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Articles 1 - 5 of 5
Full-Text Articles in Life Sciences
A Simple Array Platform For Microrna Analysis And Its Application In Mouse Tissues, Xiaoqing Tang, Jozsef Gal, Xun Zhuang, Wang-Xia Wang, Haining Zhu, Guiliang Tang
A Simple Array Platform For Microrna Analysis And Its Application In Mouse Tissues, Xiaoqing Tang, Jozsef Gal, Xun Zhuang, Wang-Xia Wang, Haining Zhu, Guiliang Tang
Plant and Soil Sciences Faculty Publications
MicroRNAs (miRNAs) are a novel class of small noncoding RNAs that regulate gene expression at the post-transcriptional level and play a critical role in many important biological processes. Most miRNAs are conserved between humans and mice, which makes it possible to analyze their expressions with a set of selected array probes. Here, we report a simple array platform that can detect 553 nonredundant miRNAs encompassing the entire set of miRNAs for humans and mice. The platform features carefully selected and designed probes with optimized hybridization parameters. Potential cross-reaction between mature miRNAs and their precursors was investigated. The array platform was …
Impacts Of T-Phylloplanin Gene Knockdown And Of Helianthus And Datura Phylloplanins On Peronospora Tabacina Spore Germination And Disease Potential, Antoaneta B. Kroumova, Ryan W. Shepherd, George J. Wagner
Impacts Of T-Phylloplanin Gene Knockdown And Of Helianthus And Datura Phylloplanins On Peronospora Tabacina Spore Germination And Disease Potential, Antoaneta B. Kroumova, Ryan W. Shepherd, George J. Wagner
Plant and Soil Sciences Faculty Publications
T-phylloplanin proteins secreted to aerial surfaces of tobacco (Nicotiana tabacum) by short procumbent trichomes inhibit spore germination and blue mold disease caused by the oomycete pathogen Peronospora tabacina. Many other plants were found to contain water-washed leaf surface proteins (phylloplanins), but the functions and properties of these are not known. Here we extend earlier evidence for the antifungal activity of T-phylloplanins using a reverse genetics approach. RNA interference of the T-phylloplanin gene in tobacco ‘T.I. 1068’ resulted in loss of T-phylloplanin mRNA and protein, loss of in vitro spore germination inhibition activity, and leaf infection …
Soil Microbial Community Response To Hexavalent Chromium In Planted And Unplanted Soil, Ioannis Ipsilantis, Mark S. Coyne
Soil Microbial Community Response To Hexavalent Chromium In Planted And Unplanted Soil, Ioannis Ipsilantis, Mark S. Coyne
Plant and Soil Sciences Faculty Publications
Theories suggest that rapid microbial growth rates lead to quicker development of metal resistance. We tested these theories by adding hexavalent chromium [Cr(VI)] to soil, sowing Indian mustard (Brassica juncea), and comparing rhizosphere and bulk soil microbial community responses. Four weeks after the initial Cr(VI) application we measured Cr concentration, microbial biomass by fumigation extraction and soil extract ATP, tolerance to Cr and growth rates with tritiated thymidine incorporation, and performed community substrate use analysis with BIOLOG GN plates. Exchangeable Cr(VI) levels were very low, and therefore we assumed the Cr(VI) impact was transient. Microbial biomass was reduced …
Short-Term Response Of Soil Iron To Nitrate Addition, Christopher J. Matocha, Mark S. Coyne
Short-Term Response Of Soil Iron To Nitrate Addition, Christopher J. Matocha, Mark S. Coyne
Plant and Soil Sciences Faculty Publications
The inhibition of soil Fe(III) reduction by fertilizer NO3 − applications is complex and not completely understood. This inhibition is important to study because of the potential impact on soil physicochemical properties. We investigated the effect of adding NO3 − to a moderately well-drained agricultural soil (Sadler silt loam) under Fe(III)-reducing (anoxic) conditions. Stirred-batch experiments were conducted where NO3 − was added (0.05 and 1 mM) to anoxic slurries and changes in dissolved Fe(II) and Fe(III), oxalate-extractable Fe(II), and dissolved NO3 − were monitored as a function of time. Addition of 1 mM NO3 − inhibited Fe(II) production sharply with …
A Novel Endonuclease Activity Associated With The Arabidopsis Ortholog Of The 30-Kda Subunit Of Cleavage And Polyadenylation Specificity Factor, Balasubrahmanyam Addepalli, Arthur G. Hunt
A Novel Endonuclease Activity Associated With The Arabidopsis Ortholog Of The 30-Kda Subunit Of Cleavage And Polyadenylation Specificity Factor, Balasubrahmanyam Addepalli, Arthur G. Hunt
Plant and Soil Sciences Faculty Publications
The polyadenylation of messenger RNAs is mediated by a multi-subunit complex that is conserved in eukaryotes. Among the most interesting of these proteins is the 30-kDa-subunit of the Cleavage and Polyadenylation Specificity Factor, or CPSF30. In this study, the Arabidopsis CPSF30 ortholog, AtCPSF30, is characterized. This protein possesses an unexpected endonucleolytic activity that is apparent as an ability to nick and degrade linear as well as circular single-stranded RNA. Endonucleolytic action by AtCPSF30 leaves RNA 3′ ends with hydroxyl groups, as they can be labeled by RNA ligase with [32P]-cytidine-3′,5′-bisphosphate. Mutations in the first of the three CCCH …