Life Sciences Commons^™

Investigation Of Host Responses Upon Infection Of Distinct Toxoplasma Strains, Rachel Devonne Hill

Doctoral Dissertations

Toxoplasma gondii is the causative agent of Toxoplasmosis in human and animals. T. gondii isolates are highly diverse. Hundreds of genotypes have been identified, but only three clonal lineages, namely Type I, II and III are prevalent worldwide. In mouse model, T. gondii strains can be divided into three groups based on their virulence, including the virulent (LD₁₀₀=1), the intermediately virulent (LD₅₀ = 10³-10⁴) and the non virulent (LD₅₀ > 10⁵). The clonal Type I, II and III T. gondii strains belong to these three groups, respectively. Epidemiologic studies suggest the …

The Role Of A Glycosyltransferase, St6gal I In Regulating Viral Specific T And B Cell Responses, Junwei Zeng

Doctoral Dissertations

Glycosylation is one of the most abundant post-translational modifications of proteins. Glycoproteins participate in virtually all aspects of cellular functions. ST6Gal I is a glycosyltransferase highly expressed by B and T cells. Here, we interrogated the role of ST6Gal I in viral specific B and T cell immune responses, as well as examined how loss of this enzyme impacted viral pathogenesis.

First, to understand how loss of ST6Gal I expression impacted viral specific humoral responses, we infected ST6Gal I^-/- mice with influenza virus. We discovered that loss of ST6Gal I expression results in both reduced influenza specific antibodies levels …

Assessing The Efficiency Of Phenotypic And Molecular Genotype Selection Methods For Complex Traits In Soybean, Catherine Nyaguthii Nyinyi

Doctoral Dissertations

Soybean [Glycine max (L.) Merrill] is an important source of protein and oil for both nutritional and industrial applications. Increasing seed yield and protein concentration is the main goal of many soybean breeders to meet market demands. Soybean breeders have occasionally succeeded in producing high yielding cultivars with increased protein content using conventional means despite the negative correlation that exists between these two traits. The efficiency of breeding for seed yield and protein concentration improvement in soybean could be increased using marker assisted selection (MAS) breeding strategies to select genotypes containing favorable alleles for faster cultivar development. The objective …

Nano-Dispersing Lipophilic Antimicrobials For Improved Food Safety, Bhavini Dipak Shah

Doctoral Dissertations

Naturally occurring food antimicrobials such as plant essential oils are receiving tremendous interest as intervention systems to enhance microbiological safety and quality. Poor water solubility of essential oils makes it difficult to incorporate them in foods, impacting visual appearance, antimicrobial effectiveness, and possibly organoleptic properties. Engineered nanoscale delivery systems can principally solve these challenges, but those based on low-cost food ingredients and inexpensive and scalable processes are currently scarce. This dissertation presents a simple and scalable two-step technology to prepare nano-delivery systems. The first encapsulation step, based on emulsion-evaporation, involves preparing emulsions composed of an oil phase with thymol or …

Aqueous Micellar Gels Of Multiresponsive Hydrophilic Aba Linear Triblock Copolymers, Jeremiah Wallace Woodcock

Doctoral Dissertations

This dissertation presents the synthesis of a series of well-defined multiresponsive hydrophilic ABA linear triblock copolymers and the study of their aqueous micellar gels. By incorporating a small amount of stimuli-responsive groups into thermosensitive outer blocks of ABA triblock copolymers, the lower critical solution temperatures (LCST) of thermosensitive blocks can be modified by external stimuli. Consequently, the sol-gel transition temperatures (T_sol-gel) of their aqueous solutions can be altered.

Chapter 1 describes the synthesis and solution behavior of a series of thermo- and light-sensitive triblock copolymers, poly(ethoxytri(ethylene glycol) acrylate-co-o-nitrobenzyl acrylate)-b-poly(ethylene oxide)-b …

Comparing The Midgut Regenerative Responses In Bacillus Thuringiensis-Susceptible And Resistant Heliothis Virescens Larvae, Anais Severiana Castagnola

Doctoral Dissertations

The crystal (Cry) toxins from Bacillus thuringiensis (Bt) display high specificity and toxicity against relevant insect pests and the use of Bt-based products continues to contribute to insect pest management. To protect this investment, further its potential, and investigate possible unintended effects, various research questions have been proposed. One issue related to Bt usage is the evolution of pest resistance to Bt toxins. The midgut epithelium is targeted by Cry toxins killing enterocytes, facilitating invasion of the hemocoel, leading to septicemia and mortality. While resistance may emerge from alterations to these steps, most research efforts have been focused on reduced …

