Life Sciences Commons^™

Consistency Is Key: Investigating Vocal Consistency In Field Sparrows, Stephanie Stanton

Masters Theses

No abstract provided.

Influence Of Soil And Land Cover On Chronic Wasting Disease Prevalence In White-Tailed Deer And Mule Deer Across North America, Madison L. Miller

Masters Theses

Chronic wasting disease (CWD) is a fatal neurodegenerative disease that infects deer and is caused by a pathogenic prion. CWD is a concerning wildlife disease because it is incurable, potentially poses a risk to human health, and is spreading rapidly. CWD prions are transmitted both directly via bodily fluids and indirectly through environmental reservoirs such as soil. In this study, we investigated the influence of land cover and soil characteristics on CWD prevalence in white-tailed deer and mule deer. We acquired CWD prevalence data from seven North American regions and used ArcGIS to obtain land cover and soil characteristic data …

Changes In Gene Expression Profiles In Müller Glia Following Exposure To An Α7 Nicotinic Acetylcholine Receptor Agonist, Megan L. Stanchfield

Masters Theses

Previous studies from this lab have determined that dedifferentiation of Müller glia (MG) occurs after application of an α7 nicotinic acetylcholine receptor agonist, PNU-282987 (PNU), to retinal pigment epithelial (RPE) cells in adult rodents. This study was designed to explore the role of the HB-EGF/Ascl1/Lin28a signaling pathway in MG dedifferentiation to retinal progenitor cells. RNAseq was performed on MG following contact with RPE-J cells treated with PNU-282987. Up- or down-regulated genes were compared with published literature of MG dedifferentiation that occurs in lower vertebrate regeneration or with transcript profiles during early mammalian development. Between 8-12 hours, up-regulation was observed in …

Pcr Analysis On The Effects Of Alpha Synuclein Treatment On C6 Rat Glioma Cells, Michael John Helmus

Masters Theses

Multiple System Atrophy (MSA) is a rare neurological disease that mainly implicates the neuronal protein, alpha synuclein, as being centrally involved in MSA pathology. Despite synucleinopathy dogma, little is known about alpha synucleins role in MSA pathogenesis. The Ide laboratory previously conducted an Affymetrix gene expression study utilizing the post-mortem pons tissue from eight individuals with MSA and five individuals without any known neurological disorders. One conclusion from that study was that downregulation of numerous mitochondrial homeostasis related genes had occurred. It is hypothesized that alpha synuclein can perturb mitochondrial homeostasis through direct interaction with mitochondria. This study utilized Reverse …

Astrogliosis In The Adult Zebrafish Olfactory Bulb During Repetitive Peripheral Damage, Jackson Scheib

Masters Theses

Traumatic brain injuries (TBIs), particularly if repetitive, cause massive disruptions of brain homeostasis, significant loss of neurons, and may result in death. Astrocytes are a type of cell that maintain brain homeostasis and neuronal health. Astrogliosis is a continuum of morphological and functional changes of astrocytes in response to damage. This can be neuroprotective or neurotoxic depending on the severity and type of injury. Global astrocyte scarring is typical of neurotoxic astrogliosis and is the source of secondary injury after TBIs. The adult zebrafish olfactory system is known for its capacity to recover from trauma, however, astrocytes in this system …

The Role Of Calcium In Regulation Of Glial Cell Line Derived Neurotrophic Factor By Skeletal Muscle Cells, Alicia M. Boynton

Masters Theses

Glial cell line-derived neurotrophic factor (GDNF) is an important signaling molecule for the somatic motor nervous system. GDNF protein is produced and secreted by skeletal muscle cells and helps maintain motor neuron innervation at the neuromuscular junction. Treatment with exogenous GDNF prevents denervation which is characteristic of aging and neurodegenerative disease. The therapeutic potential of GDNF cannot be fully explored without understanding the mechanisms by which GDNF protein production is regulated. The primary objective of this study was to determine the role of calcium in regulating GDNF protein expression by skeletal muscle cells. Skeletal muscle cells (C2C12) were grown in …

Physiology And Genetics Shape The Microbiome Of A Seabird Species (Oceanodroma Leucorhoa) More Than Environmental And Social Factors, Douglas Steven Pearce

