Life Sciences Commons^™

Environmental Isolate Developing Antibiotic Resistance By Complementation, Mary Ridgeway, Ashley Fink, David Mitchell

Biology Faculty Publications

Antibiotic resistance is a growing concern within the scientific community. With few new antibiotics being introduced and an increasing number of resistant microbes, routine bacterial infections are becoming more difficult to treat in clinics and hospitals. The purpose of this study is to compare the ability of two environmental isolates – Staphylococcus aureus (S. aureus) and Exiguobacterium undae (E. undae) to grow in solutions of increasing concentrations of tetracycline and ciprofloxacin. After the bacteria showed grow in the solutions, antibiotic susceptibility was tested by examining zones of inhibition on Trypticase Soy Agar (TSA) plates. Our results …

Anterior Chamber Depth In Mice Is Controlled By Several Quantitative Trait Loci, Demelza R. Larson, Allysa J. Kimber, Kacie J. Meyer, Michael G. Anderson

Biology Faculty Publications

Anterior chamber depth (ACD) is a quantitative trait associated with primary angle closure glaucoma (PACG). Although ACD is highly heritable, known genetic variations explain a small fraction of the phenotypic variability. The purpose of this study was to identify additional ACD-influencing loci using strains of mice. Cohorts of 86 N2 and 111 F2 mice were generated from crosses between recombinant inbred BXD24/TyJ and wild-derived CAST/EiJ mice. Using anterior chamber optical coherence tomography, mice were phenotyped at 10–12 weeks of age, genotyped based on 93 genome-wide SNPs, and subjected to quantitative trait locus (QTL) analysis. In an analysis of ACD among …

Community-Derived Core Concepts For Neuroscience Higher Education, Audrey Chen, Kimberley A. Phillips, Jennifer E. Schaefer, Patrick M. Sonner

Biology Faculty Publications

Core concepts provide a framework for organizing facts and understanding in neuroscience higher education curricula. Core concepts are overarching principles that identify patterns in neuroscience processes and phenomena and can be used as a foundational scaffold for neuroscience knowledge. The need for community-derived core concepts is pressing, because both the pace of research and number of neuroscience programs are rapidly expanding. While general biology and many subdisciplines within biology have identified core concepts, neuroscience has yet to establish a community-derived set of core concepts for neuroscience higher education. We used an empirical approach involving more than 100 neuroscience educators to …

Ecophysiological Implications Of Low Lignin In Eastern Leatherwood (Dirca Palustris L.), Anna Cole, Kayla Marie Rigdon, D. Gordon Brown, Katharine Lora Cary

Biology Faculty Publications

Dirca palustris L. (eastern leatherwood) is an understory shrub found throughout much of eastern North America. Dirca palustris wood has a low concentration of lignin, which is a molecule that grants structural rigidity to cell walls. The branches of D. palustris are thus remarkably flexible, but their low lignin content could cause greater vulnerability to water stress. We examined the conductivity, vessel anatomy, and field water potential of D. palustris and conducted ecological surveys. The data showed that D. palustris was not experiencing substantial drought-induced dysfunction in the field, even during an exceptionally hot and dry summer. Its water potentials …

Navigating The “Covid Hangover” In Physiology Courses, Jennifer E. Schaefer

Biology Faculty Publications

Undergraduate educators and students must navigate lingering aftereffects of the COVID pandemic on education in the 2021–2022 academic year even as COVID continues to impact delivery of undergraduate science education. This article describes ongoing difficulties for undergraduate science, technology, engineering, and mathematics (STEM) students and educators and suggests strategies and easy-to-use resources that may help educators navigate the “COVID hangover” and ongoing COVID-related disruptions.

Understanding Differences In Underrepresented Minorities And First-Generation Student Perceptions In The Introductory Biology Classroom, Jacob Jantzer, Thomas W. Kirkman, Katherine L. Furniss

Biology Faculty Publications

We used quantitative methods to better understand the perceptions of students in an introductory biology course (Biology 101) at a small, liberal arts college (SLAC) that is also a primarily white institution (PWI). In pre/post surveys, we asked students questions related to their attitudes and beliefs about their professor, classmates, and Biology 101. We were especially interested in the responses and outcomes of underrepresented minorities (URM) and first-generation (FG) students. Our findings suggest URM and FG students have a decreased sense of belonging and increased perceptions of exclusion and differential treatment due to race. These findings can explain, in part, …

The Saint John's Maple Syrup Operation: Something Sweet For Everyone, Sarah Gainey, Kyle Rauch, Stephen G. Saupe

Biology Faculty Publications

No abstract provided.

Minnesota’S Third Tufted Duck, Philip C. Chu

Biology Faculty Publications

No abstract provided.

