Life Sciences Commons^™

Evolution Of Tidal Marsh Distribution Under Accelerating Sea Level Rise, Molly Mitchell, Julie Herman, Carl Hershner

VIMS Articles

Tidal marshes are important ecological systems that are responding to sea level rise-driven changes in tidal regimes. Human development along the coastline creates barriers to marsh migration, moderating tidal marsh distributions. This study shows that in the Chesapeake Bay, USA an estuarine system with geographic and development variability, overall estuarine tidal marshes are projected to decline by approximately half over the next century. Tidal freshwater and oligohaline habitats, which are found in the upper reaches of the estuary and are typically backed by high elevation shorelines are particularly vulnerable. Due to their geological setting, losses of large extents of tidal …

The Case Of The ‘Missing’ Arctic Bivalves And The Walrus: The Biggest [Overlooked] Clam Fishery On The Planet, Roger L. Mann, Eric N. Powell, Daphne M. Munroe

VIMS Articles

Bivalve molluscs represent a significant proportion of the diet of both Atlantic and Pacific walrus (Odobenus rosmarus rosmarus and Odobenus rosmarus divergens, respectively) and are pivotal to benthic–pelagic coupling and carbonate cycling in the Arctic oceans. The latter is of particular relevance in a period of seasonal ice retreat, freshwater release into associated surface waters, decreasing water pH, and possible undersaturation of Arctic waters with respect to aragonite. Using population estimates and predation rates for the walruses on bivalve molluscs, a conservative estimate of bivalve consumption in the regions of active walruses foraging is 2.0–3.0 3 106 tonnes y–1—a tonnage …

Not All Nitrogen Is Created Equal: Differential Effects Of Nitrate And Ammonium Enrichment In Coastal Wetlands, Jennifer L. Bowen, Anne E. Giblin, Anna E. Murphy, Ashley N. Bulseco, Linda A. Deegan, David S. Johnson, Et Al

VIMS Articles

Excess reactive nitrogen (N) flows from agricultural, suburban, and urban systems to coasts, where it causes eutrophication. Coastal wetlands take up some of this N, thereby ameliorating the impacts on nearshore waters. Although the consequences of N on coastal wetlands have been extensively studied, the effect of the specific form of N is not often considered. Both oxidized N forms (nitrate, NO3−) and reduced forms (ammonium, NH4⁺) can relieve nutrient limitation and increase primary production. However, unlike NH4⁺, NO3− can also be used as an electron acceptor for microbial respiration. We present results demonstrating that, in …

Long-Term Observations Of Pteropod Phenology Along The Western Antarctic Peninsula, Patrica S. Thibodeau, Deborah K. Steinberg, Colleen E. Mcbride, John A. Conroy, Hugh W. Ducklow

VIMS Articles

Shifts in phenology – annually occurring life history events – have been observed among many marine organisms due to global warming. We examined if phenological changes in the pteropod (pelagic snail) Limacina helicina antarctica have occurred along the Western Antarctic Peninsula, one of the most intensely warming regions on Earth, which would have important implications for regional food web dynamics. Pteropod shell diameters were analyzed from samples collected in the Palmer Antarctica Long-Term Ecological Research (PAL LTER) program year-round sediment trap from 2004 to 2018. There was considerable interannual variability in the time of appearance of a new pteropod cohort, …

Estimating Shifts In Phenology And Habitat Use Of Cobia In Chesapeake Bay Under Climate Change, Daniel P. Crear, Brian E. Watkins, Marjorie A.M. Friedrichs, Pierre St-Laurent, Kevin C. Weng

VIMS Articles

Cobia (Rachycentron canadum) is a large coastal pelagic fish species that represents an important fishery in many coastal Atlantic states of the U.S. They are heavily fished in Virginia when they migrate into Chesapeake Bay during the summer to spawn and feed. These coastal habitats have been subjected to warming and increased hypoxia which in turn could impact the timing of migration and the habitat suitability of Chesapeake Bay. With conditions expected to worsen, we project current and future habitat suitability of Chesapeake Bay for cobia and predict changes in their arrival and departure times as conditions shift. To do …

Climate Drives The Geography Of Marine Consumption By Changing Predator Communities, M. A. Whalen, R.D. B. Whippo, J. J. Stachowicz, (...), Paige G. Ross, Et Al

