Life Sciences Commons^™

Biomarkers In Borrelia Burgdorferi Infected Triple-Negative Breast Cancer Cells, Sambuddha Paul

Master's Theses

Triple-negative breast cancer (TNBC) is an aggressive subtype of breast cancer with limited treatment options and a poor prognosis. Although some studies have attempted to identify new biomarkers and therapies, only a few have shown promise in clinical trials. In the context of cancer development, infectious agents rank as the third major risk factor, contributing to approximately 15-20% of cancer cases, according to the American Cancer Society. Hence, the identification of biomarkers associated with infection-originated cancer is crucial for enhancing cancer prevention, early detection, diagnosis, and treatment. Borrelia burgdorferi, the causative agent of Lyme disease, has been linked to TNBC …

Rattus Norvegicus As A Biological Detector Of Clandestine Remains And The Use Of Ultrasonic Vocalizations As A Locating Mechanism, Gabrielle M. Johnston

Master's Theses

In investigations, locating missing persons and clandestine remains are imperative. One way that first responder and police agencies can search for the remains is by using cadaver dogs as biological detectors. Cadaver dogs are typically used due to their olfactory sensitivity and ability to detect low concentrations of volatile organic compounds produced by biological remains. Cadaver dogs are typically chosen for their stamina, agility, and olfactory sensitivity. However, what is not taken into account often is the size of the animal and the expense of maintaining and training the animal. Cadaver dogs are typically large breeds that cannot fit in …

Trace Dna Detection Using Diamond Dye: A Recovery Technique To Yield More Dna, Leah Davis

Master's Theses

This study aspires to find a new screening approach to trace DNA recovery techniques to yield a higher quantity of trace DNA from larger items of evidence. It takes the path of visualizing trace DNA on items of evidence with potential DNA so analysts can swab a more localized area rather than attempting to recover trace DNA through the general swabbing technique currently used for trace DNA recovery. The first and second parts consisted of observing trace DNA interaction with Diamond Dye on porous and non-porous surfaces.

The third part involved applying the Diamond Dye solution by spraying it onto …

Impacts Of Human Development And Salt Marsh Characteristics On Variation In The Growth And Reproduction Of Spartina Alterniflora, Alora Lovely

Honors Theses

This study focused on how human development may impact salt marshes using the common native species Spartina alterniflora as an indicator. Salt marshes are vital coastal ecosystems that help protect against major flooding and can filter pollutants from the water. Like many environments, salt marshes have been impacted by human development in many ways, from construction of cities and roadways to pollution from industrial facilities and equipment. The salt marshes that once dominated many coastlines along the North American Atlantic coast have been destroyed or reduced in size dramatically with the extensive development that has occurred along these shores. Three …

Assessment Of Virus-Induced Myocarditis In Human Heart Tissue Samples, Gabriel Galeotos

Honors Theses

The heart is a major organ whose function is to transport nutrients and waste throughout the body. This organ can become infected by pathogens, such as viruses, bacteria, or parasites. Infection of the middle heart layer, or myocardium, is often caused by a viral agent. This disease has three stages: viral infiltration, adaptive immune system activation, and finally either viral clearance or cardiac cell remodeling. During this process the immune system will begin to secrete cytokines, which are signaling molecules that alert other members of the immune pathways, and also participate in cardiac remodeling. Evaluating the correlation between the cytokine …

Studying The Behavioral Role Of The Kcnn2 Gene In Zebrafish Embryos, Gina Dragonette

Honors Theses

Introduction: Mutations in the KCNN2 gene have been linked to phenotypes of movement disorders and autism. The goal of this experiment was to use the CIUSPR-Cas9 system to create a deletion within the KCNN2 gene and to observe the effect on the expression of movement in zebra fish embryos.

Methods: Linearized Cas9 DNA and guide DNA underwent in vitm transcription (IVT) reactions to produce RNA to be injected into zebrafish embryos at the one cell stage. KCNN guide RNAs were produced for the KCNN2 and KCNN3 genes (to prevent KCNN3 protein function from compensating for loss ofKCNN2's protein function), and …

Evaluation Of The Effect Of The Humic Acid Inhibitor On Forensic Genetic Investigations Of Human Skeletal Remains, Madeline King

Honors Theses

Postmortem survival of DNA in human skeletal remains occurs due to the compact microstructure of the skeleton and its ability to provide a strong, protective physical barrier to environmental insults. On a molecular level, DNA preservation in bones/teeth involves electrostatic interactions between the negatively-charged DNA backbone and positively charged calcium residues in hydroxyapatite, the latter of which is one of the main components of bone microstructure. Despite these protections, over time endogenous DNA becomes damaged, limiting our ability to detect it and affecting its utility in making a positive identification. Hence, forensic genetic investigations of unidentified human remains (UHRs) are …

