Life Sciences Commons^™

A Global Agenda For Advancing Freshwater Biodiversity Research, Alain Maasri, Sonja C. Jähnig, Hendrik Freitag, 93 Co-Authors

Biology Faculty Publications

Global freshwater biodiversity is declining dramatically, and meeting the challenges of this crisis requires bold goals and the mobilisation of substantial resources. While the reasons are varied, investments in both research and conservation of freshwater biodiversity lag far behind those in the terrestrial and marine realms. Inspired by a global consultation, we identify 15 pressing priority needs, grouped into five research areas, in an effort to support informed stewardship of freshwater biodiversity. The proposed agenda aims to advance freshwater biodiversity research globally as a critical step in improving coordinated actions towards its sustainable management and conservation.

Panoramic Spatial Vision In The Bay Scallop Argopecten Irradians, Daniel R. Chappell, Tyler M. Horan, Daniel Isaac Speiser

Faculty Publications

We have a growing understanding of the light-sensing organs and light-influenced behaviours of animals with distributed visual systems, but we have yet to learn how these animals convert visual input into behavioural output. It has been suggested they consolidate visual information early in their sensory-motor pathways, resulting in them being able to detect visual cues (spatial resolution) without being able to locate them (spatial vision). To explore how an animal with dozens of eyes processes visual information, we analysed the responses of the bay scallop Argopecten irradians to both static and rotating visual stimuli. We found A. irradians distinguish between …

Drivers Of Extracellular Polysaccharide Production By A Mat-Forming Diatom, Kaitlin A. Stansbury

FIU Electronic Theses and Dissertations

Microbial biofilms are held together by extracellular polymeric substances (EPS), which can be secreted by many organisms. EPS production can facilitate intercellular communication and inter-guild microbial mutualisms, intraspecific gamete exchange, nutrient sequestration, and desiccation resistance. Benthic microbial mats (periphyton) of the Florida Everglades and other karstic wetlands contain abundant EPS generated by mat-producing filamentous blue-green algae and many other species of mat-dwelling algae, cyanobacteria, and bacteria, including the most abundant Everglades diatom, Mastagloia calcarea. The benthic diatom genus Mastogloia is characterized by several morphological and physiological features that foster production of a ‘halo’ of EPS around the frustule, but the …

Spotted Salamander Egg Masses Exhibit A Unique Internal Microbiome In Relation To Their Environment, Elizabeth Leonard

Senior Honors Theses

Microbial studies have led to various ecological and medicinal discoveries. Amphibian eggs, like those of Ambystoma maculatum, exhibit natural resistance to bacterial invasion that may be microbiome related. The purpose of this research was to sequence the external and internal microbiome of A. maculatum egg masses and compare with the environmental microbiome. It was hypothesized that the external and internal microbiome would bear more similarity to each other than the water. A significant difference was observed between the microbiome of the inside surface of the egg mass and the water but not the outside surface of the egg and …

Desktop Scanning Electron Microscopy In Plant-Insect Interactions Research: A Fast And Effective Way To Capture Electron Micrographs With Minimal Sample Preparation, Sakshi Watts, Ishveen Kaur, Sukhman Singh, Bianca Jimenez, Jesus Chavana, Rupesh R. Kariyat

Biology Faculty Publications and Presentations

The ability to visualize cell and tissue morphology at a high magnification using scanning electron microscopy (SEM) has revolutionized plant sciences research. In plant-insect interactions studies, SEM based imaging has been of immense assistance to understand plant surface morphology including trichomes (plant hairs; physical defense structures against herbivores (Kaur and Kariyat, 2020a, 2020b; Watts and Kariyat, 2021), spines, waxes, and insect morphological characteristics such as mouth parts, antennae, and legs, that they interact with. While SEM provides finer details of samples, and the imaging process is simpler now with advanced image acquisition and processing, sample preparation methodology has lagged. The …

Temperature Stress And Disease Drives The Extirpation Of The Threatened Pillar Coral, Dendrogyra Cylindrus, In Southeast Florida, Nicholas P. Jones, Lystina Kabay, Kathleen Semon Lunz, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Rare species population dynamics can elucidate the resilience of an ecosystem. On coral reefs, climate change and local anthropogenic stressors are threatening stony coral persistence, increasing the need to assess vulnerable species locally. Here, we monitored the threatened pillar coral, Dendrogyra cylindrus, population in southeast Florida, USA, in relation to consecutive heat stress events in 2014 and 2015. In the fall of each year, D. cylindrus colonies bleached following intense thermal stress and by June 2020 all monitored colonies died from a white-syndrome type disease. This resulted in the ecological extinction of D. cylindrus in the Southeast Florida Coral …

