Life Sciences Commons^™

Predicting Effects Of Climate Change On Productivity And Persistence Of Forest Trees, Russell D. Kramer, H. Roaki Ishii, Kelsey R. Carter, Yuko Miyazaki, Molly A. Cavaleri, Masatake G. Araki, Wakana A. Azuma, Yuta Inoue, Chinatsu Hara

Michigan Tech Publications

Global climate change increases uncertainty in sustained functioning of forest ecosystems. Forest canopies are a key link between terrestrial ecosystems, the atmosphere, and climate. Here, we introduce research presented at the 66th meeting of the Ecological Society of Japan in the symposium “Structure and function of forest canopies under climate change.” Old-growth forest carbon stores are the largest and may be the most vulnerable to climate change as the balance between sequestration and emission could easily be tipped. Detailed structural analysis of individual large, old trees shows they are allocating wood to the trunk and crown in patterns that cannot …

Taxonomic Similarity Does Not Predict Necessary Sample Size For Ex Situ Conservation: A Comparison Among Five Genera, Sean Hoban, Taylor Callicrate, John Clark, Susan Deans, Michael Dosmann, Priyanka Dipak Kadav, Et Al.

Michigan Tech Publications

Effectively conserving biodiversity with limited resources requires scientifically informed and efficient strategies. Guidance is particularly needed on how many living plants are necessary to conserve a threshold level of genetic diversity in ex situ collections. We investigated this question for 11 taxa across five genera. In this first study analysing and optimizing ex situ genetic diversity across multiple genera, we found that the percentage of extant genetic diversity currently conserved varies among taxa from 40% to 95%. Most taxa are well below genetic conservation targets. Resampling datasets showed that ideal collection sizes vary widely even within a genus: one taxon …

The Making Of Transgenic, Mujeeb Olushola Shittu, Tessa Steenwinkel, Shigeyuki Koshikawa, Thomas Werner

Michigan Tech Publications

The complex color patterns on the wings and body of Drosophila guttifera (D. guttifera) are emerging as model systems for studying evolutionary and developmental processes. Studies regarding these processes depend on overexpression and downregulation of developmental genes, which ultimately rely upon an effective transgenic system. Methods describing transgenesis in Drosophila melanogaster (D. melanogaster) have been reported in several studies, but they cannot be applied to D. guttifera due to the low egg production rate and the delicacy of the eggs. In this protocol, we describe extensively a comprehensive method used for generating transgenic D. guttifera. Using the protocol described here, …

Conceptual Planning Of Urban–Rural Green Space From A Multidimensional Perspective: A Case Study Of Zhengzhou, China, Bo Mu, Chang Liu, Guohang Tian, Yaqiong Xu, Yali Zhang, Audrey L. Mayer, Et Al.

Michigan Tech Publications

The structure and function of green-space system is an eternal subject of landscape architecture, especially due to limited land and a need for the coordinated development of PLEs (production, living, and ecological spaces). To make planning more scientific, this paper explored green-space structure planning via multidimensional perspectives and methods using a case study of Zhengzhou. The paper applies theories (from landscape architecture and landscape ecology) and technologies (like remote sensing, GIS—geographic information system, graph theory, and aerography) from different disciplines to analyze current green-space structure and relevant physical factors to identify and exemplify different green-space planning strategies. Overall, our analysis …

Trends In Protected Area Representation Of Biodiversity And Ecosystem Services In Five Tropical Countries, Rachel A. Neugarten, Kevin Moull, Natalia Acero Martinez, Luciano Andriamaro, Curtis Bernard, Leonardo Saenz, Et Al.