Extraction Of Human Dna From Soil In A Simulated Clandestine Grave, Arely Joaly Parra Lopez

Honors Theses

Locard’s Exchange Principle states that “every contact leaves a trace.” The same principle applies when a perpetrator of a homicide decides to bury a victim in a clandestine grave. If a perpetrator originally buried a murder victim in haste to prevent discovery and then decided to later move the victim’s body to a remote location for disposal, decomposition fluids from the victim’s body (which contain cellular material and therefore DNA) would remain in the surrounding grave soil at the original burial site. It is possible that investigators could: 1) prove that a human body had once laid in that location …

Effects Of Bacterial Metabolites In Conditioned Media On Colon Cancer Proliferation, Hunter Panier

Master's Theses

Cancer is the second leading cause of death in the United States with colorectal cancer (CRC) being the third most common type. Available treatments include a combination of surgery and chemotherapy but have debilitating side effects. These also have limited effectiveness in some cases, creating the need for additional treatment options, or supplementary treatments to increase their effectiveness. This is leading scientists to consider the microbiome to fix this shortcoming. Current research is focusing on the microbiome and its interactions with certain diseases, which could lead to pro- or prebiotic therapies. This work aims to establish specific bacterial species can …

Using Zebrafish As A Model System For Studying The Autism Risk Gene Adnp In Early Embryonic Development, William Theune

Master's Theses

Autism Spectrum Disorders (ASD) are a group of debilitating neurodevelopmental disorders, estimated to affect 1 in 54 children. Despite the identification of many autism-risk genes, the underlying mechanisms for ASD remain unclear. One of the most common forms of ASD is associated with de novo mutations in the ADNP gene (Activity-Dependent Neuroprotector Homeobox; accounting for 0.17% of ASD individuals). Termed ADNP syndrome, this disorder is characterized by intellectual disability, facial dysmorphia, and is comorbid with multiple organ system deficits. We set out to use zebrafish as a model organism to gain mechanistic insights into ADNP function. Zebrafish have the advantage …

Phenotypic Analysis Of S. Aureus Strains From University Student Health Centers And Environmental Controls, Antonio Teixeira

Honors Theses

Methicillin-resistant Staphylococcus aureus (MRSA) is a group of pathogenic bacterial strains resistant to a class of antibiotics that is a major cause for concern in health care systems. There is a lack of study in whether health care centers are reservoirs for these bacteria, especially within developed countries. Five environmental swab samples were collected from five different university health care centers across the region, and 16 swab samples from a general university environment. Any isolated bacterial strains collected underwent five biochemical tests (mannitol fermentation, DNase activity, oxidase activity, catalase activity, and coagulase activity) to preliminarily identify S. aureus bacteria. 24% …

Investigating The Efficacy Of Dna Damage With Bleach In Forensic Laboratories And At Crime Scenes, Alyssa Tuccinardi

Honors Theses

Household/commercial bleach (6% NaOCl, sodium hypochlorite) degrades DNA through oxidative damage, production of chlorinated base products, and cleavage of DNA strands (breaking it into smaller and smaller fragments). The presence of these lesions significantly impacts the ability to generate a full genetic profile from an evidentiary sample. In fact, knowledge of the damaging effect of bleach on DNA is the basis for its use in forensic laboratories to clean workbenches and prevent cross-contamination of samples between cases. Additionally, bleach is used intentionally by criminals to clean up crime scenes and destroy DNA evidence. A previous study demonstrated that bleach has …

The Effects Of Emotionally Appealing Messages On Perceptions About Marine Plastic Pollution: Implications For Science Communication On Social Media Outlets, Shelby Miller

Honors Theses

Marine plastic pollution (MPP) is one of the most pressing problems in the world today with many effects on ecological, economic, and social aspects of society. Global plastic production is around 322 million tons, with 10% of the world’s plastic products entering the ocean every year. Environmental campaigns use humor and shock in order to influence consumer behavior in regard to plastic products. Such approaches are important to utilize on social media in order to effectively communicate the issues posed by MPP. In this study, students and staff at the University of New Haven campus were given a survey containing …

Investigating The Role Of The 5’Utr Region Of Tmev In Viral Myocarditis, Maryam Alqahtani