Masters Theses

The microbiome provides multiple benefits to animal hosts that can profoundly impact health and behavior. Microbiomes are well-characterized in humans and animals in controlled settings, yet assessments of wild bird microbial communities remain vastly understudied. This study examines the multiple factors that affect the microbiome of a burrow-nesting Procellariiform bird species, Leach’s storm-petrel. 16S rRNA-based Illumina Mi-Seq analyses are used to assess the composition and structure of bird and burrow-associated bacterial communities. Results indicate that sex and skin site contribute to bird-associated bacterial community variation, and MHC heterozygosity impacts these bacterial assemblages in a sex and site-specific manner, potentially having …

Expression Of Insulin Responsive Genes In Insulin Resistant Conditions, And The Effect Of Selenium On Gene Expression, David L. Ruff

Masters Theses

Chronically high blood glucose levels lead to many problems, such as insulin resistance, the hallmark of Type II diabetes. Increased flux through the hexosamine biosynthesis pathway is one mechanism by which high glucose as well as glucosamine has been shown to induce insulin resistance. This study tests the effects of glucosamine induced insulin resistance on insulin regulation of the metabolic genes glucose-6-phosphate dehydrogenase (G6PDH) and fatty acid synthase (FAS) as well as insulin responsive proteins tribbles homolog (TRIB3) and sterol regulatory element binding protein (SERBP-1c) 1c.

Selenium, a micronutrient has been shown to be an effective insulin mimetic in Type …

One Fish, Two Fish, Red Fish, Blue Fish: The Analysis Of The Specter Cell Cycle Mutant In Zebrafish, Tetiana Petrachkova

Masters Theses

Cell division is controlled by genes that regulate the cell cycle. Here we show that the zebrafish specter (spr) mutant is mutation in the cyclin B1 gene, a gene necessary for the G2 to M transition of the cell cycle.

The spr mutation mapped to the cyclin B1 gene. Sequencing showed a transition (C139→T) that caused a nonsense mutation in exon 2 of the cyclin B1 gene. In situ hybridization of cyclin B1 revealed that the mRNA is absent in the mutant embryo by gastrulation. We found that the earliest visible mutant phenotype was a darkening of the head caused …

A Gravity Investigation Of The Tobacco Root Batholith Southwest Montana, Stephen Charles Tatum

Masters Theses

The objective of this research was to delineate and profile the Late Cretaceous Tobacco Root batholith in southwestern Montana through the application of the gravitational method. This survey was accomplished by obtaining 232 gravity measurements in four profiles across the batholith. After correcting for known variations in the gravity field, a Bouguer anomaly map of the batholith and surrounding host rocks was created. Four residual gravity profiles and map, created by subtracting the regional gravity from the Bouguer anomaly, reveal a maximum negative gravity anomaly in the center portion of the batholith which is parallel to the trend of the …

Microglia Respond To Both Permanent And Temporary Deaferentation In The Adult Zebrafish Olfactory Bulb, Amanda K. Mckenna

Masters Theses

The major goal of this study was to investigate a microglial response following deafferentation in the adult zebrafish, Danio rerio, olfactory bulb. Microglia were identified in the olfactory bulb using the 4c4 antibody and phagocytic-dependent labeling (DiA). Microglia responded to both methods of deafferentation namely, permanent (cautery) and temporary (Triton X- 100). On one and three days following both permanent and temporary deafferentation there was a significant increase in microglia in the treated olfactory bulb. At five and seven days after permanent and temporary deafferentation there was no longer a significant difference between the treated and untreated olfactory bulbs, …

Vaccinia Virus Flll Mediated Expedition Of Tanapoxvirus Replication In Cell Culture, Yih Wen Goh

Masters Theses

Tanapoxvirus (TPV) produces large but slow-forming plaques as opposed to vaccinia virus (VACV) that forms similar large plaques but more rapidly. A number of genes were identified in VACV, inclucding FllL, A33R, A34R and A36R that contribute to the regulation of virus release and dissemination, and are particularly responsible for the induction of actin tails. Among them, TPV lacks homologs of the FllL and A36R genes. F11Lmediated inhibition of RhoA-mDia signaling was shown to enhance the microtubules dynamics and modulates the cortical actin that assisted in the release of progeny virus from infected cells. To understand the possible effects of …

Use Of A Specific Alpha7 Nicotinic Acetylcholine Receptor Agonist Can Prevent Loss Of Retinal Ganglion Cells In An In Vivo Rat Glaucoma Model, David Mata