VIMS Articles

The global distribution of primary production and consumption by humans (fisheries) is well-documented, but we have no map linking the central ecological process of consumption within food webs to temperature and other ecological drivers. Using standardized assays that span 105° of latitude on four continents, we show that rates of bait consumption by generalist predators in shallow marine ecosystems are tightly linked to both temperature and the composition of consumer assemblages. Unexpectedly, rates of consumption peaked at midlatitudes (25 to 35°) in both Northern and Southern Hemispheres across both seagrass and unvegetated sediment habitats. This pattern contrasts with terrestrial systems, …

Challenges For Restoration Of Coastal Marine Ecosystems In The Anthropocene, Avigdor Abelson, Daniel Reed, Graham J. Edgar, Carter S. Smith, Gary A. Kendrick, R J. Orth, Et Al

VIMS Articles

Coastal marine ecosystems provide critical goods and services to humanity but many are experiencing rapid degradation. The need for effective restoration tools capable of promoting large-scale recovery of coastal ecosystems in the face of intensifying climatic stress has never been greater. We identify four major challenges for more effective implementation of coastal marine ecosystem restoration (MER): (1) development of effective, scalable restoration methods, (2) incorporation of innovative tools that promote climate adaptation, (3) integration of social and ecological restoration priorities, and (4) promotion of the perception and use of coastal MER as a scientifically credible management approach. Tackling these challenges …

Large Projected Population Loss Of A Salt Marsh Bivalve (Geukensia Demissa) From Sea Level Rise, Robert Isdell, Donna M. Bilkovic, Carlton Hershner

VIMS Articles

Salt marshes and their inhabitants are being displaced by climate change and human development along the coastline. One inhabitant, the ribbed mussel (Geukensia demissa), forms a mutualistic relationship with smooth cordgrass, Sporobolus alterniflorus, along the US Atlantic Coast. Ribbed mussels stabilize the marsh, remove particulate matter from the water column, and promote denitrification, thereby improving local water quality. To quantify the potential effects of SLR on ribbed mussel abundance and resulting impacts on water quality functions, we compared the current and projected future (2050) spatial distributions of ribbed mussels in Chesapeake Bay assuming an intermediate SLR for …

Seasonal And Annual Variation In The Extent Of Suitable Habitats For Forage Fishes In Chesapeake Bay, 2000-2016, Mary C. Fabrizio, Troy D. Tuckey, Aaron J. Bever, Michael L. Macwilliams

Reports

The sustained production of sufficient forage is critical to advancing ecosystem-based management in Chesapeake Bay. Yet factors that affect local abundances and habitat conditions necessary to support forage production remain largely unexplored. Here, we quantified suitable habitat in the Chesapeake Bay region for four key forage fishes: bay anchovy Anchoa mitchilli, juvenile spot Leiostomus xanthurus, juvenile weakfish Cynoscion regalis, and juvenile spotted hake Urophycis regia. We coupled information from 17 years of monthly fisheries surveys with hindcasts from a numerical model of dissolved oxygen (DO) conditions and a 3-D hydrodynamic model of the Bay that provided …

Disease Diagnostics And Potential Coinfections By Vibrio Coralliilyticus During An Ongoing Coral Disease Outbreak In Florida, Blake Ushijima, Julie L. Meyer, Sharon Thompson, Kelly Pitts, Michael F. Marusich, Jessica Tittl, Elizabeth Weatherup, Et Al

VIMS Articles

A deadly coral disease outbreak has been devastating the Florida Reef Tract since 2014. This disease, stony coral tissue loss disease (SCTLD), affects at least 22 coral species causing the progressive destruction of tissue. The etiological agents responsible for SCTLD are unidentified, but pathogenic bacteria are suspected. Virulence screens of 400 isolates identified four potentially pathogenic strains of Vibrio spp. subsequently identified as V. coralliilyticus. Strains of this species are known coral pathogens; however, cultures were unable to consistently elicit tissue loss, suggesting an opportunistic role. Using an improved immunoassay, the VcpA RapidTest, a toxic zinc-metalloprotease produced by …

Spatial Variations Of Phytoplankton Biomass Controlled By River Plume Dynamics Over The Lower Changjiang Estuary And Adjacent Shelf Based On High-Resolution Observations, Zhaoru Zhang, Meng Zhou, Et Al, Walker O. Smith Jr.