Michigan Tech Publications

In late 2020, governments will set the next decade of conservation targets under the UN Convention on Biological Diversity. Setting new targets requires understanding how well national protected area (PA) networks are spatially representing important areas for biodiversity and ecosystem services. We analyzed the representation of biodiversity priority areas (BPAs), forests, forest carbon stocks, non-timber forest products (NTFPs), and freshwater ecosystem services (FES) within terrestrial PA systems in Cambodia, Guyana, Liberia, Madagascar, and Suriname in 2003 and 2017. Four of the countries (all except Suriname) expanded their terrestrial PA networks during the study period. In all five countries, we found …

Effects Of A Regenerating Matrix On The Survival Of Birds In Tropical Forest Fragments, Jared D. Wolfe, Philip C. Stouffer, Richard O. Bierregaard Jr., David A, Luther, Thomas E. Lovejoy

Michigan Tech Publications

Background

Vast areas of lowland neotropical forest have regenerated after initially being cleared for agricultural purposes. The ecological value of regenerating second growth to forest-dwelling birds may largely depend on the age of the forest, associated vegetative structure, and when it is capable of sustaining avian demographics similar to those found in pristine forest.

Methods

To determine the influence of second growth age on bird demography, we estimated the annual survival of six central Amazonian bird species residing in pristine forest, a single 100 and a single 10 ha forest fragment, taking into consideration age of the surrounding matrix (i.e. …

A Phylogenomic Approach Reveals A Low Somatic Mutation Rate In A Long-Lived Plant., Adam J Orr, Amanda Padovan, David Kainer, Carsten Kulheim, Lindell Bromham, Carlos Bustos-Segura, William Foley, Tonya Haff, Ji-Fan Hsieh, Alejandro Morales-Suarez, Reed A Cartwright, Robert Lanfear

Michigan Tech Publications

Somatic mutations can have important effects on the life history, ecology, and evolution of plants, but the rate at which they accumulate is poorly understood and difficult to measure directly. Here, we develop a method to measure somatic mutations in individual plants and use it to estimate the somatic mutation rate in a large, long-lived, phenotypically mosaic Eucalyptus melliodora tree. Despite being 100 times larger than Arabidopsis, this tree has a per-generation mutation rate only ten times greater, which suggests that this species may have evolved mechanisms to reduce the mutation rate per unit of growth. This adds to a …

Spatial Contrasts In Hepatic And Biliary Pahs In Tilefish (Lopholatilus Chamaeleonticeps) Throughout The Gulf Of Mexico, With Comparison To The Northwest Atlantic, Susan M. Snyder, Jill A. Olin, Erin L. Pulster, Steven A. Murawski

Michigan Tech Publications

A multinational demersal longline survey was conducted on the Gulf of Mexico continental shelf over the years 2015 and 2016 to generate a Gulf-wide baseline of polycyclic aromatic hydrocarbon (PAH) concentrations in demersal fishes. Tilefish (Lopholatilus chamaeleonticeps) were sampled in all regions of the Gulf of Mexico for biometrics, bile, and liver. Tilefish liver was also obtained from surveys in the northwest Atlantic Ocean for comparison. Liver tissues (n ¼ 305) were analyzed for PAHs and select alkylated homologs using QuEChERS extractions and gas chromatography tandem mass spectrometry. Bile samples (n ¼ 225) were analyzed for biliary PAH metabolites using …

Integrating Wildlife Conservation Into Ecosystem Service Payments And Carbon Offsets: A Case Study From Costa Rica, Jared D. Wolfe, Pablo Elizondo

Michigan Tech Publications

Wildlife conservation is challenged by the expensive and cost prohibitive strategy of directly purchasing land to protect habitat at the landscape scale. An alternative mechanism used to protect habitat includes payments for ecosystem‐services (PES), where farmers and landowners are paid to manage their lands for a particular ecological service. Some of these easements are used to conserve a diversity of resources (i.e., water, soil, nutrient cycling, and biodiversity); however, the largest PES easement programs focus on carbon sequestration and are sold on international carbon markets as offsets. Here, we demonstrate that successfully protecting vulnerable habitat for wildlife can be achieved …

Growing Biofuel Feedstocks In Copper-Contaminated Soils Of A Former Superfund Site, Virinder Sidhu, Dibyendu Sarkar, Rupali Datta