Production And Roles Of Volatile Secondary Metabolites In Interactions Of The Host Plant Tomato (Solanum Lycopersicum L.) With Other Organisms At Multi-Trophic Levels., Gitika Shrivastava

Doctoral Dissertations

Tomato (Solanum lycopersicum L.) produces an array of volatile secondary metabolites that act as constitutive and induced defenses against a variety of insect pests and diseases. We studied the effect of beneficial microorganisms, an arbuscular mycorrhiza fungus (AM), Glomus intraradices, an entomopathogenic fungus (Bb), Beauveria bassiana and a combination of both (AM+Bb), as well as, pests, such as rootknot nematode (RKN) (Meloidogyne incognita) and beet armyworm (BAW) (Spodoptera exiguae H.) on the production of volatile compounds in the leaves and roots of tomato. Benzyl alcohol, 3-hexenoic acid, total other compounds and β-myrcene were significantly increased ( …

Suppression Of Chronically Induced Breast Carcinogenesis And Role Of Mesenchymal Stem-Like Cells, Kusum Rathore

Doctoral Dissertations

Sporadic breast cancers are mainly attributable to long-term exposure to environmental factors, via a multi-year, multi-step, and multi-path process of tumorigenesis involving cumulative genetic and epigenetic alterations in the chronic carcinogenesis of breast cells from a non-cancerous stage to precancerous and cancerous stages. Epidemiologic and experimental studies have suggested that various dietary compounds like green tea and grape seed may be used as preventive agents for breast cancer control. In this research, I have developed a cellular model that mimics breast cell carcinogenesis chronically induced by cumulative exposures to low doses of environmental carcinogens. I used the chronic carcinogenesis model …

Characterization Of The Human Host Gut Microbiome With An Integrated Genomics / Proteomics Approach, Alison Russell Erickson

Doctoral Dissertations

The new field of ‘omics’ has spawned the development of metaproteomics, an approach that has the ability to identify and decipher the metabolic functions of a proteome derived from a microbial community that is largely uncultivable. With the development and availabilities of high throughput proteomics, high performance liquid chromatography coupled to mass spectrometry (MS) has been leading the field for metaproteomics. MS-based metaproteomics has been successful in its’ investigations of complex microbial communities from soils to the human body.

Like the environment, the human body is host to a multitude of microorganisms that reside within the skin, oral cavity, vagina, …

Immunity And Immunopathology In Acute Viral Infections, Shalini Sharma

Doctoral Dissertations

Herpetic stromal keratitis (HSK) is an immunopathological and tissue destructive corneal lesion caused by herpes simplex virus (HSV) infection, which induces an intense inflammatory response and finally leads to blindness. Accumulating evidence using the murine model has shown that Th-1 phenotype CD4⁺ T cells orchestrating the inflammation mainly contribute to the immunopathological reaction in HSV-1 infected cornea. Initially various innate immune cells recruit and produce numerous inflammatory and angiogenic molecules into the corneal stroma those in turn drive the corneal immunopathology.

While the basic principles of immunity to the influenza A viruses (IAV) are probably similar for all vertebrates, …

An Evaluation Of Disturbance-Induced Nutrient Changes And Climate Responses Of Loblolly Pine Xylem, Rebecca Lynne Stratton

Doctoral Dissertations

Dendrochronological techniques are currently limited to the identification of visible fire scars. However, through the development of new dendrochemical techniques, the potential exists to provide insight into a broader array of pyric ecosystems. In addition, the ability to identify historic climate-growth responses provides a better understanding of the conditions under which historic fire regimes occurred.

This study provides the groundwork for the identification of a dendrochemical nutrient fire signature in xylem and identifies the climate-radial growth responses of loblolly pine (Pinus taeda L.) on five sites in the Piedmont of South Carolina. Changes in N, P, K, Ca, Mg, …

Development And Application Of Liquid Chromatography-Tandem Mass Spectrometry Methods To The Understanding Of Metabolism And Cell-Cell Signaling In Several Biological Systems, Jessica Renee Gooding

Doctoral Dissertations

Liquid chromatography tandem mass spectrometry has become a powerful tool for investigating biological systems. Herein we describe the development of both isotope dilution mass spectrometry methods and targeted metabolomics methods for the study of metabolic and cell-cell signaling applications.