VIMS Articles

Phytoplankton biomass in estuarine and continental shelf regions are regulated and modified by physical processes, but these interactions have mostly been investigated at a scale of tens of kilometers, and the role of meso- to sub-mesoscale dynamical processes of freshwater plumes in regulating the spatial and temporal variations of algal biomass is largely unknown. To assess the importance of features at these scales, high-resolution (horizontal spacing < 1 km) cross-sectional profiles of hydrographic and biogeochemical variables were collected in the lower Changjiang Estuary and adjacent continental shelf with a towed, undulating vehicle equipped with sensors measuring fluorescence, turbidity and irradiance. Discrete stations were also occupied to allow for the characterization of nutrients. Multiple physical features at different scales regulated the spatial variation of phytoplankton biomass. Phytoplankton biomass was initialized by an improved irradiance field driven by reduced turbidity together with a rapid development of subsurface stratification at the main plume front (isohaline of 23) downstream from the turbidity maximum zone. Phytoplankton blooms did not occur until outcrops located within the main front that were characterized by surface convergence and downwelling, which contributed to large algal biomass by mass trapping and enhanced light penetration. Wave-like features were detected seaward of the main front, coinciding with deacceleration of currents, indicating that they are front-released internal waves that increase algal retention time. This study revealed the critical role of small-scale processes near the plume front in triggering phytoplankton blooms under the large-scale context of improved light conditions, coastal upwelling and nutrient additions from intruding oceanic waters.

The Power Struggle: Assessing Interacting Global Change Stressors Via Experimental Studies On Sharks, Ian A. Bouyoucos, Sue-Ann Watson, Serge Planes, Colin A. Simpfendorfer, Gail D. Schwieterman, Et Al

VIMS Articles

Ocean warming and acidification act concurrently on marine ectotherms with the potential for detrimental, synergistic effects; yet, effects of these stressors remain understudied in large predatory fishes, including sharks. We tested for behavioural and physiological responses of blacktip reef shark (Carcharhinus melanopterus) neonates to climate change relevant changes in temperature (28 and 31 °C) and carbon dioxide partial pressures (pCO₂; 650 and 1050 µatm) using a fully factorial design. Behavioural assays (lateralisation, activity level) were conducted upon 7–13 days of acclimation, and physiological assays (hypoxia tolerance, oxygen uptake rates, acid–base and haematological status) were …

Sensitivity Of A Shark Nursery Habitat To A Changing Climate, Daniel Crear, Robert Latour, Marjorie A.M. Friedrichs, Pierre St-Laurent, Kevin C. Weng

VIMS Articles

Nursery area habitats such as estuaries are vital for the success of many fish populations. Climate change is altering conditions in these areas, which can thus impact the availability of suitable nursery habitat. The sandbar shark Carcharhinus plumbeus uses Chesapeake Bay (USA) as a nursery habitat during the summer months from birth up to 10 yr of age. To assess the impacts of climate change on juvenile sandbar sharks, we developed a habitat model using longline data collected from a fishery-independent survey within Chesapeake Bay. With this model, we projected contemporary and future distributions of suitable habitat for juvenile sandbar …

Results For The 2020 Vims Industry Cooperative Surveys Of The Mid-Atlantic, Nantucket Lightship, Great South Channel, Closed Area I, And Closed Area Ii Resource Areas, Sally Roman, David B. Rudders

Reports

The Virginia Institute of Marine Science (VIMS) conducted high resolution sea scallop dredge surveys of the entire Mid-Atlantic (MAB), the Nantucket Lightship (NLCA), Great South Channel (GSC), Closed Area I (CAI), and Closed Area II (CAII) during July–September 2020. These surveys were funded by the Sea Scallop Research Set-Aside Program (RSA). Exploitable biomass for each survey is shown in Table 1 for each spatially explicit SAMS Area (Scallop Area Management Simulator). SAMS Areas represent management relevant spatial subunits of the resource and explicitly account for differences in recruitment, vital rates, and fishing effort in the forward projection of survey information. …

Restoration Of Seagrass Habitat Leads To Rapid Recovery Of Coastal Ecosystem Services, Robert J. Orth, Jonathan S. Lefcheck, Karen S. Mcglathery, Lillian Aoki, Mark Luckenbach, Kenneth A. Moore, Matthew P.J. Oreska, Richard A. Snyder, David J. Wilcox, Bo Lusk