Michigan Tech Publications

Copper mining in the Upper Peninsula of Michigan in the mid-19th century generated millions of tons of mining waste, called stamp sand, which was deposited into various offshoots of Lake Superior. The toxic stamp sand converted the area into barren, fallow land. Without a vegetative cover, stamp sand has been eroding into the lakes, adversely affecting aquatic life. Our objective was to perform a greenhouse study, to grow cold-tolerant oilseed crops camelina (Camelina sativa) and field pennycress (Thlaspi arvense) on stamp sand, for the dual purpose of biofuel production and providing a vegetative cover, thereby decreasing erosion. Camelina and field …

Assessing The Ecosystem Services Of Various Types Of Urban Green Spaces Based On I-Tree Eco, Peihao Song, Gunwoo Kim, Audrey L. Mayer, Ruizhen He, Guohang Tian

Michigan Tech Publications

Urban green spaces play a crucial role in maintaining urban ecosystem sustainability by providing numerous ecosystem services. How to quantify and evaluate the ecological benefits and services of urban green spaces remains a hot topic currently, while the evaluation is barely applied or implemented in urban design and planning. In this study, super-high-resolution aerial images were used to acquire the spatial distribution of urban green spaces; a modified pre-stratified random sampling method was applied to obtain the vegetation information of the four types of urban green spaces in Luohe, a common plain city in China; and i-Tree Eco model was …

Effects Of Invasive Watermilfoil On Primary Production In Littoral Ones Of North-Temperate Lakes, Ryan R. Van Goethem, Casey Huckins, Amy Marcarelli

Michigan Tech Publications

Species invasions are changing aquatic ecosystems worldwide. Submerged aquatic macrophytes control lake ecosystem processes through their direct and indirect interactions with other primary producers, but how these interactions may be altered by macrophyte species invasions in temperate lakes is poorly understood. We addressed whether invasive watermilfoil (IWM) altered standing crops and gross primary production (GPP) of other littoral primary producers (macrophytes, phytoplankton, attached algae, and periphyton) in littoral zones of six Michigan lakes through a paired-plot comparison study of sites with IWM (standardized abundance 7–56%) compared to those with little or no IWM (standardized abundance 0–2%). We found that primary …

Biogeographic Patterns In Members Of Globally Distributed And Dominant Taxa Found In Port Microbial Communities., Ryan B Ghannam, Laura G. Schaerer, Timothy M. Butler, Stephen M Techtmann

Michigan Tech Publications

We conducted a global characterization of the microbial communities of shipping ports to serve as a novel system to investigate microbial biogeography. The community structures of port microbes from marine and freshwater habitats house relatively similar phyla, despite spanning large spatial scales. As part of this project, we collected 1,218 surface water samples from 604 locations across eight countries and three continents to catalogue a total of 20 shipping ports distributed across the East and West Coast of the United States, Europe, and Asia to represent the largest study of port-associated microbial communities to date. Here, we demonstrated the utility …

Genetic Variation Of Introduced Red Oak (Quercus Rubra) Stands In Germany Compared To North American Populations, Tim Pettenkofer, Reiner Finkeldey, Markus Müller, Konstantin V. Krutovsky, Barbara Vornam, Ludger Leinemann, Oliver Gailing

Michigan Tech Publications

Although Northern red oak (Quercus rubra L.) is the most important introduced deciduous tree species in Germany, only little is known about its genetic variation. For the frst time, we describe patterns of neutral and potentially adaptive nuclear genetic variation in Northern red oak stands across Germany. For this purpose, 792 trees were genotyped including 611 trees from 12 stands in Germany of unknown origin and 181 trees from four populations within the natural distribution area in North America. Our marker set included 12 potentially adaptive (expressed sequence tag-derived simple sequence repeat=EST SSR) and 8 putatively selectively neutral nuclear microsatellite …

What Is An Endangered Species?: Judgments About Acceptable Risk, Thomas Offer-Westort, Adam Feltz, Jeremy T. Bruskotter, John A. Vucetich