A putative yeast enzyme was characterized by discovery metabolite profiling, kinetic flux profiling, transcriptomics and structural biology. These experiments demonstrated that the enzyme shb17 was a sedoheptulose bisphosphatase that provides a thermodynamically dedicated step towards riboneogenesis, leading to the redefinition of the canonical pentose phosphate pathway.

An extension of metabolic profiling and kinetic flux profiling methods was developed for a set …

The Utilization Of Mouse Models To Study Gene Functions: The Role Of Foxn3 And Chd2 In Murine Development And Cancer, George Azaz Samaan

Doctoral Dissertations

Murine model organisms are an essential tool in the scientific community quest to decipher the molecular etiology of human diseases. Currently, several methods are used to induce or reproduce human diseases in mouse models using advanced genetic engineering techniques to mutate the wild-type genes. We utilized the Baygenomics gene-trap method to study the effects of two mammalian genes: FOXN3 and CHD2. The Forkhead Box (FOX) family of transcription factors shares a common DNA-binding domain and has been associated with organ development, differentiation, cell growth and proliferation, and cancer. Meanwhile, the CHD (Chromodomain helicase DNA binding protein) family of proteins is …

Riparian Ecosystem Response To Hemlock Woolly Adelgid (Adelges Tsugae) Induced Eastern Hemlock (Tsuga Canadensis) Mortality In The Great Smoky Mountains National Park, Usa, Misty Dawn Huddleston

Doctoral Dissertations

An invasive insect, hemlock woolly adelgid (HWA), has initiated widespread hemlock decline and mortality in the Great Smoky Mountains National Park (GSMNP). Riparian hemlock mortality impacts on vegetative and aquatic systems of first-order, headwater streams were evaluated. Reference sites for this study were representative of the best available conditions within the GSMNP, with initial stages of HWA presence. Impacted sites were defined as areas with over 90 percent hemlock mortality. Impacted streams had decreased canopy coverage and increased light availability. Residual red maple, yellow birch, and sweet birch capitalized on the loss of hemlock, with increases in relative basal area …

Interaction Of A G Protein-Coupled Receptor (Ste2p) Of Saccharomyces Cerevisiae With Its Ligand And Its G-Protein Alpha Subunit, Li-Yin Huang

Doctoral Dissertations

The G protein-coupled receptor (GPCR) family is composed of hundreds of members and is expressed in eukaryotes. Each GPCR has seven transmembrane domains and is in charge of sensing changes from the environment, transducing signals, and activating a series of biological responses. The signal transduction pathway of the receptor starts from sensing outside signal and then activates G proteins. This signaling requires a tight control for activation without which impaired cellular function leads to pathology. We have used the pheromone alpha-factor receptor (Ste2p) of the yeast Saccharomyces cerevisiae as a model system to understand ligand binding, receptor activation, and G …

Multiple Responses By Cerulean Warblers To Experimental Forest Disturbance In The Appalachian Mountains, Than James Boves

Doctoral Dissertations

The Cerulean Warbler (Setophaga cerulea) is a mature forest obligate and one of the fastest declining songbird species in the United States. This decline may be related to a lack of disturbance within contemporary forests; however, the consequences of disturbance on the species have not been rigorously evaluated. Thus, we assessed multiple responses by Cerulean Warblers to a range of experimental forest disturbances across the core of their breeding range in the Appalachian Mountains. We quantified individual and population responses to these manipulations, and assessed the potential consequences of disturbance on the sexual signaling system. Male ceruleans were …

Functional Genomic Studies Of Soybean Defenses Against Pests And Soybean Meal Improvement, Jingyu (Lynn) Lin

Doctoral Dissertations

Soybean [Glycine max (L.) Merr.] is an important crop worldwide. It has been widely consumed for protein, oil and other soy products. To develop soybean cultivars with greater resistance against pests and improved meal quality, it is important to elucidate the molecular bases of these traits. This dissertation aims to investigate the biochemical and biological functions of soybean genes from four gene families, which are hypothesized to be associated with soybean defense against pests and soybean meal quality. There are three specific objectives in this dissertation. The first one is to determine the function of components in the salicylic …

Regulation Of B Cell Response To Respiratory Viruses, Aarthi Sundararajan

Doctoral Dissertations

Viruses replicating in the respiratory tract (RT) triggers a wide- range of cytokines and chemokines that have antiviral and pro-inflammatory features, instigating an efficient virus- specific B and T cell response that aids in virus- clearance. The majority of antibody secreting cells (ASCs) localizing in the upper RT secrete IgA that can effectively neutralize viruses. In addition, elements of B cell memory are generated that can provide protection from re-infection. Studies examining these aspects, following murine gammaherpesvirus 68 (MHV-68) infection comprise chapter 2 of the dissertation work. Our studies demonstrate that following MHV-68 infection, unlike influenza infection, resulted in a …

