Life Sciences Commons^™

Sherwin Carlquist (1930–2021)—A Botanical Luminary, Thomas S. Elias, Mare Nazaire, Gary D. Wallace, Vanessa E. Ashworth

Aliso: A Journal of Systematic and Floristic Botany

Sherwin Carlquist (1930–2021) was an internationally respected and distinguished botanist who held faculty positions in botany at California Botanic Garden, Claremont Graduate University and Pomona College between 1956 and 1992. His legacy includes major scholarly contributions to plant systematics, plant anatomy, especially wood anatomy, island biogeography, evolutionary and ecological reasoning, and a prolific publication record. A loose collection of paragraphs by those who interacted with him addresses Carlquist's tremendous botanical output, teaching, mentorship, scientific scholarship, and his roles as a colleague and friend.

A Vascular Flora Of The Selkirk Mountains, Bonner And Boundary Counties, Idaho, Harpo Faust, Ben Legler, David C. Tank

Aliso: A Journal of Systematic and Floristic Botany

The vascular flora described here covers ~2295 square kilometers (~886 square miles) of the Selkirk Mountains that lie in the Idaho Panhandle, covering an elevational range of 540–2330 m (1770–7670 ft). The majority of the mountain range is underlain by granitic rock of the Kaniksu Batholith, and is diversified by the rich glacial history of the Panhandle. The study area contains multiple pockets of alluvial and glacial deposition that serve as specialized habitat for present-day floristic diversity within the range. The Idaho Selkirks are part of the Northern Rocky Mountains and have floristic influences from the Pacific coast, boreal north, …

A Question Of Priority: Pterospora Andromedea Nuttall Vs. Monotropa Procera Torrey Ex Eaton (Monotropoideae, Ericaceae), Gary D. Wallace

Aliso: A Journal of Systematic and Floristic Botany

Clarity is lacking on the priority of the names Pterospora andromedea Nutt. versus Monotropa procera Torr. ex Eaton, both of which were published in 1818, and the suggested clear answer may not be the correct answer. Taxonomic Literature, second edition, provides a publication date of 14 July 1818 for Nuttall’s Genera of North American Plants and a publication date of June 1818 for Eaton’s Manual of Botany ed. 2. However, upon closer scrutiny, the situation is more complex. The sources for these publication dates are discussed in order to trace the likely sequence of events leading up …

Examining Soil Microbial Diversity In Transition Zones Between Corn Fields And Restored Prairie In The Upper Midwest, Anna M. Burns

Scripps Senior Theses

Prairies were once the largest ecosystem in North America, but agriculture and settlement has destroyed up to 99% of their pre-colonization extent. Prairie restorations are a strategy to recover the biodiversity and carbon sequestration functions of these grasslands, but typically occur in isolated strips between agricultural fields. My thesis analyzes how effective prairie restorations in the Liberty Prairie (northeastern Illinois) are at recovering the diversity of the prairie soil microbiome, focusing on verrucomicrobia abundance, alpha diversity, and soil physical characteristics.

Here, There, And Everywhere: Probing Ubiquitin-Cavitand Binding Via 15n-1h Hsqc, Julia Didziulis

Scripps Senior Theses

Ubiquitination and other post-translational modifications play a major role in the proliferation of many neurodegenerative diseases, developmental disorders, and cancers, and as such are subjects of recently increased biochemical interest. Expanding upon such research, this study confirmed a robust method of ubiquitin expression and purification, then used 15N-1H HSQC to analyze ubiquitin samples containing varying concentrations of a deep cavitand with affinity for lysine and arginine side chains. In the pure ubiquitin spectrum, arginine side chain chemical shifts were detected in the nitrogen 80-85 ppm range and lysine side chain signals were undetected. However, upon introduction of the cavitand, collection …

Making The Invisible Visible: Mapping Chronic Pain Through Art, Caroline Young

Scripps Senior Theses

This Studio Art thesis explores how I use my art practice as a chronic pain healing process. It draws on the fundamentals of the neuroscience behind pain and the implications of this science for people with chronic pain. People with chronic pain often turn to alternative healing techniques in their search for relief; my own alternative healing approach comes from my art practice of “pain mapping."

The artistic healing process that I have developed takes inspiration from chronically ill artists such as Frida Kahlo and Anna Cowley Ford. The artistic mapping of my pain that I have developed primarily uses …

Footprints On The Prairie: Examining The Interlocking Land Histories Of The Liberty Prairie Reserve, Illinois, Anna M. Burns

Scripps Senior Theses

This thesis begins with the local history of the Liberty Prairie, the land where I conducted the ecological field-work that I later discuss in my second thesis on soil microbiome diversity (“Examining Soil Microbial Diversity in Transition Zones Between Corn Fields and Restored Prairie in the Upper Midwest"). I examine the Indigenous histories of the land, and the conflicts between the Bodwéwadmi and Euro-American settlers that resulted in the land being farmed for cattle, corn, and soy for over a hundred and fifty years. I then take a step back and analyze the broader historical contexts of Midwestern Corn Belt …

Understanding The Environmental Implications Of The Microbiome Of Canals In Bangkok, Thailand, Emma Tao

Scripps Senior Theses

The canals of Bangkok, Thailand hold significant economic and social value, yet the increasing urbanization of the city has resulted in increased water pollution. Agricultural runoff and urban waste contribute to the degradation of the water quality, which has impaired its safe usage by the people of the city. This study focused on analyzing the microbiome of the water in the canals in correlation with the surrounding environment, both in and out of the water. Ten sites along the Bangkok canals were analyzed. DNA was isolated for the sequencing of the 16s rRNA gene to determine the microbial diversity of …

