Life Sciences Commons^™

Short Term Effectiveness Of High Density Large Woody Debris In Asotin Creek As A Cheap And Cheerful Restoration Action, Reid Camp

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In response to human impacts, river restoration and rehabilitation actions have become a priority in the United States. In the Pacific Northwest, most restoration actions are focused on repairing degraded freshwater habitat to increase or improve Pacific salmonid production. However, traditional river restoration actions remained largely unchanged for over 100 years despite a lack of definitive evidence that the actions were effective. More recently, there has been a surge in process-based restoration actions, which aim to reestablish the physical and biological processes that maintain fluvial and floodplain environments by targeting the root causes of degradation in a watershed. Cheap and …

Examining The Association Between Children's Fruit And Vegetable Intake At And Away From School, Velarie Yaa Ankrah Ansu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Several school-based interventions aimed at increasing fruit and vegetables (FV) intake among children have demonstrated success in short-term interventions. The Fit Game is a school-based intervention aimed at encouraging children to consume increasing amounts of FV during a game, which is a narrative. Just as children are being encouraged to eat FV at school, so is it equally important for them to eat FV at home. Parents strongly influence the amount of FV children consume at home. The aim of this thesis is to examine associations between factors that influence consumption of fruits and vegetables at and away from school …

A Century Of Geomorphic Change Of The San Rafael River And Implications For River Rehabilitation, Stephen T. Fortney

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Suspended-load rivers are subject to rapid geomorphic changes. In particular during the Holocene Epoch, arroyos of the Colorado Plateau experienced several periods of rapid erosion and aggradation. The most recent period of entrenchment occurred around the turn of the 20th century. The mechanisms responsible for the modern period of aggradation that has followed the most recent period of entrenchment have not been well documented. The research presented in this thesis reveals the mechanisms responsible for modern alluviation of the San Rafael River, which drains the Colorado Plateau

The lower 87 km of the San Rafael River, which enters the Green …

Matching Watershed And Otolith Chemistry To Establish Natal Origin Of An Endangered Desert Lake Sucker, Deanna Strohm

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Like many native endemic desert freshwater fish species, the June Sucker (Chasmistes liorus) is currently listed as endangered. Managers have increasingly turned to habitat restoration as a key component to recovery plans. For endangered species, one of the primary outcomes of habitat restoration is that it should result in successful reproduction and recruitment of individuals into the adult population. Confirmation of natural recruitment as a function of habitat restoration can only be achieved by establishing natal origins.

Recent research has proven the validity of otolith microchemistry, a technique that analyzes small quantities of elements, to trace potamodromous fish …

Structural And Compositional Patterns In Forest Communities In The Intermountain West Across Multiple Scales, Marcella A. Windmuller-Campione

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The United States Department of Agriculture (USDA) strives to use science-based research to both protect and enhance the management of natural resources. From this overarching goal, the USDA has a specific objective to protect the health and sustainability of forest and rangeland ecosystems. Based on this specific objective, an Advisory Board of natural resource scientists within the Quinney College of Natural Resources (QCNR) was awarded a National Institute of Food and Agricultural (NIFA) grant to train two PhD and two MS students. Their research would focus on managing for resilient forest ecosystem in the Intermountain West.

With input from the …

Ecology, Behavior And Taxonomy Of Anurans From Brazil's Atlantic Forest, Rodrigio Barbosa Ferreira

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Anura is a diverse group with more than 7382 species described, which represents 88% of the species belonging to the Class Amphibia. Anurans are among the first organisms to be affected by environmental stressors, so when they show decline in the wild, it is a warning to other species, including humans. It is alarming that one-third of the world’s anurans are facing extinction. Following the same trend, a substantive portion of the 988 recognized species of the Atlantic Forest have suffered population declines and local extinctions, attributed primarily to habitat changes.