Endogenous Gypsy Insulators Mediate Higher Order Chromatin Organization And Repress Gene Expression In Drosophila, Shaofei Zhang

Doctoral Dissertations

Chromatin insulators play a role in gene transcription regulation by defining chromatin
boundaries. Genome-wide studies in Drosophila have shown that a large proportion of insulator sites are found in intergenic DNA sequences, supporting a role for these elements as boundaries. However, approximately 40% of insulator sites are also found in intragenic sequences, where they can potentially perform as yet unidentified functions. Here we show that multiple Su(Hw) insulator sites map within the 110 kb sequence of the muscleblind gene (mbl), which also forms a highly condensed chromatin structure in polytene chromosomes. Chromosome Conformation Capture assays indicate that Su(Hw) insulators mediate …

Evolution, Speciation, And Conservation Of Amblyopsid Cavefishes, Matthew Lance Niemiller

Doctoral Dissertations

Cave organisms are classic examples of regressive evolution, as many disparate taxa have evolved similar convergent phenotypes in subterranean environments. While recent phylogeographic and population genetic analyses have greatly improved our understanding of the evolutionary and biogeographic history of cave organisms, many questions remain unanswered or poorly investigated. I investigated several evolutionary and biogeographic questions in a model system for regressive evolution and studies of ecological and evolutionary mechanisms, amblyopsid cavefishes. In chapter I, I used recently developed methods to delimit species boundaries and relationships in a widely distributed cavefish, Typhlichthys. I show that species diversity in Typhlichthys is …

An Eating Frequency Prescription For A Behavioral Weight Loss Intervention, Jessica Lynne Bachman

Doctoral Dissertations

Improved weight loss interventions are needed to help reduce obesity. One dietary factor that has been effective in increasing weight loss is increased dietary structure. One method for increasing dietary structure is prescribing the frequency in which eating bouts (meals and snacks) occur. Eating frequency (EF) has been inversely related to body mass index (BMI) but the impact of EF on weight loss is unclear. This randomized controlled trial examined the effect of EF on hunger, the relative-reinforcing value of food, energy intake (EI), and weight loss during a 6 month behavioral weight loss intervention. Participants (age: 51.0 ± 9.9 …

Developing Biocontainment Strategies To Suppress Transgene Escape Via Pollen Dispersal From Transgenic Plants, Hong Seok Moon

Doctoral Dissertations

Genetic engineering is important to enhance crop characteristics and certain traits. Genetically engineered crop cultivation brings environmental and ecological concerns with the potential of unwanted transgene escape and introgression. Transgene escape has been considered as a major environmental and regulatory concern. This concern could be alleviated by appropriate biocontainment strategies. Therefore, it is important to develop efficient and reliable biocontainment strategies.

Removing transgenes from pollen has been known to be the most environmentally friendly biocontainment strategy. A transgene excision vector containing a codon optimized serine resolvase CinH recombinase (CinH) and its recognition sites RS2 were constructed and transformed into tobacco …

The Evolution And Mechanics Of Translational Control In Plants, Justin N. Vaughn

Doctoral Dissertations

The expression of numerous plant mRNAs is attenuated by RNA sequence elements located in the 5' and 3' untranslated regions (UTRs). For example, in plants and many higher eukaryotes, roughly 35% of genes encode mRNAs that contain one or more upstream open reading frames (uORFs) in the 5' UTR. For this dissertation I have analyzed the pattern of conservation of such mRNA sequence elements. In the first set of studies, I have taken a comparative transcriptomics approach to address which RNA sequence elements are conserved between various families of angiosperm plants. Such conservation indicates an element's fundamental importance to plant …

Studies On The Mechanism Of Homolog Pairing In Drosophila Male Meiosis, Jui-He Tsai

Doctoral Dissertations

Drosophila male is an example of achiasmatic meiosis which lacks crossingover and chiasmata during meiosis. Previous studies showed that homologous pairing of both euchromatin and centromeres is lost during middle prophase I, however, homologs are still connected as they form bivalents. The X-Y pair utilizes a specific repeated sequence within the heterochromatic ribosomal DNA blocks as a pairing site. No pairing sites have yet been identified for the autosomes. To search for such sites, we utilized probes specifically targeting heterochromatin regions to assay pairing sequences and behavior in meiosis by fluorescence in situ hybridization (FISH). We found that the fourth …