Michigan Tech Publications

Judgments about acceptable risk in the context of policy may be influenced by law makers, policy makers, experts and the general public. While significant effort has been made to understand public attitudes on acceptable risk of environmental pollution, little is known about such attitudes in the context of species' endangerment. We present survey results on these attitudes in the context of United States' legal-political apparatus intended to mitigate species endangerment. The results suggest that the general public exhibit lower tolerance for risk than policy makers and experts. Results also suggest that attitudes about acceptable risk for species endangerment are importantly …

Crispr/Cas9-Mediated Single And Biallelic Knockout Of Poplar Sterile Apetala (Popsap) Leads To Complete Reproductive Sterility, Abdul Azeez, Victor Busov

Michigan Tech Publications

No abstract provided.

‘Coronated’ Consumption In The Viral Market, Soonkwan Hong

Michigan Tech Publications

The universal exposure to the virus has disrupted institutions, redefined values, and reshaped systems, including the market. Idling, uncertainty, and liquidity encapsulate the ever-precarious individual lives and the reflexive socio-politico-cultural changes. These conditions and consequences nonetheless create paradoxical opportunities in the viral market. The new meaning of connectivity that promotes high-viscosity relationships and high-visibility identities will transform the market to better acknowledge and support humans and the new sociality.

Consciousness As A Factor In Evolution, Kenneth A. Augustyn

Michigan Tech Publications

What I call the mind began as a non-conscious robotic biochemical process control system in the very earliest forms of life. As life evolved, problems in control became more difficult and exceeded the computational capabilities of the organisms. Nature discovered a means of transcending computable physical processes resulting in non-computational subjective mental capabilities that, while still not conscious, had a degree of genuine autonomy from the physical world. These autonomous subjective wants and goals now affected the course of (but not the mechanism of) evolution. The integrated amalgam of robotic and transrobotic unconscious capabilities eventually gave rise to consciousness, which …

Special Issue On The Third Workshop On Biological Mentality, Kenneth A. Augustyn

Michigan Tech Publications

The Third Workshop on Biological Mentality was held from September 23, 2019 to March 2, 2020 as a series of twenty-one Monday online conferencing sessions, each consisting of a talk followed by a Q&A discussion. Like the two previous workshops [1, 2], the objective of this workshop was to seek a deeper level of understanding the physical foundations of biological mentality (whether conscious or nonconscious).

Copper-Rich “Halo” Off Lake Superior's Keweenaw Peninsula And How Mass Mill Tailings Dispersed Onto Tribal Lands, W. Charles Kerfoot, Noel Urban, Jaebong Jeong, Carol Maclennan, Sophia Ford

Michigan Tech Publications

Over a century ago, shoreline copper mills sluiced more than 64 million metric tonnes of tailings into Lake Superior, creating a “halo” around the Keweenaw Peninsula with a buried copper peak. Here we examine how tailings from one of the smaller mills (Mass Mill, 1902–1919) spread as a dual pulse across southern Keweenaw Bay and onto tribal L'Anse Indian Reservation lands. The fine (“slime clay”) fraction dispersed early and widely, whereas the coarse fraction (stamp sands) moved more slowly southward as a black sand beach deposit, leaving scattered residual patches. Beach stamp sands followed the path of sand eroding from …

Scientists’ Warning To Humanity: Rapid Degradation Of The World's Large Lakes, Jean Philippe Jenny, Orlane Anneville, Fabien Arnaud, Yoann Baulaz, Damien Bouffard, Isabelle Domaizon, Serghei A. Bocaniov, Nathalie Chèvre, Maria Dittrich, Jean Marcel Dorioz, Erin S. Dunlop, Gaël Dur, Jean Guillard, Thibault Guinaldo, Stéphan Jacquet, Aurélien Jamoneau, Zobia Jawed, Erik Jeppesen, Gail Krantzberg, John Lenters, Barbara Leoni, Michel Meybeck, Nava, Tiina Nõges, Peeter Nõges, Martina Patelli, Victoria Pebbles, Marie-Elodie Perga, Serena Rasconia, Carl R. Ruetz Iii, Lars Rudstam, Nico Salmaso, Sharma Sapna, Dietmar Straile, Olga Tammeorg, Michael R. Twiss, Donald G. Uzarski, Anne-Mari Ventelä, Warwick F. Vincent, Steven W. Wilhelm, Sten-Åke Wängberg, Gesa A. Weyhenmeyer