Despite the unique life history characteristics that make amphibians …

Modeling The Ecological Consequences Of Visitor Behavior In Off-Trail Areas Of Dispersed Recreation Use, Ashley L. D'Antonio

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Parks and protected areas are often created to protect important social, ecological, or cultural resources from impairment. In the United States, a large majority of these parks and protected areas are also public land where recreational activities such as hiking or scenic driving are allowed. Managers of many parks and protected areas must therefore try to protect resources while also allowing for recreation use that may put these resources at risk for damage. The field of recreation ecology is interested in understanding how recreation use in parks and protected areas can sometimes cause ecological impacts to vegetation, soil, wildlife, water, …

Virulence Evolution Of Fungal Pathogens In Social And Solitary Bees With An Emphasis On Multiple Infections, Ellen G. Klinger

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The health of pollinators, especially bees, is of the utmost importance to success of many agricultural ecosystems. Microorganisms can cause diseases in bees; such microbes are pathogenic. The ability of a pathogen to cause harm to its host (such as a bee) is termed its virulence. Studying the evolution of different levels of virulence can lead researchers to a better understanding of pathogens, and potentially predict how much harm a pathogen can cause in the future. We studied the evolution of virulence levels for a fungal disease of bees. This group of fungi is composed of 28 species, and some …

Participant Perceptions Of Range Rider Programs Used To Mitigate Wolf-Livestock Conflicts In The Western United States, Molly Parks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Range Rider Programs (RRPs) are one example of a proactive non-lethal tool that has been implemented in western United States to mitigate gray wolf (Canis lupus) and livestock conflicts. Because RRPs are an emerging non-lethal tool that little is known about, I selected a qualitative research approach to examine participant perceptions to further contemporary understanding of how these efforts are implemented and potential benefits. I surveyed 51 participants from 17 Range Rider Programs (RRPs) in Montana, Washington, and Oregon to determine participant perceptions regarding effectiveness of RRPs as a non-lethal approach to mitigate wolf-conflicts.

I developed a RRPs typology based …

The Impact Of The Updated National School Lunch Program Meal Standards On Fruit And Vegetable Consumption Among Elementary School Students In Cache County Utah, Jillian C. Fox

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Due to the short time the updated National School Lunch Program standards have been in place since fall of 2012, few research studies have explored what effect these new standards have had on fruit and vegetable (F/V) consumption, particularly among elementary school students. Because the new standards require schools to offer students more F/V than before, researchers are interested to know if F/V consumption has indeed increased.

The participants in the study were enrolled in a program to motivate students to eat more F/V – the Food Dudes program. The results of the data analysis found that most students, regardless …

Using Network Models To Predict Steelhead Abundance, Middle Fork John Day, Or, Monica R. Blanchard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

It is important in the management of threatened and endangered species to have informed population estimates. Population estimates are used to gage whether or not recovery goals are being met. When assessing Pacific salmonids this assessment involves sampling a small subset of the population and then scaling up to estimate larger populations units. This is complicated by the fact that fish populations are not evenly distributed along river systems but respond to fluctuating physical and biological stream properties. We used rapid assessment survey methods and the River Styles classification to explore fish-habitat relationships. River Styles is a classification system that …

Analysis Of Quality Of Two Different Varieties Of Peaches With Respect To Organic And Conventional Cultivation Techniques, Shruti D. Sawant

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The worldwide demand for organic produce has been on the rise in recent years. This is a result of consumer concerns about the environment and chemicals used in food production. In addition, consumers have demonstrated that they are willing to pay premium prices for organic produce based on the general assumption that organic produce is more nutritious, environmentally friendly, and better-tasting. There have been several studies that have reported significant differences with organic and conventionally grown produce. Organic fruits and vegetables have been shown to have higher dry matter, antioxidants. In addition, it has also been shown to be smaller …

Fire Environment Analysis At Army Garrison Camp Williams In Relation To Fire Behavior Potential For Gauging Fuel Modification Needs, Scott M. Frost

