Life Sciences Commons^™

From Inbreeding To Admixture: How The Diverse Consequences Of Gene Flow Shape Evolutionary Dynamics And Population Viability, Amy L. Springer

All Graduate Theses and Dissertations, Fall 2023 to Present

When Homo sapiens traveled out of Africa and interbred with the Neanderthals of Europe, human genes spread into the Neanderthal population. Likewise, genes from Neanderthals spread into the human genome—genes humans still carry to this day. The process whereby genetic material from one population is spread to another is known as gene flow. Gene flow—or the absence thereof—can have critical consequences for a population’s health and survival. On one hand, if no gene flow occurs, mating among close relatives can lead to high levels of inbreeding. Inbreeding can have devastating consequences for the health of populations, in some cases even …

Understanding Climate Change Impacts And Adaptation Potentials At Utah Ski Resorts, Rachel Hager

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Increasing temperature and shifting precipitation regimes due to climate change are a significant threat to winter recreation. Some businesses such as high-elevation ski resorts are especially vulnerable to the impacts of climate change. However, ski resorts may be able mitigate the impacts of climate change by proactively implementing adaptation strategies. The overall goal of this study was to investigate the impact of climate change on Utah ski resorts, and to understand adaptation perception, barriers, and strategies for different resorts across the state.

To meet that goal, we used a mixed-methods approach including examining temperature shifts at all Utah ski resorts …

Variation In Anuran Digit Lengths Between Microhabitats, Rylee Dalton

Student Research Symposium

Anuran species occupy a wide variety of microhabitats, including arboreal, semiarboreal, burrowing, aquatic, semi-aquatic, torrent, and terrestrial habitats. Previous research found relationships between pelvic and limb morphology and microhabitat in anurans, providing insight into how the anuran skeleton may have evolved in response to selection pressures associated with microhabitat. In this study, we analyze the relationship between anuran digit length and microhabitat to determine if and how digit length varies by microhabitat. We measured individual digit segments in over 250 species using microcomputed topography scanning and Meshlab. We used phylogenetic generalized least squares to test the relationship between digit segment …

Interspecific Differences In Stressor Tolerance Drive Community-Level Changes In A Small Aquatic Ecosystem, Jennifer M. Weathered

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The global human population is expected to reach 9.8 billion by 2050 and an increase in food yield will be needed to provide for the future generations. Insects are among the biggest threats to food production and are therefore the subject of intense chemical control through the application of pesticides. The ability of insects to evolve resistance to pesticides after repeated use has been documented. However, how evolved responses affect individuals’ behaviors, their interactions with others, and how these factors impact overall patterns in distribution remains relatively unexplored in the bromeliad.

The aquatic insect communities housed in water-holding tropical plants …

Remote Sensing Of Ploidy Level In Quaking Aspen (Populus Tremuloides Michx.), Benjamin Blonder, Bente J. Graae, Burke Greer, Marja Haagsma, Kenny Helsen, Rozália E. Kapás, Henry Pai, Jolanta Rieksta, Dillon Sapena, Christopher J. Still, Richard Strimbeck

Aspen Bibliography

1. Ploidy level in plants may influence ecological functioning, demography and response to climate change. However, measuring ploidy level typically requires intensive cell or molecular methods.
2. We map ploidy level variation in quaking aspen, a dominant North American tree species that can be diploid or triploid and that grows in spatially extensive clones. We identify the predictors and spatial scale of ploidy level variation using a combination of genetic and ground‐based and airborne remote sensing methods.
3. We show that ground‐based leaf spectra and airborne canopy spectra can both classify aspen by ploidy level with a precision‐recall harmonic mean of 0.75–0.95 and …

Climate Change Adaptation In The Delta Nile Region Of Egypt: Implications For Agricultural Extension, Hazem S. Kassem, Abdel Raouf Suleiman Bello, Bader M. Alotaibi, Fahd O. Aldosri, Gary S. Straquadine

Extension Research

This study used quantitative and qualitative methods to collect data, using questionnaires and interviews, from 792 randomly-selected farmers in two of the governorates in the Nile Delta Region, Egypt. A workshop was organized for 59 extension professionals working in the two governorates, looking at how the adaptive capacity of the agricultural sector towards climate change was being guided by policy-makers. Two focus groups were used: one with senior officials from the regional governorates and the other with central government administrators from the Ministry of Agriculture and Land Reclamation. The study findings suggested that 51.9% of the investigated farmers at the …

Role Of Nucleotide Identity In Effective Crispr Target Escape Mutations, Tim Künne, Yifan Zhu, Fausia Da Silva, Nico Konstantinides, Rebecca E. Mckenzie, Ryan N. Jackson, Stan J.J. Brouns

Chemistry and Biochemistry Faculty Publications

Prokaryotes use primed CRISPR adaptation to update their memory bank of spacers against invading genetic elements that have escaped CRISPR interference through mutations in their protospacer target site. We previously observed a trend that nucleotide-dependent mismatches between crRNA and the protospacer strongly influence the efficiency of primed CRISPR adaptation. Here we show that guanine-substitutions in the target strand of the protospacer are highly detrimental to CRISPR interference and interference-dependent priming, while cytosine-substitutions are more readily tolerated. Furthermore, we show that this effect is based on strongly decreased binding affinity of the effector complex Cascade for guanine-mismatched targets, while cytosine-mismatched targets …

Selecting Trees For High Elevations, Michael R. Kuhns, Megan Dettenmaier

All Current Publications

This fact sheet describes the importance of careful species selection when planning and planting cultivated landscapes in unique, high elevation conditions in Utah. We recommend native and non-native tree species that can stand the stresses of living above 5,000 feet.