VIMS Articles

There have been increasing attempts to reverse habitat degradation through active restoration, but few largescale successes are reported to guide these efforts. Here, we report outcomes from a unique and very successful seagrass restoration project: Since 1999, over 70 million seeds of a marine angiosperm, eelgrass (Zostera marina), have been broadcast into mid-western Atlantic coastal lagoons, leading to recovery of 3612 ha of seagrass. Well-developed meadows now foster productive and diverse animal communities, sequester substantial stocks of carbon and nitrogen, and have prompted a parallel restoration for bay scallops (Argopecten irradians). Restored ecosystem services are approaching historic levels, but we …

Salinity And Simulated Herbivory Influence Spartina Alterniflora Traits And Defense Strategy, Serina Sebilian Wittyngham

VIMS Articles

Sea level rise is expected to push saline waters into previously fresher regions of estuaries, and higher salinities may expose oligohaline marshes to invertebrate herbivores typically constrained by salinity. The smooth cordgrass, Spartina alterniflora (syn. Sporobolus alterniflorus), can defend itself against herbivores in polyhaline marshes, however it is not known if S. alterniflora’s defense varies along the mesohaline to oligohaline marsh gradient in estuaries. I found that S. alterniflora from a mesohaline marsh is better defended than plants from an oligohaline marsh, supporting the optimal defense theory. Higher salinity treatments lowered carbon content, C:N, and new stem biomass …

Effects Of Seawater Exchange On Water Chemistry Among Coastal Lakes With Intermittent Connections To The Sea, A. Challen Hyman, Dana Bigham Stephens

VIMS Articles

Intermittently closed and open lakes and lagoons (ICOLLs) are a dynamic class of coastal waterbodies with the unique feature of intermittently connecting to the sea. Understanding the functioning and potential threats of these globally rare systems is important to their preservation and protection. Coastal dune lakes of northwest Florida are one example of an understudied group of ICOLLs which connect with the Gulf of Mexico for brief periods of time. Using a 17-year, monthly water chemistry dataset, we analyzed long-term patterns in water chemistry among 16 coastal dune lakes. Using salinity as a proxy for frequency of seawater inflows, principal …

The Effects Of Elevated Potassium, Acidosis, Reduced Oxygen Levels, And Temperature On The Functional Properties Of Isolated Myocardium From Three Elasmobranch Fishes: Clearnose Skate (Rostroraja Eglanteria), Smooth Dogfish (Mustelus Canis), And Sandbar Shark (Carcharhinus Plumbeus) - Associated Data, Gail D. Schwieterman, Maggie M. Winchester, Holly A. Shiels, Peter G. Bushnell, Diego Bernal, Heather M. Marshall, Richard W. Brill

Data

These data were collected following methods described in Schwieterman et al. (2020).

Identifying Important Juvenile Dusky Shark Habitat In The Northwest Atlantic Ocean Using Acoustic Telemetry And Spatial Modeling, Charles W. Bangley, Tobey H. Curtis, David H. Secor, Robert J. Latour, Matthew B. Ogburn

VIMS Articles

Highly mobile species can be challenging for fisheries management and conservation due to large home ranges combined with dependence on discrete habitat areas where they can be easily targeted or vulnerable to anthropogenic disturbances. Management of the Dusky Shark Carcharhinus obscurus in the northwest Atlantic Ocean has been particularly challenging due to the species' inherent vulnerability to overfishing and poorly understood habitat associations. To better understand habitat associations and seasonal distributions, we combined telemetry and remotely sensed environmental data to spatially model juvenile Dusky Shark presence probability in the northwest Atlantic Ocean. To accomplish this, 22 juvenile Dusky Sharks (107-220 …

Linking Monitoring And Data Analysis To Predictions And Decisions For The Range-Wide Eastern Black Rail Status Assessment, Conor P. Mcgowan, Nicole F. Angeli, Whitney A. Beisler, Et Al., F. M. Smith, B. D. Watts