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Large fires (400 ha +) occur about every seven to ten years in the vegetation types located at US Army Garrison Camp Williams (AGCW) practice range located near South Jordan, Utah. In 2010 and 2012, wildfires burned beyond the Camp’s boundaries into the wildland-urban interface. The political and public reaction to these fire escapes was intense. Researchers at Utah State University were asked if a spatially organized system of fuel treatments could be developed to prevent future escapes. The first step of evaluation was to spatially predict fuel model types derived from a random forests classification approach. Fuel types were …

Water Decision-Making Under Uncertainty, Augustina Yaa Oye Odame

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This dissertation is made up of three separate studies under the unifying theme of “Water Decision-Making under Uncertainty.” The first study analyzed a farmer’s decision to invest in a more efficient irrigation system given uncertainty about future water supplies and his post-investment efficiency. It found the price at which farmers would no longer produce to be a bigger consideration in irrigation investment than previously thought. It also found support for a careful identification and consideration of all significant sources of uncertainty in order to create better policy incentives for irrigation technology investments.

The second study extended the first to allow …

Implementation Of Online Tutoring Program To Increase University Student Information Retention, April Litchford

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This thesis discusses an online tutoring program, MasteringNutrition©, that was implemented as a required portion of an entry level collegiate nutrition course. The tutoring program was introduced to test the ability of the program to improve memory of nutrition information taught during the course. The MasteringNutrition© program combines various teaching techniques that have been successful in increasing student learning. The major techniques discussed include: Socratic questioning, metacognition, and problem based learning. These techniques are incorporated into the MasteringNutrition© program.

To test the effect of the Mastering© tutoring program, ten questions specific to course learning objectives were asked of students in …

Effects Of Environmental Water Transfers On Stream Temperatures, Logan Elmore

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Low streamflows and warm stream temperatures, caused mainly from agricultural diversions, currently limit available habitat and productivity of trout, including native Lahontan cutthroat trout in Nevada’s Walker River Basin. Environmental water purchases, which transfer water from willing sellers to instream uses (i.e for fish), are being evaluated to improve instream habitat. To determine which environmental water purchases to prioritize, this study was undertaken to build a computer model in order to simulate stream temperatures under differing environmental water transfer scenarios. Model runs simulate a range of environmental water transfers at major diversions and reservoirs throughout the Walker River Basin. Results …

Annotation Tools For Multivariate Gene Set Testing Of Non-Model Organisms, Russell K. Banks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Microarray chip technology enables researchers to obtain measures of gene activity for essentially all genes in an organism. After grouping genes into biologically meaningful sets, researchers employ certain statistical tests to identify which gene sets (biological processes) show different levels of activity across different treatment groups. The idea is to identify which biological processes are significantly affected by a certain treatment/condition in a given organism.

Non-model organisms (such as sheep) are not widely studied so gene set membership information is not always readily accessible. This thesis work utilizes two microarray studies involving sheep to provide researchers with working examples of …

Investigation Of Sugar/Polyols As Weakly Interacting Cosolvents And Their Influence On Hardening Of High-Protein Nutrition Bars, Sami Kadhim Hassan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Western Dairy Center (WDC) at Utah State University demonstrated opportunities to improve the quality of high-protein snack foods that becoming more prevalent in western diets. Previously, such high-protein nutrition bars became too hard during storage and they had a limited shelf life, resulting in disappointment by consumers or loss of product as older products needed to be discarded.