Salt And The Rough-Skinned Newt (Taricha Granulosa): Evolutionary Investigations Of Local Adaptation To An Anthropogenic And Natural Stressor, Gareth Rowland Hopkins

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Amphibians are osmotically-challenged due to their highly permeable skin and egg membranes. As such, biologists have mostly ignored their occurrence in saline habitats. The goal of this dissertation was to investigate the ability of amphibians to adapt to inhabit these osmotically-stressful environments. As freshwater resources are increasingly salinized due to a combination of anthropogenic and natural stressors, including road-deicing salt application, coastal storm events, and sea-level rise, it is important to understand the abilities and constraints of sensitive organisms, like amphibians, to persist in these environments. I began by exploring what is known about amphibians inhabiting saline habitats around the …

Cognitive And Psychomotor Responses To High-Altitude Exposure In Sea Level And High-Altitude Residents Of Ecuador, John E. Davis, Dale R. Wagner, Nathan Garvin, David Moilanen, Jessica Thorington, Cory Schall

Kinesiology and Health Science Faculty Publications

Background High-altitude inhabitants have cardiovascular and respiratory adaptations that are advantageous for high-altitude living, but they may have impaired cognitive function. This study evaluated the influence of altitude of residence on cognitive and psychomotor function upon acute exposure to very high altitude. Findings Ecuadorians (31 residing at 0–1,500 m [LOW], 78 from 1,501–3,000 m [MOD], and 23 living >3,000 m [HIGH]) were tested upon their arrival to a hut at 4,860 m on Mount Chimborazo. Cognitive/psychomotor measurements included a go-no-go test (responding to a non-visual stimulus), a verbal fluency test (verbalizing a series of words specific to a particular category), …

Analysis Of The Lactobacilluscasei Supragenome And Its Influence In Species Evolution And Lifestyle Adaptation, Jeff Broadbent, E. C. Neeno-Eckwall, B. Stahl, K. Tandee, H. Cai, W. Morovic, P. Horvath, J. Heidenreich, N. T. Perna, R. Barrangou, J. L. Steele

Nutrition, Dietetics, and Food Sciences Faculty Publications

The broad ecological distribution of L. casei makes it an insightful subject for research on genome evolution and lifestyle adaptation. To explore evolutionary mechanisms that determine genomic diversity of L. casei, we performed comparative analysis of 17 L. casei genomes representing strains collected from dairy, plant, and human sources. Results Differences in L. casei genome inventory revealed an open pan-genome comprised of 1,715 core and 4,220 accessory genes. Extrapolation of pan-genome data indicates L. casei has a supragenome approximately 3.2 times larger than the average genome of individual strains. Evidence suggests horizontal gene transfer from other bacterial species, particularly lactobacilli, …

Evolutionary Genetics Of Tetrodotoxin (Ttx) Resistance In Snakes: Tracking A Feeding Adaptation From Populations Through Clades, Chris R. Feldman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Understanding the nature of adaptive evolution has been the recent focus of research detailing the genetic basis of adaptation and theoretical work describing the mechanics of adaptive evolution. Nevertheless, key questions regarding the process of adaptive evolution remain. Ultimately, a detailed description of the ecological context, evolutionary history, and genetic basis of adaptations is required to advance our understanding of adaptive evolution. To address some of the contemporary issues surrounding adaptive evolution, I examine phenotypic and genotypic changes in a snake feeding adaptation.

Adaptations can arise through fixation of novel mutations or recruitment of existing variation. Some populations of the …

Learning About Foods And Locations, Behave

All Current Publications

This publication discusses the different ways that animals learn and adapt by being in different places and experiencing different things.

Quantitative Analysis Of Occlusal Microwear In Australopithecus And Paranthropus, Frederick E. Grine

Scanning Microscopy

Quantitative analysis of microwear features preserved on the occlusal surfaces of the M²s of southern African specimens of Australopithecus and Paranthropus (the so-called 'gracile' and 'robust' australopithecines) reveals that there is no striking relationship in either taxon between occlusal facet inclination and the incidence of wear features. Within each taxon, Phase I and Phase II facets tend to differ in a similar manner in the total number of wear features, the percentage frequency of pitting, and in the orientation of wear scratches. Nevertheless, Paranthropus molars tend to display significantly greater numbers of microwear features on both Phase I …