Michigan Tech Publications

Large lakes of the world are habitats for diverse species, including endemic taxa, and are valuable resources that provide humanity with many ecosystem services. They are also sentinels of global and local change, and recent studies in limnology and paleolimnology have demonstrated disturbing evidence of their collective degradation in terms of depletion of resources (water and food), rapid warming and loss of ice, destruction of habitats and ecosystems, loss of species, and accelerating pollution. Large lakes are particularly exposed to anthropogenic and climatic stressors. The Second Warning to Humanity provides a framework to assess the dangers now threatening the world's …

Alternate Trait‐Based Leaf Respiration Schemes Evaluated At Ecosystem‐Scale Through Carbon Optimization Modeling And Canopy Property Data, R. Q. Thomas, M. Williams, M. A. Cavaleri, J.‐F. Exbrayat, T. L. Smallman, L. E. Street

Michigan Tech Publications

Leaf maintenance respiration (R_leaf,m) is a major but poorly understood component of the terrestrial carbon cycle (C). Earth systems models (ESMs) use simple sub‐models relating R_leaf,m to leaf traits, applied at canopy scale. R_leaf,m models vary depending on which leaf N traits they incorporate (e.g., mass or area based) and the form of relationship (linear or nonlinear). To simulate vegetation responses to global change, some ESMs include ecological optimization to identify canopy structures that maximize net C accumulation. However, the implications for optimization of using alternate leaf‐scale empirical R_leaf,m models are undetermined. Here we combine …

Out Of The Ashes: Ecological Resilience To Extreme Wildfire, Prescribed Burns, And Indigenous Burning In Ecosystems, Christina Eisenberg, Christopher Anderson, Adam Collingwood, Robert Sissons, Christopher Dunn, Curtis Edson, Et Al.

Michigan Tech Publications

Until Euro-American colonization, Indigenous people used fire to modify eco-cultural systems, developing robust Traditional Ecological Knowledge (TEK). Since 1980, wildfire activity has increased due to fire suppression and climate change. In 2017, in Waterton Lakes National Park, AB, the Kenow wildfire burned 19,303 ha, exhibiting extreme fire behavior. It affected forests and the Eskerine Complex, a native-grass prairie treated with prescribed burns since 2006 to reduce aspen (Populus tremuloides) encroachment linked to fire suppression and bison (Bison bison bison) extirpation. One year post-fire, the Kenow wildfire caused vigorous aspen sprouting, altered stand structure to an early-seral …

Territorial Landscapes: Incorporating Density-Dependence Into Wolf Habitat Selection Studies., Shawn T O'Neil, Dean E Beyer, Joseph K Bump

Michigan Tech Publications

Habitat selection is a process that spans space, time and individual life histories. Ecological analyses of animal distributions and preferences are most accurate when they account for inherent dynamics of the habitat selection process. Strong territoriality can constrain perception of habitat availability by individual animals or groups attempting to colonize or establish new territory. Because habitat selection is a function of habitat availability, broad-scale changes in habitat availability or occupancy can drive density-dependent habitat functional responses. We investigated density-dependent habitat selection over a 19-year period of grey wolf (

A Current Update On Human Papillomavirus-Associated Head And Neck Cancers., Ebenezer Tumban

Michigan Tech Publications

Human papillomavirus (HPV) infection is the cause of a growing percentage of head and neck cancers (HNC); primarily, a subset of oral squamous cell carcinoma, oropharyngeal squamous cell carcinoma, and laryngeal squamous cell carcinoma. The majority of HPV-associated head and neck cancers (HPV + HNC) are caused by HPV16; additionally, co-factors such as smoking and immunosuppression contribute to the progression of HPV + HNC by interfering with tumor suppressor miRNA and impairing mediators of the immune system. This review summarizes current studies on HPV + HNC, ranging from potential modes of oral transmission of HPV (sexual, self-inoculation, vertical and horizontal …