With sponsorship as a doctoral student by the Iraq Ministry of Higher Education and Scientific Research and in conjunction with WDC researchers, an investigation was conducted into the chemistry of high-protein nutrition bars and how the various components (protein, carbohydrate and …

Novel Techniques To Determine Soil Evaporation Rates: Heat Pulse Probe And Automated Microlysimeter, Kashifa Rumana

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Increase in world population rate has augmented the global water use in municipal, industrial, and agricultural sectors, with renewable water resources changing
very little with time. Climate change and variability, degradation of water quality as a result of industrial waste streams, animal manure and waste, application of chemicals, pesticides, pharmaceuticals, heavy metals, etc. have largely influenced the quantity and quality of soil water. Root zone water helps sustain the agricultural industry by providing much of the water needed for irrigation. It is critical to monitor the soil water availability, especially within the plant root zones. The subsurface water tends to …

Contribution Of A Novel Obligatory Heterofermentative Nonstarter Lactobacillus Species To Late Gassy Defect In Cheddar Cheese, Fatih Ortakci

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Cheddar cheese is usually aged for 3 to 24 months at temperatures ranging from 5 to 13°C. Ripening at elevated temperatures hastens the process, reducing manufacturing costs and enabling manufacturers to bring the product to market more quickly. However, cheeses ripened at elevated temperatures sometimes exhibit late gassy defect that may cause a textural defect, commonly referred to as slit defect. This results in crumbling and
losses during cutting of as much as 50%, making slit defect a major economic issue in the cheese industry. Moreover, loose or blown cheese packages are unsuitable for sale in the supermarkets due to …

Ecology And Behavior Of Coyotes In Urban Environments At Varying Spatial Scales, Sharon A. Poessel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As urban development continues to increase throughout the world, wildlife species, including carnivores, will be affected either positively or negatively. Coyotes (Canis latrans) have learned to efficiently adapt to highly developed areas, and conflicts between humans and coyotes, such as attacks on humans and pets, are increasing. We conducted three studies of urban coyotes to understand the factors affecting habitat use by coyotes so that wildlife managers can reduce human-coyote conflicts. Each study was conducted at progressively larger scales, with the first study at a fine scale using captive coyotes, the second study at a local scale in the …

Aqueous Solvation Method For Recombinant Spider Silk Proteins, Justin A. Jones

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Spider silk is a remarkable material that has recently garnered significant international interest due to its broad applicability and natural composition. Spider silk fibers demonstrate unparalleled mechanical properties and their biocompatability will allow them to replace products currently on the market such as fibers, threads and sutures that are made from traditional polymers. As spiders cannot be farmed, an emphasis in the Lewis lab is being placed on producing recombinant spider silk proteins (rSSP) in a variety of hosts, including alfalfa, goats, silkworms and Escherichia. coli. To this end, alfalfa, goats and silkworms are being generated with unique rSSP's …

Introducing Two New Weed Control Tools: A "Smart" Spray Wand And A Wildland Weed Treatment Time Model, Bryan E. Dayton

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wildland invasive weed treatment, a primary task of land managers, is expensive. Variables including weed canopy cover, slope, land cover, and weed visibility can affect treatment time and cost. A partnership was established with the Department of Plants, Soils, and Climate at Utah State University, Providia Management Group (PMG Environmental LLC) and Jardyne Technologies to develop a wildland weed treatment time model to better understand the effect of these variables on treatment time.

The “smart” spray wand (SSW) is a new precision tool used to develop this model. The SSW is a spray wand with an integrated GPS and a …

Binding Interactions Of (R)- And (S)-Hydroxypropyl-Com Dehydrogenases And The Zinc Knuckle Proteins Air1 And Air2, Jeremy W. Bakelar

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A thorough understanding of protein function requires knowledge of how proteins interact with their substrates and with other proteins. The work entailed in this dissertation describes the binding interactions of proteins from two different model systems: (1) the dehydrogenase enzymes R- and S-HPCDH and (2) the zinc knuckle proteins Air1 and Air2.

