Life Sciences Commons^™

Dna Barcoding Of Springsnails (Mollusca, Gastropoda, Caenogastropoda) Endemic To The Trans-Pecos Region Of Texas (Usa), Kathryn E. Perez, Vanessa Saenz, Natalia Salazar-Lozano, Benjamin F. Schwartz, Benjamin T. Hutchins

Biology Faculty Publications and Presentations

---

In desert environments, unique communities depend on groundwater from springs, including a diverse radiation of small (<5 >mm) snails found in the desert across the southwestern United States. Nearly all springsnail species are considered critically imperiled with their existence depending on maintenance of spring-flows in regions of declining water availability. Extant, endemic springsnails in the Trans-Pecos region of Texas include one species of Pseudotryonia Hershler, 2001, five nominal Tryonia W. Stimpson, 1865 (Cochliopidae) and seven Pyrgulopsis Call & Pilsbry, 1886 (Hydrobiidae). Four of these are classified as endangered under the US Endangered Species Act. Surveys for springsnails were conducted at …

---

Applications Of Environmental Dna (Edna) To Detect Subterranean And Aquatic Invasive Species: A Critical Review On The Challenges And Limitations Of Edna Metabarcoding, Sakib Tahmid Rishan, Richard J. Kline, Md Saydur Rahman

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

---

The world is struggling to solve a devastating biodiversity loss that not only affects the extinction of treasured species and irreplaceable genetic variation, but also jeopardizes the food production, health, and safety of people. All initiatives aimed to conserve biodiversity rely heavily on the monitoring of both species and populations to get accurate spatial patterns and overall population assessments. Conventional monitoring techniques, such as visual surveys and counting individuals, are problematic due to challenges in identifying cryptic species or immature life stages. Environmental DNA (eDNA) is a relatively new technology that has the potential to be a faster, non-invasive, and …

---

Population Density And Reproductive Seasonality Of Tryonia Cheatumi (Gastropoda: Cochliopidae), The Phantom Tryonia, Kathryn E. Perez, Nina Noreika, Chad Norris, Marty Kelly, Melissa Lopez, Christina Ortega, Salma Ruiz Sandoval, Samantha Gonzalez, Weston Nowlin

Biology Faculty Publications and Presentations

---

We studied population density, population size, and reproductive seasonality of the Phantom Tryonia, Tryonia cheatumi (Pilsbry, 1935). This endangered freshwater snail is found only in the San Solomon Spring system, a cienega, or karst-based, arid-land freshwater spring system, in western Texas, USA. We sampled populations at seven locations in the system seasonally over a 2-yr period. San Solomon Spring, the system's largest spring and modified into a swimming pool, had the largest population of T. cheatumi, with an estimated 49 million individuals and a mean density as high as 23,626 ± 39,030 (individuals/m2 ± SD). There were seasonal differences …

---

Defining The Current Distribution Of The Imperiled Black-Spotted Newt Across South Texas, Usa, Padraic S. Robinson, Drew R. Davis, Sean M. Collins, Richard J. Kline

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

---

The Black-spotted Newt (Notophthalmus meridionalis) is a chronically understudied salamander species, with many aspects of its natural history, ecology, and distribution poorly known. Previous studies using traditional methodologies have had limited success documenting N. meridionalis on the landscape, detecting individuals at 6% (7 of 114) and 1% (2 of 221) of sites surveyed. A novel environmental DNA (eDNA) assay was designed and implemented with the goals of assessing the current distribution of N. meridionalis across south Texas, USA, and better understanding the conditions for positive eDNA detections. We conducted eDNA sampling and traditional surveys at 80 sites throughout …

---

Effects Of Patch Size, Fragmentation, And Invasive Species On Plant And Lepidoptera Communities In Southern Texas, James A. Stilley, Christopher A. Gabler

Biology Faculty Publications and Presentations

---

Simple Summary

Human land use has removed habitats, separated habitats into small and disconnected fragments, and introduced foreign species, which all harm wildlife. South Texas is highly diverse and home to many endangered species, but human disturbance threatens its wildlife. In south Texas, we poorly understand how different aspects of human land use influence wildlife diversity and abundance. We studied this by surveying plants and butterflies in 24 habitat fragments in south Texas that differed in size, shape, type, and land use history. Human disturbance was extensive, and foreign and weedy species were dominant in most habitats. Habitat types had …