How Weeds Affect Insects In Mango Cultivation Of South Florida, Blaire Kleiman

FIU Electronic Theses and Dissertations

The use of weeds as insectary plants is an emerging management tactic by agroecologists and entomologists to sustain beneficial insect species. Fallow lands have always been used by insects and are an important part of their diet in fragmented ecosystems. Weeds provide floral resources to beneficial insects such as pollinators, parasitoids, and predators and resources to keep them within a field in between crop flowering. Using weeds as a tool in tropical fruit production reliant on pollination like Mango (Mangifera indica) allows farmers to reduce herbicide use, increases the biodiversity of both plants and insects, and increases pollination of crops …

Agricultural Conservation Practices And Aquatic Ecological Responses, Richard E. Lizotte, Peter C. Smiley, Robert B. Gillespie, Scott S. Knight

Faculty and Student Publications

Conservation agriculture practices (CAs) have been internationally promoted and used for decades to enhance soil health and mitigate soil loss. An additional benefit of CAs has been mitigation of agricultural runoff impacts on aquatic ecosystems. Countries across the globe have agricultural agencies that provide programs for farmers to implement a variety of CAs. Increasingly there is a need to demonstrate that CAs can provide ecological improvements in aquatic ecosystems. Growing global concerns of lost habitat, biodiversity, and ecosystem services, increased eutrophication and associated harmful algal blooms are expected to intensify with increasing global populations and changing climate. We conducted a …

Contaminated Mycoscapes: Designing With Living Organisms, Maria Gutierrez, Elise Zilius

Architecture Senior Theses

The Anthropocene has stripped the planet of its resources, leaving behind an abundance of contamination. The built environment no longer meets the standards set by our turbulent planet. Humankind has lost the privilege of agency in design and construction. Construction methods have failed to evolve concurrently to the intense accumulation of waste; remaining firmly rooted in the materiality of the past, they have upheld architectural notions of stagnancy, cleanliness, and hygiene and ignore the rapidly changing conditions of the environment. This investigation uses contamination to fuel mycelial growth and construct emergent forms whilst executing remediation strategies for polluted sites of …

Invasion Ecology And Response To Fire Of The Nonnative Fern Lygodium Microphyllum In The South Florida Everglades, Nicole Sebesta

FIU Electronic Theses and Dissertations

Lygodium microphyllum (Old World Climbing Fern (OWCF)) is a climbing fern native to tropical and subtropical regions of Australia, Asia, and Africa. First introduced to Florida as an ornamental in the 1960s, the fern has become a serious invasive in numerous Florida habitats, severely degrading native herbaceous and woody vegetation and altering fire behavior. One area with the greatest increase in OWCF cover is the sawgrass marsh of southern Everglades National Park (ENP), where prescribed fire is used for both maintenance of sawgrass marshes and management of OWCF infestations. However, the efficacy of OWCF control using fire in this habitat …

Seasonal Plumage Condition Variation And The Thermal Value Of The Feather Coats Of House Sparrows (Passer Domesticus), Jordana Mf Graveley, Margaret Rubega, Kevin R. Burgio

Honors Scholar Theses

Feathers are critical to how birds thermoregulate, and thus their total energy balance. The feather coat insulates birds by trapping air next to the skin and acting as a physical barrier to heat loss. Despite previous work studying thermal balance in birds, relatively few studies have focused on the thermal contribution of the feather coat alone; most studies have focused on physiological and behavioral responses. Moreover, to our knowledge, no studies have directly measured the effect of feather wear through the annual cycle on the thermal performance of the feather coat. To address this, we used a thermal camera to …

Subterranean Movement Inferred By Temporary Emigration In Barton Springs Salamanders (Eurycea Sosorum), Nathan F. Bendik​, Dee Ann Chamberlain, Thomas J. Devitt, Sarah E. Donelson, Bradley Nissen, Jacob D. Owen, Donelle Robinson, Blake N. Sissel, Kenneth Sparks

Agricultural and Environmental Sciences Student Research

Movement behavior is an important aspect of animal ecology but is challenging to study in species that are unobservable for some portion of their lives, such as those inhabiting subterranean environments. Using four years of robust-design capture-recapture data, we examined the probability of movement into subterranean habitat by a population of endangered Barton Springs salamanders (Eurycea sosorum), a species that inhabits both surface and subterranean groundwater habitats. We tested the effects of environmental variables and body size on survival and temporary emigration, using the latter as a measure of subterranean habitat use. Based on 2,046 observations of 1,578 individuals, we …

