of these constructs on the severing and binding activity of katanin. We find that some constructs inhibit katanin better …

Ecological Consequences Of Lost Anadromous Forage Fish In Freshwater Ecosystems, Steven R. Mattocks

Masters Theses

Beginning in the early 1600s, dam construction in New England obstructed anadromous fish access to spawning grounds during migration. As a result, anadromous forage fish populations have declined, which has impacted freshwater, marine, and terrestrial ecosystems. To determine the impacts of dams on anadromous forage fish and freshwater ecosystems, I used historical and current data to estimate population changes in alewives (Alosa pseudoharengus) from 1600-1900. A significant reduction in spawning habitat occurred in New England as a result of 1,642 dams constructed between 1600 and 1900, resulting in 14.8% and 16.6% lake and stream habitat remaining by 1900, …

River Herring Conservation In Freshwater: Investigating Fish Reproductive Success And The Educational Value Of Citizen Monitoring Programs, Meghna Marjadi

Masters Theses

Over the last century anadromous alewife (Alosa psuedoharengus) and blueback herring (Alosa aestivalis), collectively called river herring, suffered drastic declines throughout their range from Newfoundland (Canada) to North Carolina (USA). A 2011 petition to include river herring in the Endangered Species Act (ESA) was rejected, partly due to inadequate information towards identifying coast-wide population status. Additionally, knowledge gaps were identified with basic ecology of the river herring life cycle in freshwater, including species reproductive strategies. In Chapter 2, I investigated how body size, spawning arrival time, and sex influence river herring reproductive success. I collaborated with …