Nano-Enabled Synthetic Biology: A Cell Mimic Based Sensing Platform For Exploiting Biochemical Networks, Piro Siuti

Doctoral Dissertations

Exploring and understanding how the smallest scale features of a cell affect biochemical reactions has always been a challenge. Nanoscale fabrication advancements have allowed scientists to create small volume reaction containers that resemble the physical scale of cell membranes. Engineers seek to use biological design principles to manipulate information and import new functionality to such synthetic devices, which in turn, play a crucial role in allowing them to explore the effects of physical transport and extreme conditions of temperature and pH on reaction systems. Engineered reaction containers can be physically and chemically defined to control the flux of molecules of …

Endocytic Trafficking Is Required For Neuron Cell Death Through Regulating Tgf-Beta Signaling In Drosophila Melanogaster, Zixing Wang

Doctoral Dissertations

Programmed cell death (PCD) is an essential feature during the development of the central nervous system in Drosophila as well as in mammals. During metamorphosis, a group of peptidergic neurons (vCrz) are eliminated from the larval central nervous system (CNS) via PCD within 6-7 h after puparium formation. To better understand this process, we first characterized the development of the vCrz neurons including their lineages and birth windows using the MARCM (Mosaic Analysis with a Repressible Cell Marker) assay. Further genetic and MARCM analyses showed that not only Myoglianin (Myo) and its type I receptor Baboon is required for neuron …

Silvicultural Considerations For The Reintroduction Of American Chestnut, Castanea Dentata, To The Forests Of The Eastern United States, Cornelia Cooper Wells Pinchot

Doctoral Dissertations

In anticipation of widespread planting of putatively blight-resistant hybrid chestnuts (Castanea spp.), it is critical to understand the silvics and competitive ability of the species. This dissertation examines preliminary growth and survival of several species and genetic crosses of chestnut grown as 1-0 high-quality nursery seedlings and planted in two study sites: Southeastern Kentucky (Daniel Boone National Forest; chapter 2), and Northeastern Connecticut (Yale-Myers Forest; chapter 4). The effects of three silvicultural treatments on the Daniel Boone National Forest (DBNF), and four silvicultural treatments on the Yale-Myers Forest (YM) were evaluated. Furthermore, the effect of initial seedling size on …

In Situ Preconcentration By Ac Electrokinetics For Rapid And Sensitive Nanoparticle Detection, Kai Yang

Doctoral Dissertations

Reducing cost and time is a major concern in clinical diagnostics. Current molecular diagnostics are multi-step processes that usually take at least several hours or even days to complete multiple reagents delivery, incubations and several washing processes. This highly labor-intensive work and lack of automation could result in reduced reliability and low efficiency. The Laboratory-on-a-chip (LOC), taking advantage of the merger and development of microfluidics and biosensor technology, has shown promise towards a solution for performing analytical tests in a self-contained and compact unit, enabling earlier and decentralized testing. However, challenges are to integrate the fluid regulatory elements on a …

Nmr Structural Studies Of Endotoxin Receptor Cd14 In Complex With Gram-Negative And Gram-Positive Endotoxin, Seth Andrew Albright

Doctoral Dissertations

Endotoxin recognition by the innate immune receptor CD14 is a critical part of the innate immune system’s early detection and activation of the inflammatory response during microbial invasion. The differential recognition and high affinity binding of endotoxins from gram-negative and gram-positive bacteria is performed by the innate immune receptor CD14. Upon endotoxin binding, CD14 transfers the specific endotoxins to a Toll-like receptor signaling complex, which is responsible for initiating the intracellular signaling cascade. In the presence of overwhelming infection, the effects of CD14 lead to the over-activation of the inflammatory response, which results in the life threatening condition known as …

Distress Tolerance, Experiential Avoidance, And Negative Affect: Implications For Understanding Eating Behavior And Bmi, Christen Nicole Mullane

Doctoral Dissertations

Distress tolerance and experiential avoidance are important aspects of the coping process. In the current study, both were examined in relation to Body Mass Index and self-reported disturbances in mood and eating behavior. Distress tolerance was measured behaviorally and via self-report to elucidate the manner in which a) the ability to tolerate emotional distress, and b) the ability to persist behaviorally in the presence of stress-inducing stimuli were related to self-reported levels of depression, anxiety, maladaptive eating habits, and bodily concerns. A sample of 73 undergraduate students participated, and height, weight, and waist circumference were measured. Increased experiential avoidance was …