---

Status, Distribution, And Conservation Of The Black-Spotted Newt (Notophthalmus Meridionalis) In South Texas, Padraic S. Robinson

Theses and Dissertations

---

The Black-spotted Newt (Notophthalmus meridionalis) is a chronically understudied species, with much information on the natural history, ecology, and distribution of this species poorly known. Previous studies using traditional methodologies have had limited success detecting N. meridionalis. A novel eDNA assay was designed and implemented with the goal of better understanding N. meridionalis distribution in south Texas. Primers were designed to amplify N. meridionalis DNA and tested against DNA from sympatric amphibians. This assay combined with traditional methods was implemented at 62 sites throughout south Texas, and N. meridionalis was detected at eight localities. At each site …

---

Environmental Drivers Of Mesophotic Echinoderm Assemblages Of The Southeastern Pacific Ocean, Ariadna Mecho, Boris Dewitte, Javier Sellanes, Simon Van Gennip, Erin E. Easton, Joao B. Gusmao

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

---

Mesophotic ecosystems (50–400 m depth) of the southeastern Pacific have rarely been studied because of the logistical challenges in sampling across this remote zone. This study assessed how oxygen concentrations and other environmental predictors explain variation in echinoderm assemblages at these mesophotic systems, where this group is among the predominant fauna. We compiled data on echinoderm taxa at 91 sampling stations, from historical and recent surveys (between 1950 and 2019), covering a longitudinal gradient of approximately 3,700 km along with the Nazca, Salas y Gómez, and Juan Fernández ridges. Uni- and multivariate model-based tools were applied to analyze the patterns …

---

Rivfishtime: A Global Database Of Fish Time-Series As A Currency For Global Change Ecology Research In Riverine Systems, Lise Comte, Juan Carvajal-Quintero, Pablo A. Tedesco, Ulrich Brose, Tibor Erős, Ana F. Filipe, Marie-Josée Fortin, Katie Irving, Claire Jacquet, Christopher M. Taylor

Biology Faculty Publications and Presentations

---

Motivation

We compiled a global database of long-term riverine fish surveys from 46 regional and national monitoring programmes and from individual academic research efforts, with which numerous basic and applied questions in ecology and global change research can be explored. Such spatially and temporally extensive datasets have been lacking for freshwater systems in comparison to terrestrial ones.

Main types of variables contained

The database includes 11,386 time-series of riverine fish community catch data, including 646,270 species-specific abundance records, together with metadata related to the geographical location and sampling methodology of each time-series.

Spatial location and grain

The database contains 11,072 …

---

Potential Effects Of Climate Change On The Geographic Distribution Of The Endangered Plant Species Manihot Walkerae, Gisel Garza, Armida Rivera, Crystian Sadel Venegas Barrera, Jose Guadalupe Martinez-Avalos, Jon Dale, Teresa Patricia Feria-Arroyo

Biology Faculty Publications and Presentations

---

Walker’s Manihot, Manihot walkerae, is an endangered plant that is endemic to the Tamaulipan thornscrub ecoregion of extreme southern Texas and northeastern Mexico. M. walkerae populations are highly fragmented and are found on both protected public lands and private property. Habitat loss and competition by invasive species are the most detrimental threats for M. walkerae; however, the effect of climate change on M. walkerae’s geographic distribution remains unexplored and could result in further range restrictions. Our objectives are to evaluate the potential effects of climate change on the distribution of M. walkerae and assess the usefulness of natural protected areas …

---

Expanding The Known Ranges Of The Phreatic Snails (Mollusca, Gastropoda, Cochliopidae) Of Texas, Usa, Dominique Alvear, Peter H. Diaz, J. Randy Gibson, Benjamin T. Hutchins, Benjamin Schwartz, Kathryn E. Perez

Biology Faculty Publications and Presentations

---

The Edwards-Trinity Aquifer System of Texas, USA, one of the world’s most ecologically diverse groundwater systems, contains 14 species (across seven genera) of small, poorly studied freshwater snails. Their underground habitat and microscopic size make them difficult to study and identify. Most published records are from original species descriptions, and some have not been seen since they were described more than 100 years ago. Here we use ~150 new collections, including spring and hyporheic zone sampling from across the Texas portions of the Edwards-Trinity Aquifer System, to update the ranges of these species. Two species were very uncommon, if encountered …