Masters Theses

Acetylcholine (ACh) has been shown to have a neuroprotective effect against glutamate-induced excitotoxicity in cultured retinal ganglion cells (RGCs) through activation of α7 nicotinic ACh receptors (nAChRs). In this study, the neuroprotective effects of the α7 nAChR agonist, PNU-282987, were investigated using an in vivo model of glaucoma in adult Long Evans rats. Hypertonic saline injections were used to induce a glaucoma model. After one month, retinas were removed, flat mounted, fixed and labeled with an antibody against Thy 1.1 to label RGCs and fluorescently tagged for visualization. Eye drop application of PNU-282987 resulted in neuroprotection against RGC loss in …

Isolation Of A Dosage Dependent Suppressor Using Saccharomyces Cerevisiae As A Model System, Rachel Chimner

Masters Theses

Human pathogenic Yersinia use a type three secretion system to deliver various effector proteins into host cells. Once these effector proteins are within the cell, they elicit a cascade of events that disrupt the normal immune response. One of these effectors, YopT, is known to disrupt actin distribution but it is currently unknown what YopT targets within the host cell. To investigate the cellular targets of the YopT effector, we use a yeast model system and a dosage-dependent suppression screen. The dosage-dependent suppression screen isolated three plasmids able to suppress YopT induced lethality within yeast. One of them, 2T9, was …

The Rise And Fall Of Kin Structure In The Neotropical, Family-Living Buff-Breasted Wren (Cantorchilus Leucotis) In Gamboa, Panama, Sarah C. Alessi

Masters Theses

Family-living species provide an exciting model to examine how natal dispersal and kin structure influence genetic structuring within local populations. Juvenile buff-breasted wrens (Cantorchilus leucotis) of both sexes delay dispersal and exhibit short-distance natal dispersal, which should lead to kin-structured populations in which relatives of both sexes occupy neighboring territories. Blood samples collected from juvenile and adult wrens in Gamboa, Panama were analyzed using microsatellite markers to determine whether related individuals are spatially clustered on neighboring territories, spatial clusters of relatives change over time, and if kin structure is sex-specific. Global and local spatial autocorrelation analyses detected genetic …

Modulatory Efferent Morphology And Target Allocation With Co-Innervating Leech Motor Neurons, James Melchior

Masters Theses

The leech, Hirudo, has two efferents that converge upon the heart tube (HT) muscle; the segmentally iterated heart excitor motor neurons (HE), and the modulatory heart accessory neurons (HA). Using intracellular dye injections and antibody labeling, we were able to visualize and distinguish the morphologies of these two efferents. We found that HA(5) provides dense coverage of the anterior segments of heart tube muscle and extends along the HT into the posterior segments 6 and 7, while HA(6) projects centrally for several segments before extending into the periphery. HA(5) and HA(6) homologs show little or no overlap on HT …

A Quantitative Analysis Of Morphological Changes In Specific Laminae Of The Olfactory Bulb Of Adult Zebrafish Following Peripheral Sensory Deafferentation, Travis L. Devlin

Masters Theses

Permanent removal of the olfactory organ in adult zebrafish has been shown to result in a significant reduction in the total volume of the ipsilateral olfactory bulb. The overall objective of the current project was to investigate the hypothesis that contact between the axons of the olfactory sensory neurons and the olfactory bulb is necessary for the maintenance of the normal post-synaptic organization of the olfactory bulb by quantifying the morphological changes that take place within specific laminae of the olfactory bulb following peripheral deafferentation. Complete, unilateral ablation of the olfactory organ resulted in permanent deafferentation of the ipsilateral olfactory …

Metabolic And Phenotypic Characterization Of Aerobic Pcb Degrading Bacteria Isolated From Kalamazoo River Sediments, Brenton K. Lehmkuhl

Masters Theses

The Kalamazoo River is contaminated with polychlorinated biphenyls (PCBs) which are neurotoxins and suspected carcinogens. The goal of this study was to isolate, identify, and metabolically characterize PCB degrading strains of aerobic bacteria. Biphenyl enrichments resulted in the isolation of putative PCB degrading strains from different locations along the river. Based on 16S rRNA gene analysis the isolated strains were identified as belonging to the genera of Achromobacter, Acidovorax, Cellulosimicrobium, Paenibacillus, Pseudomonas, and Rhodococcus. These strains were screened for their PCB degrading ability and congener specificity. All of the isolated strains degraded PCBs via the 2,3-dioxygenase pathway. The range …

Changes In Microbial Community Structure Of Petroleum Contaminated Sediments Are Reflected In Subsurface Geophysical Signatures, Jonathan P. Allen