Master's Theses

Viral myocarditis is described as the inflammation of the heart muscle, and it is a common condition that can affect the heart. It is estimated that myocarditis causes 1.5 million deaths annually. In mice, Theiler’s encephalomyelitis virus (TMEV) is a common cause of myocarditis. This non-attenuated virus can be used in a cell culture model system to study viral replication and persistence. These processes have been linked to the severity of the heart damage, which in most clinical scenarios, can lead to dilated cardiomyopathy. The 5’ untranslated region (5‘UTR) found in the viral genome of TMEV is well known to …

A Machine Learning Technology For Rapid Detection Of Carbon Nanotubes/Dna Hybridization In Biosensor Healthcare Applications, Steven K. Ang

Master's Theses

In molecular biology, the term “DNA hybridization” generally refers to the process of forming a double stranded nucleic acid from joining two complementary strands of DNA. The degree of genetic similarity of the DNA resulting from hybridization can be detected ei ther by using the chemical characteristics of DNA samples or by utilizing reliable biosensors which transform the chemical characteristics into a source of electrical measurements. In past research about such sensors, known as DNA Hybridization Detection Systems, the thermal and electrical characteristics of carbon nanotubes are utilized to detect whether hybridization takes place or not. However, human interpretation of …

Dna Methylation Methods For Donor Age Prediction Using Touch Dna, Emily Neverett

Master's Theses

The International Labor Organization (ILO) estimated over 30 million individuals fall victim to human trafficking each year, of which, 50% are children below the age of 16. In 2012, the ILO reported there to be 168 million child laborers worldwide, with many trafficked into hazardous conditions to manufacture consumer products that are sold in developed countries. This is a modern form of slavery with poor working conditions, no access to education, and low wages. The hidden nature of this crime, however, makes it extremely difficult to identify and locate victims of forced child labor, and thus making it challenging to …

Nekton Usage Of High Marsh Habitats In Connecticut Salt Marshes, With Emphasis On The Genus Fundulus, Amanda L. Tucker

Master's Theses

Large scale habitat use patterns of salt marsh nekton are fairly well understood, but small-scale patterns within marsh habitats are not as well known, including the genus Fundulus, an important salt marsh species. This is an area of study that needs more research, particularly in light of increases in salt marshes loss within the last several decades. Salt marshes are a primary habitat for Fundulus species. Sea level rise and urbanization have been major contributors to salt marsh loss and alteration.

Salt marshes are highly variable habitats both spatially and temporally due to tidal cycles, high and low marsh areas …

Assay Development For The Identification Of Species And Bioactive Compounds Of Morinda Citrifolia (Noni) In Dietary Supplements By Rt-Qpcr, Dna Sanger Sequencing And Spectroscopy (Uv-Vis/Ftir), Ricardo L. Fernandez Walker

Master's Theses

Regulation standards for dietary supplements lack greatly. Due to this, fraud during the manufacturing of these products might be committed. Previous investigations on herbal dietary supplements have shown that the main ingredient was not present in most of the herbal supplements tested and that these products also contained other substances not stated in the label The purpose of this study was to develop a fluorescent qPCR assay for the identification of Morinda citrifolia herbal species in dietary supplements. Primers for genetic regions rbcL and matK of M. citrifolia were designed. The potential of novel matK primer showed discrimination potential …

Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (Rdx) Reduction By Granular Zero-Valent Iron In Continuous Flow Reactor, Amalia Terracciano, Jie Ge, Agamemnon Koutsospyros, Xiaoguang Meng, Benjamin Smolinski, Per Arienti

Civil Engineering Faculty Publications

Wastewater streams containing hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine (RDX) are subject to regulatory discharge regulations that require processing through industrial waste treatment. Thus, the development of easy-to-apply technologies for the treatment of RDX-laden wastewater streams is imperative. In the present study, the reduction of RDX by granular zero valent iron (GZVI) in batch and column experiments was investigated. Preliminary batch tests conducted under both oxic and anoxic conditions showed that after 3.0 hours of reaction with GZVI, RDX was mainly converted to formaldehyde (CH₂O), nitrate (NO₃ ^- ), and ammonium (NH₄ ⁺ ). Column filtration tests …

Persistent Borrelia Infection In Patients With Ongoing Symptoms Of Lyme Disease, Marianne J. Middelveen, Eva Sapi, Jennie Burke, Katherine Filush, Agustin Franco, Melissa Fesler, Raphael B. Stricker