---

Mesohabitat Associations Of The Devil Tryonia, Tryonia Diaboli (Gastropoda: Truncatelloidea: Cochliopidae), Peter H. Diaz, Dominique Alvear, Kathryn E. Perez

Biology Faculty Publications and Presentations

---

The Cochliopidae of Texas include both stygobitic species, those that occupy only underground habitats, and epigean species, those living only in aboveground habitats. The devil tryonia, Tryonia diaboli, was described from the Devils River of Texas from river wrack, without additional habitat information. This species has been largely ignored since its description, so details of its habitat and ecology are obscure. In Dolan Springs and Finegan Springs, flowing into the Devils River, we sampled macroinvertebrates at five sites that form a gradient from the aquifer to the mainstem Devils River. We found the highest abundances of T. diaboli in aquifer …

---

Mitochondrial Genomes And Genetic Structure Of The Kemp's Ridley Sea Turtle (Lepidochelys Kempii), Hilary R. Frandsen, Diego F. Figueroa, Jeff A. George

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

---

The Kemp's ridley (Lepidochelys kempii) is the world's most endangered sea turtle species and is primarily distributed in the Gulf of Mexico. In the United States, South Padre Island, Texas serves as a key nesting ground for the species. Genetic studies of the Kemp's ridley have been used to aid in conservation and management practices, with the mitochondrial control region as the most commonly used marker due to its perceived hypervariability and ease of sequencing. However, with the advent of next generation sequencing technology, targeting complete mitochondrial genomes is now feasible. Here, we describe a more complete mitochondrial genome for …

---

Non-Invasive Methods For Measuring And Monitoring Stress Physiology In Imperiled Amphibians, Edward J. Narayan, Zachery R. Forsburg, Drew R. Davis, Caitlin R. Gabor

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

---

Global climate change is negatively impacting global biodiversity and ectothermic vertebrates, with amphibians being the most imperiled vertebrate taxa. Increased mean global atmospheric temperatures, high rates of habitat degradation, and exposure to infectious diseases, such as chytridiomycosis, have contributed to population declines and extinctions of rare and endangered amphibian species. Field-based monitoring of physiological endocrine traits can help determine the sub-lethal effects of environmental stressors and provide early alerts when populations are chronically stressed. Recent advances in amphibian stress endocrinology include the development and use of non-invasive methods to quantify the glucocorticoid, or stress biomarker, corticosterone. Non-invasive methods, such as …

---

Spatial And Seasonal Differences In The Top Predators Of Easter Island: Essential Data For Implementing The New Rapa Nui Multiple‐Uses Marine Protected Area, Naiti A. Morales, Erin E. Easton, Alan M. Friedlander, Euan S. Harvey, Rodrigo Garcia, Carlos F. Gaymer

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

---

1. Reef fishes are an important component of marine biodiversity, and changes in the composition of the assemblage structure may indicate ecological, climatic, or anthropogenic disturbances. To examine spatial differences in the reef fish assemblage structure around Easter Island, eight sites were sampled during autumn and summer 2016–2017 with baited remote underwater video systems.
2. To determine seasonal changes, quarterly (seasonal) sampling was conducted at five of those eight sites. Fifteen pelagic species of fishes were recorded during this study, some of which have not previously been recorded in scuba surveys, including the Galapagos shark (Carcharhinus galapagensis, Snodgrass & Heller, …

---

Invasive Aquatic Pets: Failed Policies Increase Risks Of Harmful Invasions, Jiří Patoka, André Lincoln Barroso Magalhães, Antonín Kouba, Zen Faulkes, Rikho Jerikho, Jean Ricardo Simões Vitule

Biology Faculty Publications and Presentations

---

Businesses in the pet trade collect and transport many aquatic species around the globe, and some of these individuals are released into new habitats. Some jurisdictions have introduced laws intended to regulate this trade, but these regulations have rarely had the desired effects. Laws regarding pets and the pet trade are often poorly communicated, poorly enforced, and not aligned with hobbyists’ beliefs. Consequently, some laws may increase the number of unwanted introductions instead of decreasing them. A significant change in approach is needed, involving far greater communication with scientists, administrations, politicians, the pet industry, and pet owners, promoting euthanasia of …