The Composition And Height Of Saplings Capturing Silvicultural Gaps At Two Long-Term Experiments In Managed Northern Hardwood Forests, Sam Knapp, Christopher R. Webster, Christel C. Kern

Michigan Tech Publications

Managing forests for mixtures of canopy species promotes future resilience and mitigates risks of catastrophic resource loss. This study describes the compositions, heights, and locations within openings of gap-capturing saplings in two long-term group-selection experiments in managed northern hardwoods. We expected opening size to affect the composition of gap-capturing saplings and that composition would match advance regeneration where relatively large stems remained following harvest. We also expected sapling height to respond positively to opening size, but plateau in gap areas above 200 m², and legacy-tree retention to negatively affect sapling height. In two group-selection experiments, we found that …

Tooth Fracture Frequency In Gray Wolves Reflects Prey Availability., Blaire Van Valkenburgh, Rolf O. Peterson, Douglas W Smith, Daniel R Stahler, John A. Vucetich

Michigan Tech Publications

Exceptionally high rates of tooth fracture in large Pleistocene carnivorans imply intensified interspecific competition, given that tooth fracture rises with increased bone consumption, a behavior that likely occurs when prey are difficult to acquire. To assess the link between prey availability and dental attrition, we documented dental fracture rates over decades among three well-studied populations of extant gray wolves that differed in prey:predator ratio and levels of carcass utilization. When prey:predator ratios declined, kills were more fully consumed, and rates of tooth fracture more than doubled. This supports tooth fracture frequency as a relative measure of the difficulty of acquiring …

Development And Characterization Of An Antimicrobial Polydopamine Coating For Conservation Of Humpback Whales., Ariana Tyo, Sonja Welch, Maureen Hennenfent, Pegah Kord Fooroshani, Bruce P Lee, Rupak Rajachar

Michigan Tech Publications

Migration patterns of humpback whales have been monitored using 316L stainless steel (SS) satellite telemetry tags. The potential for tissue infection and necrosis is increased if the bacteria, naturally a part of the diverse microbiome on the skin of humpback whales, can adhere to and colonize the surface of the tags. Polydopamine (pDA) has the potential to prevent the adhesion of one of the most prevalent bacterial strains on the surface of the skin of cetaceans (

Deep Uncertainty, Public Reason, The Conservation Of Biodiversity And The Regulation Of Markets For Lion Skeletons, Peter Coals, Dawn Burnham, Paul Johnson, Andrew Loveridge, David Macdonald, Vivienne Williams, John A. Vucetich

Michigan Tech Publications

Public reason is a formal concept in political theory. There is a need to better understand how public reason might be elicited in making public decisions that involve deep uncertainty, which arises from pernicious and gross ignorance about how a system works, the boundaries of a system, and the relative value (or disvalue) of various possible outcomes. This article is the third in a series to demonstrate how ethical argument analysis—a qualitative decision-making aid—may be used to elicit public reason in the presence of deep uncertainty. The first article demonstrated how argument analysis is capable of probing deep into a …

Detecting Dynamic System Regime Boundaries With Fisher Information: The Case Of Ecosystems, Eva Konig, Heriberto Cabezas, Audrey L. Mayer

Michigan Tech Publications

The direct measurement of the resilience (resistance to disturbances) of an ecosystem’s current regime (or “alternative stable state”) remains a key concern for managing human impacts on these ecosystems and their risk of collapse. Approaches which utilize statistics or information theory have demonstrated utility in identifying regime boundaries. Here, we use Fisher information to establish the limits of the resilience of a dynamic regime of a predator–prey system. This is important because previous studies using Fisher information focused on detecting whether a regime change has occurred, whereas here we are interested in determining how much an ecological system can vary …