External Morphology Of The Eggs Of Asplanchnopus Multiceps (Schrank, 1793) (Rotifera): Solving The 150-Year-Old Case Of Mistaken Identity, Elizabeth S. Wurdak

Biology Faculty Publications

This report calls into question the practice of passing along illustrations and anatomical descriptions from the literature without scrutiny. An error made by Leydig (Zeischrift für wissenschaftliche Zoologie 6:1–120, 1854) in characterizing the egg of Asplanchnopus multiceps was perpetuated in authoritative publications (Hyman, The Invertebrates: Acanthocephala, Aschelminthes, and Entoprocta. The pseudocoelomate Bilateria, McGraw-Hill Book Company, New York, 1951; Voigt, Rotatoria: Die Rädertiere Mitteleuropas, Gebrüder Borntraeger, Berlin-Nikolassee, 1957; Ruttner-Kolisko, Plankton rotifers, biology and taxonomy supplementary edition of Die Binnengewässer 26, Stuttgart, 1974; Koste, Rotatoria: Die Rädertiere Mitteleuropas begründet von Max Voigt. Monogononta 2. Auflage neubearbeitet von Walter Koste, Gebrüder Borntraeger, Berlin, …

Skeletal Muscle Mass And Composition During Mammalian Hibernation, Clark J. Cotton

Biology Faculty Publications

Hibernation is characterized by prolonged periods of inactivity with concomitantly low nutrient intake, conditions that would typically result in muscle atrophy combined with a loss of oxidative fibers. Yet, hibernators consistently emerge from winter with very little atrophy, frequently accompanied by a slight shift in fiber ratios to more oxidative fiber types. Preservation of muscle morphology is combined with down-regulation of glycolytic pathways and increased reliance on lipid metabolism instead. Furthermore, while rates of protein synthesis are reduced during hibernation, balance is maintained by correspondingly low rates of protein degradation. Proposed mechanisms include a number of signaling pathways and transcription …

Aquastella Gen. Nov.: A New Genus Of Saprolegniaceous Oomycete Rotifer Parasites Related To Aphanomyces, With Unique Sporangial Outgrowths, Daniel P. Molloy, Sally L. Glockling, Clifford A. Siegfried, Gordon W. Beakes, Timothy Y. James, Sergey E. Mastitsky, Elizabeth S. Wurdak, Laure Giamberini, Michael J. Gaylo, Michael J. Nemeth

Biology Faculty Publications

The oomycete genus Aquastella is described to accommodate two new species of parasites of rotifers observed in Brooktrout Lake, New York State, USA. Three rotifer species – Keratella taurocephala,Polyarthra vulgaris, and Ploesoma truncatum – were infected, and this is the first report of oomycete infection in these species. Aquastella attenuata was specific to K. taurocephala and Aquastella aciculariswas specific to P. vulgaris and P. truncatum. The occurrence of infections correlated with peak host population densities and rotifers were infected in the upper layers of the water column. Sequencing of 18S rRNA and phylogenetic analysis of …

A Hands-On Activity To Introduce The Effects Of Transmission By An Invasive Species, Barbara May

Biology Faculty Publications

This activity engages students to better understand the impact of transmission by invasive species. Using dice, poker chips, and paper plates, an entire class mimics the spread of an invasive species within a geographic region. The activity can be modified and conducted at the K-16 levels.

Engaging Students In A Bioinformatics Activity To Introduce Gene Structure And Function, Barbara J. May

Biology Faculty Publications

Bioinformatics spans many fields of biological research and plays a vital role in mining and analyzing data. Therefore, there is an ever-increasing need for students to understand not only what can be learned from this data, but also how to use basic bioinformatics tools. This activity is designed to provide secondary and undergraduate biology students to a hands-on activity meant to explore and understand gene structure with the use of basic bioinformatic tools. Students are provided an “unknown” sequence from which they are asked to use a free online gene finder program to identify the gene. Students then predict the …

Sprague's Pipit In Clay County, Philip Chu

Biology Faculty Publications

No abstract provided.

The Space Age Sugar Shack, Stephen G. Saupe

Biology Faculty Publications

No abstract provided.