Microhabitats In An Urban Greenspace: Function In The Beauty, Kalie Schultz

Honors Projects

This project combines science with art, with a focus on microhabitats in a unique natural space in an urban area. It is set in the Highlands Nature Preserve and the mediums used are photography and digital illustration. The goal of the project is to bring the viewer in from a wide, landscape perspective into a more close and detailed perspective of the multiple microhabitats that exist in the nature preserve. It shows how beauty can be hiding in plain sight for anyone to see if they look close enough. It also aims to show how the beauty is not just …

Synopsis Of The Tribe Platynini In New Zealand (Coleoptera: Carabidae), André Larochelle, Marie-Claude Larivière

Insecta Mundi

The tribe Platynini (Coleoptera: Carabidae: Harpalinae) is revised for New Zealand. Eight genera and forty-three species are recognized.

Four genera and sixteen species are described as new: Ctenognathus davidsoni Larochelle and Larivière new species, Ctenognathus earlyi Larochelle and Larivière new species, Ctenognathus garnerae Larochelle and Larivière new species, Ctenognathus hoarei Larochelle and Larivière new species, Ctenognathus kaikoura Larochelle and Larivière new species, Ctenognathus marieclaudiae Larochelle new species, Ctenog­nathus perumalae Larochelle and Larivière new species, Ctenognathus takahe Larochelle and Larivière new species, Ctenognathus tawanui Larochelle and Larivière new species, Ctenognathus tepaki Larochelle …

Local Adaptation To Continuous Mowing Makes The Noxious Weed Solanum Elaeagnifolium A Superweed Candidate By Improving Fitness And Defense Traits, Jesus Chavana, Sukhman Singh, Alejandro Vazquez, Bradley O. Christoffersen, Alexis Racelis, Rupesh R. Kariyat

Biology Faculty Publications and Presentations

The role of disturbance in accelerating weed growth is well understood. While most studies have focused on soil mediated disturbance, mowing can also impact weed traits. Using silverleaf nightshade (Solanum elaeagnifolium), a noxious and invasive weed, through a series of field, laboratory, and greenhouse experiments, we asked whether continuous mowing influences growth and plant defense traits, expressed via different avenues, and whether they cascade into offspring. We found that mowed plants produced significantly less number of fruits, and less number of total seeds per plant, but had higher seed mass, and germinated more and faster. When three herbivores …

First Description Of Deep Benthic Habitats And Communities Of Oceanic Islands And Seamounts Of The Nazca Desventuradas Marine Park, Chile, Jan M. Tapia-Guerra, Ariadna Mecho, Erin E. Easton, María De Los Ángeles Gallardo, Matthias Gorny, Javier Sellanes

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Seamounts and oceanic islands of the Chilean Exclusive Economic Zone at the intersection of the Nazca and Salas y Gómez ridges lie within one of the least explored areas in the world. The sparse information available, mainly for seamounts outside Chilean jurisdiction and shallow-water fauna of the Desventuradas Islands, suggests that the area is a hotspot of endemism. This apparent uniqueness of the fauna motivated the creation of the large Nazca-Desventuradas Marine Park (NDMP, ~ 300,000 km2) around the small islands San Felix and San Ambrosio in 2015. We report for the first time a detailed description of benthic microhabitats …

Editorial: Deep Pelagic Ecosystem Dynamics In A Highly Impacted Water Column: The Gulf Of Mexico After Deepwater Horizon, Tracey Sutton, Kevin M. Boswell, Heather Bracken-Grissom, Jose V. Lopez, Michael Vecchione, Marsh Youngbluth

Marine & Environmental Sciences Faculty Articles

The intermediate-sized midwater fauna (fishes, shrimps, and cephalopods; “micronekton” collectively) are dominant components of the pelagic ocean, which is by far the largest ecosystem type on Earth by several metrics (volume, organismal numbers, biomass, and productivity). Deep-pelagic micronekton, those animals residing in the water column below 200 m depth during the day, are the direct link between plankton and oceanic top predators, and through the linked processes of feeding and daily vertical migration facilitate one of Earth's most important ecosystem services to humans, carbon sequestration. Despite increasing recognition of this importance, a disconnect exists between stewardship and human impact; only …

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species, Rachael Storo, Cole Easson, Mahmood S. Shivji, Jose V. Lopez

Biology Faculty Articles

Profiles of symbiotic microbial communities (“microbiomes”) can provide insight into the natural history and ecology of their hosts. Using high throughput DNA sequencing of the 16S rRNA V4 region, microbiomes of five shark species in South Florida (nurse, lemon, sandbar, Caribbean reef, and tiger) have been characterized for the first time. The microbiomes show species specific microbiome composition, distinct from surrounding seawater. Shark anatomical location (gills, teeth, skin, cloaca) affected the diversity of microbiomes. An in-depth analysis of teeth communities revealed species specific microbial communities. For example, the genus Haemophilus, explained 7.0% of the differences of the teeth microbiomes …

Pinyon-Juniper Ecology And Management, Gabrielle Harden, Darren Mcavoy

All Current Publications

This fact sheet describes pinyon-juniper ecology, expansion, and management.