---

Foraging Patterns And Population Density Of The Buff-Bellied Hummingbird (Amazilia Yucatanensis) In Hidalgo County, Tx, Megan I. Villarreal

Theses and Dissertations

---

The objective of this investigation was to examine the foraging patterns and population density of the Buff-bellied Hummingbird (Amazilia yucatanensis ) in Hidalgo County, TX. Previous studies showed that hummingbirds use flowers displaying traditional bird pollination (ornithophilous) characteristics: reddish coloration, tubular corolla, and extended anthers. Observation sessions noted type and frequency of flowering species utilized for nectar, characteristics, and number of individuals seen in each area. Amazilia yucatanensis showed higher use of ornithophilous flowers. Significant results found: f-ratio 5.45 > p-value (0.05) 3.24. Two highly utilized species showed the expected 20–40% sucrose content expected in ornithophilous flowers. Population density per …

---

A National Strategy For The Conservation Of Native Freshwater Mollusks, Megan Bradley, Robert S. Butler, Heidi L. Dunn, Catherine Gatenby, Patricia A. Morrison, Teresa J. Newton, Matthew Patterson, Kathryn E. Perez

Biology Faculty Publications and Presentations

---

In 1998, a strategy document outlining the most pressing issues facing the conservation of freshwater mussels was published (NNMCC 1998). Beginning in 2011, the Freshwater Mollusk Conservation Society began updating that strategy, including broadening the scope to include freshwater snails. Although both strategy documents contained 10 issues that were deemed priorities for mollusk conservation, the identity of these issues has changed. For example, some issues (e.g., controlling dreissenid mussels, technology to propagate and reintroduce mussels, techniques to translocate adult mussels) were identified in the 1998 strategy, but are less prominent in the revised strategy, due to changing priorities and progress …

---

Genetic Structure Of Faucet Snail, Bithynia Tentaculata Populations In North America, Based On Microsatellite Markers, Kathryn E. Perez, Rebecca L. Werren, Christopher A. Lynum, Levi A. Hartman, Gabor Majoros, Rebecca A. Cole

Biology Faculty Publications and Presentations

---

Bithynia tentaculata is believed to have been extirpated from North America during the last glacial maximum. It was reintroduced into North America via the Great Lakes basin in the 1800’s and has recently been expanding its geographic range. This snail serves as intermediate host for three trematodes that cause extensive recurring morbidity and mortality events in migratory water birds along the Mississippi River. Using twelve microsatellite loci for ~200 individual snails from 11populations in North America and Europe, we examined one of the three major geographic regions from which founding populations into the Great Lakes typically originate. Our data supports …

---

Avifauna Of The Mache Chindul Ecological Reserve, Northwest Ecuador, Luis Carrasco, Karl S. Berg, Jennifer Litz, Andrew Cook, Jordan Karubian

Biology Faculty Publications and Presentations

---

We report on the avifauna of the 120,000 ha Mache Chindul Ecological Reserve (REMACH), northwest Ecuador. The study area is located in a poorly studied transition zone between three major Neotropical biogeographic regions-the Chocó, Tumbesian, and Tropical Andes-each of which contains exceptional diversity and endemism in birds and other organisms. We collected data from 1998–99 and 2004–11 from the Bilsa Biological Station (a 3500 ha private reserve) and several farms, forest fragments, and communities distributed across the central portion of REMACH using observations (aural and visual), audio recordings, mist netting, point counts and photographs. We recorded 360 species of bird …

---

Observations Of Flotsam Entrapment In The Northern Diamond-Backed Watersnake (Nerodia R. Rhombifer), Jason Ortega, Frederic Zaidan

Biology Faculty Publications and Presentations

---

—Small areas of protected land may act as islands of suitable habitat surrounded by human development. Although these areas receive protection, we have observed one way that the surrounding human population can still endanger the welfare of its inhabitants. During our observations of the Northern Diamond-backed Watersnake (Nerodia r. rhombifer) in a semi-protected nature park surrounded by human development, we encountered 13 individuals entangled with flotsam. Of the 220 juvenile through adult snakes that we captured, 12 were encircled by various types of objects (e.g., finger cots; latex sheaths that cover a single digit, dental elastics, and plastic bottle neck …

---