Genomics Of A Metamorphic Timing Qtl: Met1 Maps To A Unique Genomic Position And Regulates Morph And Species-Specific Patterns Of Brain Transcription, Robert B. Page, Meredith A. Boley, D. Kevin Kump, S. Randal Voss

Biology Faculty Publications

Very little is known about genetic factors that regulate life history transitions during ontogeny. Closely related tiger salamanders (Ambystoma species complex) show extreme variation in metamorphic timing, with some species foregoing metamorphosis altogether, an adaptive trait called paedomorphosis. Previous studies identified a major effect QTL (met1) for metamorphic timing and expression of paedomorphosis in hybrid crosses between the biphasic Eastern tiger salamander (Ambystoma tigrinum tigrinum) and the paedomorphic Mexican axolotl (Ambystoma mexicanum). We used existing hybrid mapping panels and a newly created hybrid cross to map the met1 genomic region and determine the …

Quantitative Acoustic Analysis Of The Vocal Repertoire Of The Golden Rocket Frog (Anomaloglossus Beebei), Beth A. Pettitt, Godfrey R. Bourne, Mark A. Bee

Biology Faculty Publications

This study describes the vocal repertoire of the Guyanan golden rocket frog, Anomaloglossus beebei, a bromeliad specialist with biparental care. Using multivariate analyses of nine call properties, as well as the occurrence of nonlinear phenomena, three signal types were distinguished—advertisement, courtship, and aggressive calls. Although all three call types were composed of a short series of rapidly repeated pulses, advertisement calls were produced at higher amplitudes and had longer pulse durations than both courtship calls and aggressive calls. Courtship calls exhibited lower dominant frequencies than both advertisement and aggressive calls, which had similar dominant frequencies. Aggressive calls had more …

Maple Syrup: St. John’S Sweetest Springtime Tradition, Stephen G. Saupe

Biology Faculty Publications

St. John’s is the home of one of Minnesota’s oldest maple syrup operations. The monks began making syrup in 1942 and have continued roughly every other spring until the present. Currently, the operation is jointly run by the Abbey and St. John’s Arboretum and it is one of the few maple syrup operations associated with a Minnesota college or university. The process by which maple syrup is made at St. John’s differs little from the procedures begun more than 60 years ago. In spring, sugar maple trees are tapped, sap is collected, and then it is boiled in the sugar …

High Altitude Diving In River Otters: Coping With Combined Hypoxic Stresses, Jamie R. Crait, Henry D. Prange, Noah A. Marshall, Henry J. Harlow, Clark Cotton, Merav Ben-David

Biology Faculty Publications

River otters (Lontra canadensis) are highly active, semi-aquatic mammals indigenous to a range of elevations and represent an appropriate model for assessing the physiological responses to diving at altitude. In this study, we performed blood gas analyses and compared blood chemistry of river otters from a high-elevation (2357 m) population at Yellowstone Lake with a sea-level population along the Pacific coast. Comparisons of oxygen dissociation curves (ODC) revealed no significant difference in hemoglobin-oxygen (Hb-O₂) binding affinity between the two populations - potentially because of demands for tissue oxygenation. Instead, high-elevation otters had greater Hb concentrations (18.7 …

Linear Methods For Analysis And Quality Control Of Relative Expression Ratios From Quantitative Real-Time Polymerase Chain Reaction Experiments, Robert B. Page, Arnold J. Stromberg

Biology Faculty Publications

Relative expression quantitative real-time polymerase chain reaction (RT-qPCR) experiments are a common means of estimating transcript abundances across biological groups and experimental treatments. One of the most frequently used expression measures that results from such experiments is the relative expression ratio (R_E), which describes expression in experimental samples (i.e., RNA isolated from organisms, tissues, and/or cells that were exposed to one or more experimental or nonbaseline condition) in terms of fold change relative to calibrator samples (i.e., RNA isolated from organisms, tissues, and/or cells that were exposed to a control or baseline condition). Over the past decade, several …

Maple Syrup: A Sweet Springtime Lesson, Stephen G. Saupe, Sarah Gainey

Biology Faculty Publications

No abstract provided.

Microarray Analysis Of A Salamander Hopeful Monster Reveals Transcriptional Signatures Of Paedomorphic Brain Development, Robert B. Page, Meredith A. Boley, Jeramiah J. Smith, Srikrishna Putta, Stephen R. Voss

Biology Faculty Publications

Background

The Mexican axolotl (Ambystoma mexicanum) is considered a hopeful monster because it exhibits an adaptive and derived mode of development - paedomorphosis - that has evolved rapidly and independently among tiger salamanders. Unlike related tiger salamanders that undergo metamorphosis, axolotls retain larval morphological traits into adulthood and thus present an adult body plan that differs dramatically from the ancestral (metamorphic) form. The basis of paedomorphic development was investigated by comparing temporal patterns of gene transcription between axolotl and tiger salamander larvae (Ambystoma tigrinum tigrinum) that typically undergo a metamorphosis.