Biology and Environmental Science Faculty Publications

Introduction: Lyme disease is a tickborne illness that generates controversy among medical providers and researchers. One of the key topics of debate is the existence of persistent infection with the Lyme spirochete, Borrelia burgdorferi, in patients who have been treated with recommended doses of antibiotics yet remain symptomatic. Persistent spirochetal infection despite antibiotic therapy has recently been demonstrated in non-human primates. We present evidence of persistent Borrelia infection despite antibiotic therapy in patients with ongoing Lyme disease symptoms. Methods: In this pilot study, culture of body fluids and tissues was performed in a randomly selected group of 12 patients with …

Stabilization Of Lead (Pb) And Zinc (Zn) In Contaminated Rice Paddy Soil Using Starfish: A Preliminary Study, Deok Hyun Moon, Inseong Hwang, Agamemnon Koutsospyros, Kyung Hoon Cheong, Yong Sik Ok, Won Hyun Ji, Jeong Hun Park

Civil Engineering Faculty Publications

Lead (Pb) and zinc (Zn) contaminated rice paddy soil was stabilized using natural (NSF) and calcined starfish (CSF). Contaminated soil was treated with NSF in the range of 0-10 wt.% and CSF in the range of 0-5 wt.% and cured for 28 days. Toxicity characteristic leaching procedure (TCLP) test was used to evaluate effectiveness of starfish treatment. Scanning electron microscopy-energy dispersive X-ray spectroscopy (SEM-EDX) analyses were conducted to investigate the mechanism responsible for effective immobilization of Pb and Zn. Experimental results suggest that NSF and CSF treatments effectively immobilize Pb and Zn in treated rice paddy soil. TCLP levels for …

Antimicrobial Activity Of Bee Venom And Melittin Against Borrelia Burgdorferi, Kayla Socarras, Priyanka A. Theophilus, Jason Torres, Khusali Gupta, Eva Sapi

Biology and Environmental Science Faculty Publications

Lyme disease is a tick-borne, multi-systemic disease, caused by the bacterium Borrelia burgdorferi. Though antibiotics are used as a primary treatment, relapse often occurs after the discontinuation of antimicrobial agents. The reason for relapse remains unknown, however previous studies suggest the possible presence of antibiotic resistant Borrelia round bodies, persisters and attached biofilm forms. Thus, there is an urgent need to find antimicrobial agents suitable to eliminate all known forms of B. burgdorferi. In this study, natural antimicrobial agents such as Apis mellifera venom and a known component, melittin, were tested using SYBR Green I/PI, direct cell counting, biofilm …

Establishment Of Innovative Shared Departments To Advance Interdisciplinary Education, Ronald S. Harichandran, Brian Kench, Summer Mcgee, Michael A. Collura, Jean Nocito-Gobel, Charles David Skipton

Engineering and Applied Science Education Faculty Publications

More and more universities are pursuing interdisciplinary academic activities that span across department and college boundaries. Administrative structures to facilitate such programs are difficult to establish within traditional university frameworks consisting of disciplinary departments and colleges. Often interdisciplinary programs are housed in a traditional disciplinary department or college, or in a standalone center reporting to a college dean or the provost. The difficulty of these structures is obtaining broad buy-in from faculty across departments and having disciplinary degree programs include interdisciplinary coursework.

To overcome the difficulties described above, an innovative shared department structure that fosters collaborations to advance interdisciplinary education …

Fishing As Therapy: Impacts On Job Satisfaction And Implications For Fishery Management, Tarsila Seara, Richard Pollnac, John J. Poggie, Carlos Garcia-Quejano, Iris Monnereau, Victor Ruiz

Biology and Environmental Science Faculty Publications

"This study presents unique comparisons, across space and time, regarding aspects of fishers’ perception of their job satisfaction and well-being between two geographic areas where fishing constitutes integral part of the local economy and culture: the Northeast Region US and the Caribbean. Examining differences in aspects of job satisfaction and well-being in such highly different environments (both human and natural) will provide information for developing models to understand how different stressors (e.g. changes in the natural, socio-cultural, economic and managerial environments) affect those whose livelihoods depend directly on fishery resources. Models elucidating relationships between environmental and anthropogenic changes and the …

Application Of Gis To Prioritize Brownfield Sites For Green Building Construction Based On Leed Criteria, Can B. Aktas, Paul Bartholomew, Sabrina Church

Civil Engineering Faculty Publications

Although there are many initiatives to create incentives for investors and developers to invest in and redevelop brownfield sites, efficient prioritization of brownfields by taking into account environmental, economic, and social constraints remains a challenge. This study introduces a method to screen numerous brownfields over large geographic areas by using geographic information systems (GIS) and to assess and prioritize such sites for green building suitability based on leadership in energy and environmental design (LEED) criteria. A case study was completed for the greater Bridgeport, Connecticut region. With 279 brownfield sites, the city has among the highest number of brownfields in …

