Life Sciences Commons^™

Data From: Yellow Air Day Advisory Study, Arthur J. Caplan

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Using a dataset consisting of daily vehicle trips, PM2.5 concentrations, along with a host of climactic control variables, we test the hypothesis that “yellow air day” advisories provided by the Utah Division of Air Quality resulted in subsequent reductions in vehicle trips taken during northern Utah’s winter-inversion seasons in the early 2000s. Winter inversions occur in northern Utah when climactic conditions are such that PM2.5 concentrations (derived mainly from vehicle emissions) become trapped in the lower atmosphere, leading to unhealthy air quality (concentrations of at least 35 µg/m3) over a span of what are called “red air days”. When concentrations …

Mobile Elements Shape Plastome Evolution In Ferns, Tanner A. Robison, Amanda L. Grusz, Paul G. Wolf, Jeffrey P. Mower, Blake D. Fauskee, Karla Sosa, Eric Schuettpelz

Biology Faculty Publications

Plastid genomes display remarkable organizational stability over evolutionary time. From green algae to angiosperms, most plastid genomes are largely collinear, with only a few cases of inversion, gene loss, or, in extremely rare cases, gene addition. These plastome insertions are mostly clade-specific and are typically of nuclear or mitochondrial origin. Here, we expand on these findings and present the first family-level survey of plastome evolution in ferns, revealing a novel suite of dynamic mobile elements. Comparative plastome analyses of the Pteridaceae expose several mobile open reading frames that vary in sequence length, insertion site, and configuration among sampled taxa. Even …

Mobile Elements Shape Plastome Evolution In Ferns, Tanner A. Robison, Amanda L. Grusz, Paul G. Wolf, Jeffrey P. Mower, Blake D. Fauskee, Karla Sosa, Eric Schuettpelz

Department of Agronomy and Horticulture: Faculty Publications

Plastid genomes display remarkable organizational stability over evolutionary time. From green algae to angiosperms, most plastid genomes are largely collinear, with only a few cases of inversion, gene loss, or, in extremely rare cases, gene addition. These plastome insertions are mostly clade-specific and are typically of nuclear or mitochondrial origin. Here, we expand on these findings and present the first family-level survey of plastome evolution in ferns, revealing a novel suite of dynamic mobile elements. Comparative plastome analyses of the Preridaceae expose several mobile open reading frames that vary in sequence length, insertion site, and configuration among sampled taxa. Even …

Lycophyte Plastid Genomics: Extreme Variation In Gc, Gene And Intron Content And Multiple Inversions Between A Direct And Inverted Orientation Of The Rrna Repeat, Jeffrey P. Mower, Peng-Fei Ma, Felix Grewe, Alex Taylor, Todd P. Michael, Robert Vanburen, Yin-Long Qiu

Center for Plant Science Innovation: Faculty and Staff Publications

Lycophytes are a key group for understanding vascular plant evolution. Lycophyte plastomes are highly distinct, indicating a dynamic evolutionary history, but detailed evaluation is hindered by the limited availability of sequences. Eight diverse plastomes were sequenced to assess variation in structure and functional content across lycophytes. Lycopodiaceae plastomes have remained largely unchanged compared with the common ancestor of land plants, whereas plastome evolution in Isoetes and especially Selaginella is highly dynamic. Selaginella plastomes have the highest GC content and fewest genes and introns of any photosynthetic land plant. Uniquely, the canonical inverted repeat was converted into a direct repeat (DR) …

X Chromosome Evolution In Cetartiodactyla, Anastasiya A. Proskuryakova, Anastasia I. Kulemzina, Polina L. Perelman, Alexey I. Makunin, Denis M. Larkin, Marta Farre, Anna V. Kukekova, Jennifer Lynn Johnson, Natalya A. Lemskaya, Violetta R. Beklemisheva, M. Roelke-Parker, June Bellizzi, Oliver A. Ryder, Stephen James O'Brien, Alexander S. Graphodatsky