Results

Transcript abundances from whole brain …

Avoidance Of Skeletal Muscle Atrophy In Spontaneous And Facultative Hibernators, Clark Cotton, Henry J. Harlow

Biology Faculty Publications

Smooth and skeletal muscle changes were compared from overwintering white-tailed prairie dogs, spontaneous hibernators that undergo regular, low-temperature torpor bouts, and black-tailed prairie dogs, facultative hibernators that use sporadic, moderate-temperature torpor bouts. The objectives were to assess the abilities of these two species with dramatically different torpor patterns (1) to conserve skeletal muscle morphology, protein, and strength and (2) to use labile protein in the small intestine and liver during the winter season of reduced activity and food intake. Mass and protein concentration of the extensor digitorum longus (EDL), soleus, liver, and small intestine, as well as skeletal muscle strength …

Do Hypothermic Tissue Tolerances Limit Torpor Expression?, Clark J. Cotton, Henry J. Harlow

Biology Faculty Publications

1. Arrest temperatures and Q₁₀ values for extensor digitorum longus (EDL), soleus, trabecula, and jejunum muscle twitch strength, contraction time, and 0.5 relaxation time were calculated for a deep torpor hibernator, white-tailed prairie dog (WTPD) (Cynomys leucurus), a shallow torpor hibernator, black-tailed prairie dog (BTPD) (Cynomys ludovicianus), and a non-hibernator, lab rat (Rattus norvegicus) to test the hypothesis that tissue temperature tolerances limit the depth of expressed torpor.

2. There were no temperature tolerance differences between the tissues of the two species of hibernators. Both hibernating species had arrest temperatures and Q_{10 …}

Microarray And Cdna Sequence Analysis Of Transcription During Nerve-Dependent Limb Regeneration, James R. Monaghan, Leonard G. Epp, Srikrishna Putta, Robert B. Page, John A. Walker, Chris K. Beachy, Wei Zhu, Gerald M. Pao, Inder M. Verma, Tony Hunter, Susan V. Bryant, David M. Gardiner, Tim T. Harkins, S. Randal Voss

Biology Faculty Publications

Background

Microarray analysis and 454 cDNA sequencing were used to investigate a centuries-old problem in regenerative biology: the basis of nerve-dependent limb regeneration in salamanders. Innervated (NR) and denervated (DL) forelimbs of Mexican axolotls were amputated and transcripts were sampled after 0, 5, and 14 days of regeneration.

Results

Considerable similarity was observed between NR and DL transcriptional programs at 5 and 14 days post amputation (dpa). Genes with extracellular functions that are critical to wound healing were upregulated while muscle-specific genes were downregulated. Thus, many processes that are regulated during early limb regeneration do not depend upon nerve-derived factors. …

Transcriptional Response Of Mexican Axolotls To Ambystoma Tigrinum Virus (Atv) Infection, Jennifer D. Cotter, Andrew Storfer, Robert B. Page, Christopher K. Beachy, S. Randal Voss

Biology Faculty Publications

Background

Very little is known about the immunological responses of amphibians to pathogens that are causing global population declines. We used a custom microarray gene chip to characterize gene expression responses of axolotls (Ambystoma mexicanum) to an emerging viral pathogen, Ambystoma tigrinum virus (ATV).

Result

At 0, 24, 72, and 144 hours post-infection, spleen and lung samples were removed for estimation of host mRNA abundance and viral load. A total of 158 up-regulated and 105 down-regulated genes were identified across all time points using statistical and fold level criteria. The presumptive functions of these genes suggest a robust …

Effect Of Thyroid Hormone Concentration On The Transcriptional Response Underlying Induced Metamorphosis In The Mexican Axolotl (Ambystoma), Robert B. Page, Stephen R. Voss, Amy K. Samuels, Jeramiah J. Smith, Srikrishna Putta, Christopher K. Beachy

Biology Faculty Publications

Background

Thyroid hormones (TH) induce gene expression programs that orchestrate amphibian metamorphosis. In contrast to anurans, many salamanders do not undergo metamorphosis in nature. However, they can be induced to undergo metamorphosis via exposure to thyroxine (T₄). We induced metamorphosis in juvenile Mexican axolotls (Ambystoma mexicanum) using 5 and 50 nM T₄, collected epidermal tissue from the head at four time points (Days 0, 2, 12, 28), and used microarray analysis to quantify mRNA abundances.

Results

Individuals reared in the higher T₄ concentration initiated morphological and transcriptional changes earlier and completed metamorphosis by …

First Slaty-Backed Gull For Minnesota, Philip C. Chu

Biology Faculty Publications

No abstract provided.

First Breeding Of The Snowy Plover In Minnesota, Philip C. Chu

Biology Faculty Publications

No abstract provided.

First Confirmed Breeding Of The Rock Wren In Minnesota, Philip C. Chu

Biology Faculty Publications

No abstract provided.