Arts & Sciences Articles

The US Fish and Wildlife Service (USFWS) has initiated a re-envisioned approach for providing decision makers with the best available science and synthesis of that information, called the Species Status Assessment (SSA), for endangered species decision making. The SSA report is a descriptive document that provides decision makers with an assessment of the current and pre - dicted future status of a species. These analyses support all manner of decisions under the US Endangered Species Act, such as listing, reclassification, and recovery planning. Novel scientific analysis and predictive modeling in SSAs could be an important part of rooting conservation decisions …

Trace Metal Availability Affects Greenhouse Gas Emissions And Microbial Functional Group Abundance In Freshwater Wetland Sediments, George Giannopoulos, Katherine R. Hartop, Bonnie L. Brown, Bongkeun Song, Lars Elsgaard, Rima B. Franklin

VIMS Articles

We investigated the effects of trace metal additions on microbial nitrogen (N) and carbon (C) cycling using freshwater wetland sediment microcosms amended with micromolar concentrations of copper (Cu), molybdenum (Mo), iron (Fe), and all combinations thereof. In addition to monitoring inorganic N transformations (NO₃^–, NO₂^–, N₂O, NH₄⁺) and carbon mineralization (CO₂, CH₄), we tracked changes in functional gene abundance associated with denitrification (nirS, nirK, nosZ), dissimilatory nitrate reduction to ammonium (DNRA; nrfA), and methanogenesis (mcrA). With regards to …

Evaluating Recruitment Of American Eel, Anguilla Rostrata, In The Potomac River (Spring 2020), Troy D. Tuckey, Mary C. Fabrizio

Reports

American Eel (Anguilla rostrata) is a valuable commercial species along the Atlantic coast of North America from New Brunswick to Florida. Landings from Chesapeake Bay typically represent 60% of the annual United States commercial harvest (ASMFC 2012). American Eel is also important to the recreational fishery as it is often used live as bait for Striped Bass (Morone saxatilis) and Cobia (Rachycentron canadum). In 2016, Chesapeake Bay commercial landings of American Eel (728,717 lbs) were 78% of the U.S. landings (personal communication from the National Marine Fisheries Service, Fisheries Statistics Division). Since the 1980s, harvest along the U.S. Atlantic Coast …

The Effect Of Fertilization On Biomass And Metabolism In North Carolina Salt Marshes: Modulated By Location-Specific Factors, K. M. Czapla, I. C. Anderson, C. A. Currin

VIMS Articles

The resilience of salt marshes to sea level rise depends on vertical accretion through belowground biomass production and sediment deposition to maintain elevation above sea level. Increased nitrogen (N) availability from anthropogenic sources may stimulate aboveground biomass production and sediment deposition and, thus, accretion; however, increased N may also negatively impact marsh accretion by decreasing belowground biomass and increasing net CO₂ emissions. A study was conducted in Spartina alterniflora‐dominated salt marshes in North Carolina, USA, to determine how responses to fertilization vary across locations with different physical and chemical characteristics. Pore water residence time, inundation time, and proximity …

Virginia Peregrine Falcon Monitoring And Management Program: Year 2020 Report, B. D. Watts, M. U. Watts

CCB Technical Reports

The peregrine falcon (Falco peregrinus) was believed to be extirpated as a breeding species in Virginia by the early 1960s. An aggressive restoration program was initiated in 1978 that included the release of 115 captive-reared birds on the Coastal Plain (1978-1985) and 127 birds in the mountains (1985-1993). This program resulted in the first breeding of the modern era in 1982. Since this time, the population has proceeded through a rapid establishment phase followed by a consolidation phase. However, more than 95% of all breeding activity over the past 30 years has occurred on the Coastal Plain with very limited …

Spillover Of Sea Scallops From Rotational Closures In The Mid-Atlantic Bight (United States), Deborah R. Hart, Daphne M. Munroe, Joseph C. Caracappa, Dale Haidvogel, Burton V. Shank, David Rudders, Et Al

VIMS Articles

We examined evidence for larval spillover (increased recruitment outside the closures) of Atlantic sea scallops (Placopecten magellanicus) due to rotational closures in the Mid-Atlantic Bight using a 40-year fisheries survey time series and a larval transport model. Since the first closure of the Hudson Canyon South (HCS) area in 1998, mean recruitment in the two areas directly down-current from this closure, Elephant Trunk (ET) and Delmarva (DMV), increased significantly by factors of about 7 and 2, respectively. Stock–recruit plots indicate that low biomasses in HCS were associated with reduced mean recruitment in ET and DMV. Simulations indicate that …