Biology Faculty Articles

The phenomenon of a remarkable conservation of the X chromosome in eutherian mammals has been first described by Susumu Ohno in 1964. A notable exception is the cetartiodactyl X chromosome, which varies widely in morphology and G-banding pattern between species. It is hypothesized that this sex chromosome has undergone multiple rearrangements that changed the centromere position and the order of syntenic segments over the last 80 million years of Cetartiodactyla speciation. To investigate its evolution we have selected 26 evolutionarily conserved bacterial artificial chromosome (BAC) clones from the cattle CHORI-240 library evenly distributed along the cattle X chromosome. High-resolution BAC …

The Effects Of A Semi-Rigid Ankle Brace On A Simulated Isolated Subtalar Joint Instability, Julie Choisne, Matthew C. Hoch, Sebastian Bawab, Ian Alexander, Stacie I. Ringleb

Mechanical & Aerospace Engineering Faculty Publications

Subtalar joint instability is hypothesized to occur after injuries to the calcaneofibular ligament (CFL) in isolation or in combination with the cervical and the talocalcaneal interosseous ligaments. A common treatment for hindfoot instability is the application of an ankle brace. However, the ability of an ankle brace to promote subtalar joint stability is not well established. We assessed the kinematics of the subtalar joint, ankle, and hindfoot in the presence of isolated subtalar instability, investigated the effect of bracing in a CFL deficient foot and with a total rupture of the intrinsic ligaments, and evaluated how maximum inversion range of …

Atmospheric Tomography: A Bayesian Inversion Technique For Determining The Rate And Location Of Fugitive Emissions, Ruhi Humphries, Charles Jenkins, Ray Leuning, Steve Zegelin, David Griffith, Christopher Caldow, Henry Berko, Andrew Feitz

Faculty of Science - Papers (Archive)

A Bayesian inversion technique to determine the location and strength of trace gas emissions from a point source in open air is presented. It was tested using atmospheric measurements of N2O and CO2 released at known rates from a source located within an array of eight evenly spaced sampling points on a 20 m radius circle. The analysis requires knowledge of concentration enhancement downwind of the source and the normalized, three-dimensional distribution (shape) of concentration in the dispersion plume. The influence of varying background concentrations of ~1% for N2O and ~10% for CO2 was removed by subtracting upwind concentrations from …

Binocular Disparity Magnitude Affects Perceived Depth Magnitude Despite Inversion Of Depth Order, Harold Matthews, Harold Hill, Stephen Palmisano

Faculty of Health and Behavioural Sciences - Papers (Archive)

No abstract provided.

Effects Of Varying Amounts Of Pronation On The Mediolateral Ground Reaction Forces During Barefoot Versus Shod Running, Joanna B. Morley, Leslie M. Decker, Tracy Dierks, Daniel Blanke, Jeffrey French, Nikolaos Stergiou

Journal Articles

Despite extensive research on running mechanics, there is still a knowledge gap with respect to the degree of relationship between mediolateral ground reaction forces (ML-GRF) and foot pronation. Our goal was to investigate whether differences exist in ML-GRF among runners that exhibit different degrees of pronation. Seventeen male and 13 female recreational runners ran with and without shoes while ML-GRF and frontal kinematics were collected simultaneously. Subjects were divided into groups based upon their peak eversion (low pronation, middle pronation, high pronation). Discrete parameters from the ML-GRF were peak forces, respective times of occurrence, and impulses. No significant differences were …

Global Estimates Of Co Sources With High Resolution By Adjoint Inversion Of Multiple Satellite Datasets (Mopitt, Airs, Sciamachy, Tes), M Kopacz, D J. Jacob, J A. Fisher, J A. Logan, L Zhang, I A. Megretskaia, R M. Yantosca, K Singh, D K. Henze, J P. Burrows, M Buchwitz, I Khlystova, W. W Mcmillan, J C. Gille, D P. Edwards, A Eldering, V Thouret, P Nedelec

Faculty of Science - Papers (Archive)