Influence Of Tick And Mammalian Physiological Temperatures On Borrelia Burgdorferi Biofilms, Shafiq Shaikh, Venkata Arun Timmaraju, Jason Torres, Kayla Socarras, Priyanka A. Theophilus, Eva Sapi

Biology and Environmental Science Faculty Publications

The spirochaete bacterium Borrelia burgdorferi sensu lato is the aetiologic agent of Lyme disease. Borrelia is transmitted to mammals through tick bite and is adapted to survive at tick and mammalian physiological temperatures. We have previously shown that B. burgdorferi can exist in different morphological forms, including the antibiotic-resistant biofilm form, in vitro and in vivo. B. burgdorferi forms aggregates in ticks as well as in humans, indicating potential of biofilm formation at both 23 and 37 °C. However, the role of various environmental factors that influence Borrelia biofilm formation remains unknown. In this study, we investigated the effect …

Effect Of Rpon, Rpos And Luxs Pathways On The Biofilm Formation And Antibiotic Sensitivity Of Borrelia Burgdorferi, Eva Sapi, Priyanka A. Theophilus, Truc V. Pham, Divya Burugu, David Luecke

Biology and Environmental Science Faculty Publications

Borrelia burgdorferi, the causative agent of Lyme disease, is capable of forming biofilm in vivo and in vitro, a structure well known for its resistance to antimicrobial agents. For the formation of biofilm, signaling processes are required to communicate with the surrounding environment such as it was shown for the RpoN—RpoS alternative sigma factor and for the LuxS quorum-sensing pathways. Therefore, in this study, the wild-type B. burgdorferi and different mutant strains lacking RpoN, RpoS, and LuxS genes were studied for their growth characteristic and development of biofilm structures and markers as well as for their antibiotic sensitivity. …

Canine Filamentous Dermatitis Associated With Borrelia Infection, Marianne J. Middelveen, Gheorghe M. Rotaru, Jody L. Mcmurray, Katherine R. Filush, Eva Sapi, Jennie Burke, Agustin Franco, Lorenzo Malquori, Melissa C. Mcelroy, Raphael B. Stricker

Biology and Environmental Science Faculty Publications

Background: Although canine clinical manifestations of Lyme disease vary widely, cutaneous manifestations are not well documented in dogs. In contrast, a variety of cutaneous manifestations are reported in human Lyme disease caused by the spirochete Borrelia burgdorferi. A recently recognized dermopathy associated with tickborne illness known as Morgellons disease is characterized by brightly-colored filamentous inclusions and projections detected in ulcerative lesions and under unbroken skin. Recent studies have demonstrated that the dermal filaments are collagen and keratin biofibers produced by epithelial cells in response to spirochetal infection. We now describe a similar filamentous dermatitis in canine Lyme disease. Methods and …

Changes In Job Satisfaction Through Time In Two Major New England Fishing Ports, Tarsila Seara, Richard Pollnac, John J. Poggie

Biology and Environmental Science Faculty Publications

Fishing communities in the U.S. have been the subject of great transformation due to changes in availability of resources and the implementation of different rules and regulations to manage the fisheries and conserve fish stocks. Job satisfaction has been widely regarded as an important component of well-being especially among fishermen because the occupation of fishing includes attributes of ‘adventure,’ ‘challenge,’ and ‘being outdoors’ infrequently found in other employment. It has been previously demonstrated that management driven changes to fishing communities can directly and indirectly affect aspects of fishermen’s job satisfaction and, consequently, their wellbeing. This paper presents a unique through …

Perceived Adaptive Capacity And Natural Disasters: A Fisheries Case Study, Tarsila Seara, Patricia M. Clay, Lisa L. Colburn

Biology and Environmental Science Faculty Publications

Fishermen may be increasingly impacted by natural disasters, given sea level rise and the likely increased frequency and severity of storms associated with climate change. Planning for resiliency in the face of these disasters requires understanding the factors that influence fishermen’s capacity to adapt. The paper examines perceptions of adaptive capacity of New York and New Jersey commercial and for-hire fishermen one year after Hurricane Sandy. Subjective adaptive capacity to changes in the fishery in general and those caused by natural disasters was assessed. A comparison between commercial and for-hire fishermen revealed important differences and similarities with regard to attributes …