Net Ecosystem Carbon Balance In A North Carolina, Usa, Salt Marsh, K. M. Czapla, Iris C. Anderson, C. A. Currin

VIMS Articles

Salt marshes have among the highest carbon (C) burial rates of any ecosystem and often rely on C accumulation to gain elevation and persist in locations with accelerating sea level rise. Net ecosystem carbon balance (NECB), the accumulation or loss of C resulting from vertical CO2 and CH4 gas fluxes, lateral C fluxes, and sediment C inputs, varies across salt marshes; thus, extrapolation of NECB to an entire marsh is challenging. Anthropogenic nitrogen (N) inputs to salt marshes impact NECB by influencing each component of NECB, but differences in the impacts of fertilization between edge and interior marsh must be …

Allostery In Oligomeric Receptor Models, Gregory D. Conradi Smith

Arts & Sciences Articles

We show how equilibrium binding curves of receptor homodimers can be expressed as rational polynomial functions of the equilibrium binding curves of the constituent monomers, without approximation and without assuming independence of receptor monomers. Using a distinguished spanning tree construction for reduced graph powers, the method properly accounts for thermodynamic constraints and allosteric interactions between receptor monomers (i.e. conformational coupling). The method is completely general; it begins with an arbitrary undirected graph representing the topology of a monomer state-transition diagram and ends with an algebraic expression for the equilibrium binding curve of a receptor oligomer composed of two or more …

Virginia Wild-Caught Blue Catfish: Nutrition And Contaminant Analysis, Robert A. Fisher

Reports

The blue catfish, Ictalurus furcatus, is an introduced freshwater species in Virginia’s tributaries to the Chesapeake Bay. Since its introduction in the 1970’s, significant recreational and commercial fisheries have developed within upriver, largely freshwater environments. Blue catfish are voracious, opportunistic predators, feeding on a variety of natural prey items, including native fish and shellfish species. Their varied diets result in a more nutrient-rich fish compared to farmraised catfish (USDA Food and Nutrient Database https://fdc.nal.usda.gov/fdc-app. html#/?query=catfish) on the market, which are typically fed a plant-based diet.

In recent years, blue catfish populations have expanded from upriver freshwater habitat to major brackish-water …

Dihydrodinophysistoxin-1 Produced By Dinophysis Norvegica In The Gulf Of Maine, Usa And Its Accumulation In Shellfish, Jonathan R. Deeds, Whitney L. Stutts, Mary Dawn Celiz, Jill Macleod, Amy E. Hamilton, Bryant J. Lewis, David W. Miller, Kohl Kanwit, Juliette L. Smith, Et Al

VIMS Articles

Dihydrodinophysistoxin-1 (dihydro-DTX1, (M-H)⁻m/z 819.5), described previously from a marine sponge but never identified as to its biological source or described in shellfish, was detected in multiple species of commercial shellfish collected from the central coast of the Gulf of Maine, USA in 2016 and in 2018 during blooms of the dinoflagellate Dinophysis norvegica. Toxin screening by protein phosphatase inhibition (PPIA) first detected the presence of diarrhetic shellfish poisoning-like bioactivity; however, confirmatory analysis using liquid chromatography-tandem mass spectrometry (LC-MS/MS) failed to detect okadaic acid (OA, (M-H)⁻m/z 803.5), dinophysistoxin-1 (DTX1, (M-H)⁻m/z 817.5), or dinophysistoxin-2 (DTX2, (M-H) …

Improving Production Of The Eastern Oyster Crassostrea Virginica Through Coordination Of Genetic Improvement Programs, Research, And Technology Transfer Activities, Standish K. Allen Jr., Caird Rexroad Iii, Robert Rheault

VIMS Articles

The East Coast Shellfish Growers Association has been actively advocating for continued improvement of breeding infrastructure to support a vibrant and ecologically crucial industry. This white paper acknowledges these efforts and is meant to serve as a paradigm for oyster breeding on the East Coast. The vision is relatively straightforward; however, its execution—like most things—will be fraught with detail and inertia. Yet describing simply the idea without articulating some detail and potential roadblocks would be misleading. Instead, we present a picture of a breeding paradigm as it might play out across the entire range of a species. At this particular …