We combine CO column measurements from the MOPITT, AIRS, SCIAMACHY, and TES satellite instruments in a full-year (May 2004–April 2005) global inversion of CO sources at 4◦ ×5◦ spatial resolution and monthly temporal resolution. The inversion uses the GEOS-Chem chemical transport model (CTM) and its adjoint applied to MOPITT, AIRS, and SCIAMACHY. Observations from TES, surface sites (NOAA/GMD), and aircraft (MOZAIC) are used for evaluation of the a posteriori solution. Using GEOSChem as a common intercomparison platform shows global consistency between the different satellite datasets and with the in situ data. Differences can be largely explained by different averaging kernels …

Crop Updates 2009 - Farming Systems, Derk Bakker, Grey Poulish, Steve Lacy, Svetlana Micic, Peter Mangano, Tony Dore, Alan Lord, Vivien Vanstone, Helen Hunter, Sean Kelly, W. K. Anderson, Gary Lang, David Mccarthy, Ruhi Ferdowsian, Ian Rose, Andrew Van Burgel, David Ferris, Rob Grima, Natalie Hogg, John Davis, Jarrad Martin, Pippa Michael, Robert Belford, Kawsar P. Salam, Roy Murray-Prior, David Bowran, Moin U. Salam, Tim Scanlon, Len Wade, Megan Ryan, Megan Abrahams, Chad Reynolds, Caroline Peek, Dennis Van Gool, Kari-Lee Falconer, Daniel Gardiner, Geoff Anderson, Siva Sivapalan, Tim Mcclelland, James Hunt, Zvi Hochman, Bill Long, Dean Holzworth, Anthony Whitbread, Stephen Van Rees, Peter Devoil, Yvette Oliver, Michael Robertson, Peter Stone

Crop Updates

This session covers nineteen papers from different authors:

Decision support technology

1. The use of high resolution imagery in broad acre cropping, Derk Bakker and Grey Poulish, Department of Agriculture and Food

2. Spraywise decisions – online spray applicatiors planning tool, Steve Lacy, Nufarm Australia Ltd

3. Testing for redlegged earthmite resistance in Western Australia, Svetlana Micic, Peter Mangano, Tony Dore and Alan Lord, Department of Agriculture and Food

4. Screening cereal, canola and pasture cultivars for Root Lesion Nematode (Pratylenchus neglectus), Vivien Vanstone, Helen Hunter and Sean Kelly,Department of Agriculture and Food

Farming Systems Research

5. …

Distance-Based Genome Rearrangement Phylogeny, Li-San Wang, Tandy Warnow, Bernard M.E. Moret, Robert K. Jansen, Linda A. Raubeson

All Faculty Scholarship for the College of the Sciences

Evolution operates on whole genomes through direct rearrangements of genes, such as inversions, transpositions, and inverted transpositions, as well as through operations, such as duplications, losses, and transfers, that also affect the gene content of the genomes. Because these events are rare relative to nucleotide substitutions, gene order data offer the possibility of resolving ancient branches in the tree of life; the combination of gene order data with sequence data also has the potential to provide more robust phylogenetic reconstructions, since each can elucidate evolution at different time scales. Distance corrections greatly improve the accuracy of phylogeny reconstructions from DNA …

Hydrogeological Characterization Of The South Oyster Bacterial Transport Site Using Geophysical Data, Susan S. Hubbard, Jinsong Chen, John Peterson, Ernest L. Majer, Kenneth H. Williams, Donald J. Swift, Brian Mailloux, Yoram Rubin

OES Faculty Publications

A multidisciplinary research team has conducted a field-scale bacterial transport study within an uncontaminated sandy Pleistocene aquifer near Oyster, Virginia. The overall goal of the project was to evaluate the importance of heterogeneities in controlling the field-scale transport of bacteria that are injected into the ground for remediation purposes. Geochemical, hydrological, geological, and geophysical data were collected to characterize the site prior to conducting chemical and bacterial injection experiments. In this paper we focus on results of a hydrogeological characterization effort using geophysical data collected across a range of spatial scales. The geophysical data employed include surface ground-penetrating radar, radar …