Molecular Characterization Of A Marine Turtle Tumor Epizootic, Profiling External, Internal And Postsurgical Regrowth Tumors, Kelsey Yetsko, Jessica A. Farrell, Nicholas B. Blackburn, Liam Whitmore, Maximilian R. Stammnitz, Jenny Whilde, Catherine B. Eastman, Devon Rollinson Ramia, Ana C. Leandro

School of Medicine Publications and Presentations

Sea turtle populations are under threat from an epizootic tumor disease (animal epidemic) known as fibropapillomatosis. Fibropapillomatosis continues to spread geographically, with prevalence of the disease also growing at many longer-affected sites globally. However, we do not yet understand the precise environmental, mutational and viral events driving fibropapillomatosis tumor formation and progression.

Here we perform transcriptomic and immunohistochemical profiling of five fibropapillomatosis tumor types: external new, established and postsurgical regrowth tumors, and internal lung and kidney tumors. We reveal that internal tumors are molecularly distinct from the more common external tumors. However, they have a small number of conserved potentially …

Thermal Acclimation Of Tropical Coral Reef Fishes To Global Heat Waves, Jacob L. Johansen, Lauren E. Nadler, Adam Habary, Alyssa J. Bowden, Jodie Rummer

Marine & Environmental Sciences Faculty Articles

As climate-driven heat waves become more frequent and intense, there is increasing urgency to understand how thermally sensitive species are responding. Acute heating events lasting days to months may elicit acclimation responses to improve performance and survival. However, the coordination of acclimation responses remains largely unknown for most stenothermal species. We documented the chronology of 18 metabolic and cardiorespiratory changes that occur in the gills, blood, spleen, and muscles when tropical coral reef fishes are thermally stressed (+3.0°C above ambient). Using representative coral reef fishes (Caesio cuning and Cheilodipterus quinquelineatus) separated by >100 million years of evolution and …

Abundance, Distribution, And Growth Characteristics Of Three Keystone Vachellia Trees In Gebel Elba National Park, South-Eastern Egypt, Ahmed M. Abbas, Mohammed Al-Kahtani, Stephen J. Novak, Wagdi Saber Soliman

Biology Faculty Publications and Presentations

This study was conducted to evaluate the abundance and distribution pattern of three keystone Vachellia taxa in wadi Khoda and wadi Rahaba, Gebel Elba National Park, a protected area in south-eastern Egypt. These taxa included Vachellia tortilis subsp. tortilis, Vachellia tortilis subsp. raddiana, and Vachellia ehrenbergiana. In wadi Khoda, only two of these taxa were detected (V. tortilis subsp. raddiana and V. tortilis subsp. tortilis), while all three taxa were encountered in wadi Rahaba. The density of trees in wadi Khoda was 34.3 plant ha⁻¹ compared to 26.3 plant ha⁻¹ in …

Cystic Fibrosis: An Ecological Review, Christopher Bozer

Student Works

This article focuses on the mechanisms of cystic fibrosis and the resulting microbial dysbiosis created through this disease. Through mutations in the CFTR gene, chloride ion proteins become dysfunctional, and mucus secreted in the lungs become thick and heavy, allowing infectious and pathogenic bacteria to thrive. 16s rRNA has been the primary method of sequencing the lung microbiome. Researchers have relied on bronchoscopies to collect proper samples. It can be concluded through current research that chloride ion dysfunction allows for an abnormal lung environment to develop. This abnormal environment allows for chronic infection of the lungs, and the formation of …

Soricidenfunde (Mammalia: Insectivora) In Der Mongolei, Michael Stubbe, Davaa Lchagvasuren, Hermann Ansorge, Ravčigijn Samjaa, Dietrich Dolch, Nayamsuren Batsajchan, Margit Hanelt, Annegret Stubbe

