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Full-Text Articles in Life Sciences

A Comparison Of The Low Mode And Monte Carlo Conformational Search Methods, Carol A. Parish, Rosina Lombardi, Kent Sinclair, Emelyn Smith, Alla Goldberg, Melissa Rappleye, Myrianne Dure Oct 2002

A Comparison Of The Low Mode And Monte Carlo Conformational Search Methods, Carol A. Parish, Rosina Lombardi, Kent Sinclair, Emelyn Smith, Alla Goldberg, Melissa Rappleye, Myrianne Dure

Chemistry Faculty Publications

The Low Mode (LM) and Monte Carlo (MC) conformational search methods were compared on three diverse molecular systems; (4R, 5S, 6S, 7R)-hexahydro-5,6-dihydroxy-1,3,4,7-tetrakis(phenylmethyl)-2H-1,3-diazapin-2-one (1), 2-methoxy-2-phenyl-2-triflouromethyl-N-α-methyl benzyl propanamide (2) and a trimeric 39-membered polyazamacrolide (3). We find that either method, or a combination of the methods, is equally efficient at searching the conformational space of the smaller molecular systems while a 50:50 hybrid of Low Mode and Monte Carlo is most efficient at searching the space of the larger molecular system.


The Tadpole Of Proceratophrys Avelinoi (Anura: Leptodactylidae), Rafael O. De Sá, José A. Langone Sep 2002

The Tadpole Of Proceratophrys Avelinoi (Anura: Leptodactylidae), Rafael O. De Sá, José A. Langone

Biology Faculty Publications

The genus Proceratoprhys is poorly known. It consists of 14 currently recognized species (Frost, 2000) of medium-sized frogs distributed from northeastern Argentina and Paraguay to southeast Amazonia (Rondonia State), eastern and southern Brazil Proceratophrys avelinoi was described from Misiones, Argentina (Mercadal de Barrio and Barrio, 1993). The larval stage of this species is unknown. Herein, we describe the tadpole and the characteristics of the internal oral anatomy of P. avelinoi using scanning electron microscopy (SEM).


The Tadpole Of Proceratophrys Avelinoi (Anura: Leptodactylidae), Rafael O. De Sá, José A. Langone Sep 2002

The Tadpole Of Proceratophrys Avelinoi (Anura: Leptodactylidae), Rafael O. De Sá, José A. Langone

Biology Faculty Publications

The genus Proceratoprhrys is poorly known. It consists of 14 currently recognized species (Frost, 2000) of medium-sized frogs distributed from northeastern Argentina and Paraguay to southeast Amazonia (Rondonia State), eastern and southern Brazil. Proceratophrys avelinoi was described from Misiones, Argentina (Mercadal de Barrio and Barrio, 1993). The larval stage of this species is unknown. Herein, we describe the tadpole and the characteristics of the internal oral anatomy of P avelinoi using scanning electron micros- copy (SEM).


A Mitochondrial Dna Phylogeny Of The Leptodactylus Fuscus Species-Complex (Leptodactylidae: Anura, Arley Camargo Aug 2002

A Mitochondrial Dna Phylogeny Of The Leptodactylus Fuscus Species-Complex (Leptodactylidae: Anura, Arley Camargo

Master's Theses

Leptodactylus fuscus is a broadly distributed frog species in the Neotropical region. Previous allozymic evidence supported the hypothesis of L. fuscus as a composite of several species. However, morphological and advertisement call data supported the hypothesis of a single-species taxon. These competing hypotheses were evaluated using cladistic analyses of mitochondrial DNA sequences. Fragments of 12S rRNA, 16S rRNA, and ND1 protein-coding genes from 17 populations were sequenced. Phylogenetic analyses were performed using: maximum parsimony, maximum likelihood, and Bayesian analysis. Data sets were analyzed separately and combined. Analyses of the combined data set show four exclusive clades of L. fuscus: …


Morphological Plasticity In The Tropical Sponge Anthosigmella Varians: Responses To Predators And Wave Energy., Malcolm Hill, April L. Hill Feb 2002

Morphological Plasticity In The Tropical Sponge Anthosigmella Varians: Responses To Predators And Wave Energy., Malcolm Hill, April L. Hill

Biology Faculty Publications

The goal of the research presented here was to examine phenotypic plasticity exhibited by three morphotypes of the common Caribbean sponge Anthosigmella varians (Duchassaing & Michelotti). We were interested in examining the biotic (and, to a lesser extent, abiotic) factors responsible for branch production in this species. We also tested the hypothesis that the skeleton may serve an antipredator function in this sponge, focusing on vertebrate fish predators (i.e., angelfish) in this work. In transplant and caging experiments, unprotected forma varians replicates were immediately consumed by angelfish, while caged replicates persisted on the reef for several months. These findings support …


Leptodactylus Silvanimbus, W. R. Heyer, Rafael O. De Sá, Sarah Muller Jan 2002

Leptodactylus Silvanimbus, W. R. Heyer, Rafael O. De Sá, Sarah Muller

Biology Faculty Publications

Adult Leptodactylus silvanimhus are of moderate sized, the head is about as wide as long, and the hind limbs are moderate in length (see Table; also see Heyer and Thompson 2000 for definitions of adult size and leg length categories for Leptodacrylus). The male vocal sac is single and internal. Male forearms are hypertrophied in larger individuals. Adult males have two black thumb spines on each hand and lack chest spines. Individuals lack dorsolateral folds. The toe tips are narrow, not expanded. Females have weakly developed lateral toe fringes and males either have lateral toe ridges or weakly developed fringes. …


Complement Resistance In Agrobacterium Tumefaciens Isolates, Michael E. Mccormick Jan 2002

Complement Resistance In Agrobacterium Tumefaciens Isolates, Michael E. Mccormick

Honors Theses

The word "pathogen" ofen brings to mind morose images and other words such as "illness," "malaria," and "outbreak": words associated with animal pathogens, in particular, the ones that make us humans sick. However, some pathogens also affect another major kingdom, plants, and one of the more devastating pathogens to the plant kingdom is the bacteria Agrobacterium tumefaciens. This organism has a Type IV Secretion System that allows it to transfer a piece of t-DNA into the host cell; this DNA integrates into the eukaryotic genome and establishes in ction by utilizing the host's transcription machinery. This unique and effective means …