R- and S-HPCDH are highly similar enzymes (42% identical) that function in a unique metabolic pathway found in the soil bacterium Xanthobacter autotrophicus. The bacterium produces R- and S-HPCDH simultaneously to facilitate the transformation of two different forms of the organic …

Improvement Of Nutrient Utilization Efficiency, Ruminal Fermentation And Lactational Performance Of Dairy Cows By Feeding Birdsfoot Trefoil, Rachael G. Christensen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Condensed tannins (CT) are compounds that have shown potential to reduce the environmental impact of dairy farming waste products. In two live animal studies and a continuous culture study, it was hypothesized that feeding birdsfoot trefoil (Lotus corniculatus, BFT), a CT-containing legume, would improve nutrient utilization, milk, and component yield of dairy cows compared with feeding alfalfa hay or grass pasture in two studies, while feeding BFT forage would decrease methane production and improve rumen fermentation in addition to concentrate supplementation was the hypothesis of the third study. Reduction in milk urea nitrogen (MUN) and …

Groundwater And Surface Water Contributions To Metals Loading In Bayhorse Creek At The Abandoned Ramshorn Mine Site Near Bayhorse, Idaho, Hannah L. Mcdonough

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The U.S. Forest Service (USFS) and the Idaho Department of Environmental Quality (IDEQ) purchased property encompassing the abandoned Ramshorn mine to develop a state park. Because the abandoned copper-lead-silver mine was a potential hazard to the local creek and sediment, the IDEQ conducted several assessments to identify environmental risks. Between 2003 and 2006, the IDEQ completed a number of basic soil and water investigations in the location of mine waste. The IDEQ received investigation and cleanup funds through the EPA Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) program.

The USFS allocated $10,000 toward a two-year master’s level project to …

Effects Of Plant Stress On Facultative Apomixis In Boechera (Brassicaceae), Mayelyn Mateo De Arias

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In flowering plants, apomixis is asexual reproduction by seeds. Apomixis allows the production of offspring with the same genetic characteristics as the mother plant. Fertilization is not required. Apomixis could become a tool for naturally cloning high-yielding crop hybrids through their own seed. However, apomixis does not occur in major crop plants, except for citrus. In the present study, genes that might cause apomixis in naturally occurring apomictic plants were investigated. Sexual and apomictic species of the genus Boechera were exposed to stressed and non-stressed conditions. Effects of these treatments on the expression of apomixis was then measured. Stress triggered …

Factors Influencing Farmers' Utilization Of Auto-Guidance Technology In Northern Utah, Thomas A. Bleazard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Few studies have documented the use of auto-guidance technologies in the western United States. This study sought to discover farmers’ training preferences and what drives adoption of auto-guidance systems in northern Utah. A presentation of auto-guidance systems was made to crop school attendees. Afterwards an auto-guidance simulator was used to demonstrate to participants how these systems worked and let them engage in an experiential learning experience with laptops. A survey was administered to collect information on farmers’ training preferences and use of auto-guidance technologies. Results of the survey showed that farmers have a large interest in learning about auto-guidance technologies, …

Population And Community Dynamics Of Freshwater Decapods In Response To Ecological And Anthropogenic Factors In Subtropical Streams In The Caribbean, Omar Perez-Reyes

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Historically, cities were established in close proximity to the richest agricultural lands and freshwater resources. In tropical islands, urbanization occupies a large percentage of land use along streams and rivers and strongly affects the biota and habitat quality. I studied freshwater decapod population and community dynamics in tropical streams of Puerto Rico across human and elevational gradients. I found that: 1) streams with less urbanization had higher decapod species richness and population sizes than the highly urbanized streams; 2) changes in the food webs in the streams are the result of the influence of changes in land use and environmental …

Relationships Between Water Developments And Select Mammals On The U.S. Army Dugway Proving Ground, Utah, Bryan M. Kluever

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Water is essential to life. Three general forms of water exist: pre-formed water that is available in food, metabolic water that is created as a byproduct of life processes (e.g., metabolism of fat or breakdown of carbohydrates), and free water (i.e., water available for drinking). As humans settle arid environments, the addition of man-made free water sources (e.g., sewage ponds, catchment ponds) often occurs. In addition, a tool commonly used to increase the abundance or distribution of wildlife species in desert environments is the addition of water sources, usually specifically designed to benefit game species like bighorn sheep (Ovis …