Masters Theses

Petroleum contamination of sediments leads to dynamic changes in the subsurface. These include changes in the microbiota as well as in the subsurface geophysical and geochemical properties. Anomalously high conductivity values observed in subsurface zones contaminated with light non aqueous phase liquids (LNAPLs) have been suggested to be the result of microbial activity. Therefore, we investigated the interdependence between geoelectrical signatures and microbial community structure in petroleum contaminated field sediments and laboratory column experiments. Spatial and temporal changes in electrical conductivity of the subsurface paralleled changes in microbial community composition, with the highest conductivity values concomitant with specific anaerobic hydrocarbon-degrading …

Identification And Characterization Of Cellular Targets Of The Bacterial Cytotoxin Yopt In Saccharomyces Cerevisiae, Paul David Caccamo

Masters Theses

Human pathogenic Yersinia spp. utilize Type III Secretion to deliver six effector proteins into host cells. The injected proteins resemble eukaryotic signal transduction molecules and are capable of disrupting signaling pathways in order to subvert the functions of the targeted cell or disrupt communication with surrounding cells. As a result, bacterial invaders are not only able to survive the threat of a host immune response, but can thrive despite it. YopT is a cysteine protease that cleaves RhoGTPases, releasing them from the membrane and thus from their role as initiators of signaling pathways, including the nucleation of actin and …

Habitat-Specific Diet Of The Mottled Sculpin And Its Impact On Benthic Invertebrate Community Structure, Brendan M. Earl

Masters Theses

The relationships between predators and their prey are important and influential components in the structure of ecological communities. These interactions not only impact the species involved, but can also have a wide range of direct and indirect effects that resonate throughout the community. In Michigan trout streams, one of the main predators of benthic invertebrates is the mottled sculpin (Cottus bairdi) whose diet and selective predation may influence benthic invertebrate community structure. Using gastric lavage, the stomach contents of sculpins from both erosional and depositional habitats were collected and analyzed to determine the main prey types, prey preference, …

Development And Characterization Of Monoclonal Antibodies Directed Against Tanapox Virus, Michael Franz

Masters Theses

The initial symptoms of a Tanapoxvirus (TPV) infection are indistinguishable from smallpox, which is caused by variola virus (VV). In the post-9/11 area, reagents that can quickly differentiate a TPV infection from smallpox are very desirable, but currently unavailable. Monoclonal antibodies (mAbs) directed specifically against TPV can be used for this purpose. Six mAbs were developed and characterized that specifically bind to TPV infected owl monkey kidney (OMK) cells, but not uninfected cells. The apparent molecular mass of the TPV protein(s) recognized by 5 mAbs were calculated using the Western blot technique. One mAb demonstrated no binding using the Western …

Mechanism Of Chromium Reduction Of Benzo[A]Pyrene Diolepoxide Mutagenesis In Human Fibroblasts, Cara Suzanne Kriss

Masters Theses

Environmental agents can cause an increase in cellular stress and damage DNA which can lead to diseases such as cancer. Chromium produces cellular stress by increasing the reactive oxygen species through a Fenton-like reaction, where chromium reacts with hydrogen peroxide to form hydroxyl radicals. Benzo[ a ]pyrene is an environmental carcinogen that is metabolized by cytochrome p450 enzymes into benzo[a]pyrene diolepoxide (BPDE). BPDE is highly reactive with DNA producing large DNA-adducts primarily on guanine nucleotides. The primary intracellular pathway by which mammalian cells remove damaged DNA caused by bulky mutagens is nucleotide excision repair. We have found that, in BPDE …

Development Of A Method For Determining Antioxidant Efficacy Against Hydroxyl Radicals, Cherie Hacker

Masters Theses

Hydroxyl free radicals are biologically important molecules in that they attack proteins, lipids and DNA to obtain an electron to fill their outer valence shell. The consequences of such attacks include protein degradation, lipid peroxidation and DNA damage, which leads to many diseases and cancer. While there are many antioxidant assays available to predict anti-radical properties of compounds against different free radicals, the assessment of hydroxyl radical damage has been challenging. This is due to the extremely high reaction rate of hydroxyl radicals. The present study defines an in vitro assay that quantitatively detects antioxidant efficacy against hydroxyl free radicals, …

Dynein’S Binding Ability To Microtubules In Budding Yeast Saccharomyces Cerevisiae, Gregory Lyle Waltz