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

New data on the Mongolian fauna of Soricidae came in the last decades from Russian scientists, such as Ju. G. Švecov, N. I. Litvinov, and B. I. Sheftel, last not least, in cooperation with Mongolian mammalogists. We remind the reader about the publications of N. Chotochu, D. Bazardorž, and R. Samjaa with his team. Also in future, there is a lot to do for understanding the biology, ecology, and distribution of the Mongolian shrews. We have summarized the most important publications on shrews and made a grid mapping together with the results of the Mongolian-German Biological Expeditions. Up to now, …

Beitrag Zur Säugetierfauna Der Ostmongolei, Davaa Lchagvasuren, Annegret Stubbe, Michael Stubbe, Hermann Ansorge, Dietrich Dolch

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Between 2008 and 2014, four Mongolian-German Biological Expeditions worked for short periods in East Mongolia. The results related to mammalian fauna were summarized. Investigation areas were parts of the Daurian steppe, Buir-nuur- and Nömrög-gol-region. Chiroptera were recorded with four species. Especially, Vespertilio sinensis has to be considered as a characteristic species of the eastern steppes. Aggregations of some thousand individuals were found in the Buir-nuur-region. The other three species were Plecotus ognevi, Myotis petax, and Myotis aurascens. It is to expect, that in eastern Mongolia some more Chiroptera-species will re-covered in future.

The degree of investigation of …

Hypsugo Stubbei Sp. Nov., A Novel Cryptic Bat Species Of The Genus Hypsugo (Vespertilionidae, Chiroptera, Mammalia) From Mongolia, Dietrich Dolch, Nyamsuren Batsaikhan, Annegret Stubbe, Dirk Steinhauser

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

The occurrence of two members of the genus Hypsugo, namely H. alaschanicus and H. savii caucasicus, have been reported for Mongolia in the literature. Due to various taxonomic reassignments within and between genera, the number of records for the genus Hypsugo in Mongolia is quite scarce and sometimes not resolved at species or subspecies level. Despite recognition of the two above-mentioned species, recent reports based on genetic analyses describe only new and further records of H. alaschanicus. Thus, it exists a large uncertainty regarding the occurrence and distribution of H. savii caucasicus in Mongolia. Here, our efforts …

Lifetime Reproductive Benefits Of Cooperative Polygamy Vary For Males And Females In The Acorn Woodpecker (Melanerpes Formicivorus), Sahas Barve, Christina Riehl, Eric L. Walters, Joseph Haydock, Hannah L. Dugdale, Walter D. Koenig

Biological Sciences Faculty Publications

Cooperative breeding strategies lead to short-term direct fitness losses when individuals forfeit or share reproduction. The direct fitness benefits of cooperative strategies are often delayed and difficult to quantify, requiring data on lifetime reproduction. Here, we use a longitudinal dataset to examine the lifetime reproductive success of cooperative polygamy in acorn woodpeckers (Melanerpes formicivorus), which nest as lone pairs or share reproduction with same-sex cobreeders. We found that males and females produced fewer young per successful nesting attempt when sharing reproduction. However, males nesting in duos and trios had longer reproductive lifespans, more lifetime nesting attempts and higher …

Soil Macroinvertebrate Responses To Wildfires In The Blue Ridge Mountains, Usa, Madeline Nicole Olliff, Bruce Snyder, Mac Callaham Jr., Melanie K. Taylor

Graduate Research Showcase

Title: Soil Macroinvertebrate Responses to Wildfires in the Blue Ridge Mountains, USA Authors: 1Madeline N. Olliff, 1Bruce A. Snyder, 2Melanie K. Taylor, and 2Mac A. Callaham

1Georgia College and State University, Milledgeville, Georgia, USA; 2USDA Forest Service, Southern Research Station, Athens, Georgia, USA

Abstract: Wildfires are of increasing concern in light of climate change, more frequent late summer droughts, and increasing incidence of human ignitions. There have been few studies examining the effects of wildland fires on soil macroinvertebrates in the Blue Ridge Mountains, in spite of the importance of these animals to soil processes, and their contributions to the …

Scoping Review Of Distribution Models For Selected Amblyomma Ticks And Rickettsial Group Pathogens, Catherine A. Lippi, Holly D. Gaff, Alexis L. White, Sadie J. Ryan

Biological Sciences Faculty Publications

The rising prevalence of tick-borne diseases in humans in recent decades has called attention to the need for more information on geographic risk for public health planning. Species distribution models (SDMs) are an increasingly utilized method of constructing potential geographic ranges. There are many knowledge gaps in our understanding of risk of exposure to tick-borne pathogens, particularly for those in the rickettsial group. Here, we conducted a systematic scoping review of the SDM literature for rickettsial pathogens and tick vectors in the genus Amblyomma. Of the 174 reviewed articles, only 24 studies used SDMs to estimate the potential extent …