Masters Theses

Cytoplasmic dynein is a minus-end directed microtubule motor that recently has been described as a member of the AAA⁺ ATPase family. Dyn1p contains four ATP-binding consensus sequences. To understand the role of each ATP-binding site we have begun to systematically mutate the consensus sequence at each ATP-binding site. Thirty-two mutant alleles have been constructed and integrated into the yeast Saccharomyces cerevisiae. We have examined each mutant for ability to grow in rich media, to produce binucleate cells at 12°C, ability to grow in the absence of CIN8, and ability of Dyn1p to bind microtubules. Attempts to localize …

The Role Of Glutathione In The Defense Pathway Response Of Arabidopsis Thaliana To The Pathogen Pseudomonas Syringae Pathovar Tomato Dc3000 Avrb, Allison Patrice Mckenna

Masters Theses

Inoculation of Arabidopsis thaliana with Pseudomonas syringae pv. tomato DC3000 AvrB (Pst) results in a series of biochemical changes, including an oxidative burst, accumulation of salicylic acid, (de)phosphorylation of proteins, localization of transcription factors to the nucleus and ultimately expression of pathogenesis-related genes. The redox status within plant cells, which is maintained by a cycle of antioxidants that are largely dependent on the reduced form of glutathione (GSH), because of its ability to donate electrons that are necessary to quench reactive oxygen species (ROS). This study focuses on the role of glutathione in the early defense responses of Arabidopsis to …

Development And Characterization Of Monoclonal Antibodies Directed Against Yaba-Like Disease Virus, Scott Haller

Masters Theses

The hybridoma technique has been used for the production of monoclonal antibodies (mAb) directed against yaba-like disease virus (YLDV). Spleen cells, obtained from female BALB/c mice immunized with YLDV, were fused with P3x63.Ag8.653 myeloma cells and hybrids were selected. Hybridoma clones were screened for production of anti-YLDV antibodies by Indirect Immunofluorescence (IF) microscopy. Positive hybridoma clones were recloned via limiting dilution and characterized. A single clone (H12) has been selected that specifically reacted with YLDV infected cells and not uninfected cells. Immunodiffusion technique determined H12 monoclonal antibody as an IgG1 isoptype immunoglobulin. H12 antibodies recognized a late YLDV protein, and …

Identification And Characterization Of Zinc-Responsive Genes In Pseudomonas Fluorescens, Thomas L. Wilson

Masters Theses

Genes responsive to elevated concentrations of zinc were identified via transposon mutagenesis in the common soil bacterium, Pseudomonas fluorescens ATCC13525. Some of these genes were essential to maintain metal homeostasis in the bacterial cell. DNA sequences of the transposon-tagged genes were determined by DNA sequencing of arbitrary PCR products. DNA sequence analysis indicated that one gene was similar to P-type ATPases responsible for transporting metal ions out of the cell. The corresponding mutant was sensitive to zinc, cadmium, and lead indicating that this gene may be responsible for defending Pseudomonas fluorescens against these metal ions. Four zinc-induced genes shared similarity …

Role Of Dopamine D4 Receptor In The Genomic And Behavioral Effects Of Psychostimulants: Relevance To Schizophrenia, Bina Garimella

Masters Theses

The role of dopamine D4 receptors in the induction and expression of behavioral sensitization to amphetamine, cocaine and PCP was investigated in this study. Behavioral changes and genomic responses accompanying sensitization were examined using a highly selective D4 receptor antagonist, PNU-101387G. Induction and expression of behavioral sensitization to cocaine was blocked by PNU-101387G. However, the D4 antagonist did not modulate the induction and expression of behavioral sensitization to PCP. Neuroadaptive genomic responses accompanying acute and chronic effects of amphetamine and their modulation by PNU-101387G was examined by looking at alterations in the expression of two immediate-early genes: c-fos and NGFI-A. …

Cadmium Induced Gene Expression And Signal Transduction Pathway, Daisuke Maki

Masters Theses

Cells respond to cadmium (Cd), a common environmental contaminate, by potentially decreasing reduced intracellular glutathione, as well as, increasing the expression of several antioxidant genes. One of these antioxidant genes, glucose-6- phosphate dehydrogenase (G6PDH), is the rate limiting enzyme of the pentose phosphate pathway. This pathway produces NADPH which is used for maintenance of reduced glutathione so, it is hypothesized that Cd should increase G6PDH expression. In this study, we demonstrate that Cd increases the level of G6PDH mRNA in primary rat hepatocytes in culture. In the presence of the antioxidants, N-acetylcysteine (NAC), Trolox, or glutathione monoethyl ester an attenuation …