Agroecology Curriculum Proposal, Emily Kuhn

Pitzer Senior Theses

The purpose of this research is to establish the viability of an Agroecology major at Pitzer College. I begin by problematizing Industrial Agriculture and making a case for Pitzer College to become a higher education leader in the global paradigm shift towards socially and ecologically just food systems. The proposed curriculum compiles pre-existing classes, objectives expanded from the EA field group, and an internship component embedded at five local land-based learning partner sites. I conducted a SWOT (strengths, weaknesses, opportunities, and threats) analysis of the Environmental Analysis field group as a potential host for the agroecology track, including study abroad …

Growing Meat On Plants: Using Intermediate Cbd-Rgd Fusion Proteins To Improve Bovine Satellite Cell Attachment On Cellulose-Based Scaffolds, Julian Cohen

Pitzer Senior Theses

Cellular agriculture is an emerging technology aiming to replace existing methods for animal agriculture with tissue engineering and cell culture-based technologies. Cultured meat falls within this purview, using a biomimetic approach to recreate animal muscle tissue through tissue engineering. In the attempt to diminish the necessity of animal-derived materials within this process, plant-based scaffolds can be used as a substrate upon which stem cells are cultured. Due to the unfavorable environment of cellulose for mammalian cell-surface proteins, the approach was taken of coating cellulose nanofiber films with a fusion protein composed of a cellulose binding domain (CBD) protein and the …

Over-Wintering Grounds Social Behavior Of White-Crowned Sparrows, Lauryn Jeans

CMC Senior Theses

White-Crowned Sparrows (WCSP), Zonotrichia leucophrys gambelii, are small, migrating passerine birds whose over-wintering ground social behavior is poorly researched. Suitable wintering grounds must balance climate preference and migration length, are affected by territory size and habitat competition, and have long-term effects on bird fitness. A study observed Golden-Crowned Sparrows (Zonotrichia atricapilla) returning every year to the same wintering ground and forming strong social communities during those winter months. We predicted that WCSPs exhibit wintering ground fixation and form stable flock structure at the Bernard Field Station (BFS) in Southern California during the winter months of October to …

Identification Of The Role Of Swra In Copper Induced Poly-Gamma-Glutamic Acid Production In Bacillus Subtilis, Maya Addison

Scripps Senior Theses

Each year over 2.8 million Americans are infected by an antibiotic resistant strain of bacteria with over 35, 000 dying as a result (CDC). The lack of development of new antibiotics has renewed interest in the antimicrobial properties of copper. Gram positive bacterium such as Bacillus subtilis produce poly-gamma-glutamic acid (γ-PGA) to sequester excess copper ions. swrA has shown to be essential for proper activation of the pgs operon by phosphorylated DegU via an unknown mechanism. This study seeks to determine the role of swrA in copper induced gamma-PGA production and if swrA and ppsB are involved in copper resistance. …

Stress And The City: The Impacts Of City Living And Urbanization On Mental Health, Natalie Akins

Scripps Senior Theses

Urbanization is causing a demographic and cultural shift to the landscape of cities across the globe. Although urban living can be advantageous for both individual and societal growth, it can negatively affect mental health and wellbeing. Individuals living in urban environments have an increased risk for mental disorders like depression and schizophrenia. Certain challenges common in urban environments and associated with increased stress, may be causing the increase with mental illness. Chronic stress and the subsequent hyperactivation of the hypothalamic-pituitary-adrenal axis and sustained synthesis of glucocorticoids is detrimental to metabolic, endocrine, and immunologic processes. The overexposure to glucocorticoids can lead …

The Writing Brain: Writing As An Exercise Of Functional Network Optimization To Facilitate Psychologically Healing Effects, Isabelle Antolin

Scripps Senior Theses

James Baldwin wrote, “When you’re writing, you’re trying to find out something which you don’t know” (as cited in Plimpton 1989). Writers, like James Baldwin, have for a long time acknowledged that writing has some psychological effect. However, the neural basis of this effect has yet to be understood. Neuroimaging studies have examined writing as a creative process, identifying a predominantly left fronto-parieto-temporal network activation during writing tasks (including brainstorming, drafting, and revising). Importantly, one study examining poetry composition found that a generative phase of writing was associated with a significant anti-correlative activation pattern between the dorsal attention network (DAN) …

A Flora Of Coyote Ridge And Flat, Inyo County, California, Martin Purdy

CGU Theses & Dissertations

California’s Sierra Nevada mountain range contains a disproportionate share of the state’s plant diversity and is one of the most floristically diverse regions of its size in the United States. The high Sierra Nevada, in particular, has been identified as an important center of species richness and endemism within California. Anthropogenic climate warming is expected to disproportionately affect mountain ecosystems, and models have predicted serious habitat contraction and extirpation for many alpine plant taxa. A specimen-based inventory of the vascular and non-vascular plants of Coyote Ridge and Flat was conducted to establish baseline data for one such sensitive alpine and …

Not Coming Home: The Flaws In Skilled Nursing Facilities And Their Contribution To Cyclical Hospitalizations Of Post-Acute Patients, Kate Eisenbraun

Pitzer Senior Theses

This literature review will discuss the experience of patients within the US healthcare system, focusing on skilled nursing facilities (SNFs) and their contribution to cyclical hospitalizations. SNFs differ from nursing homes and other long-term care facilities by providing short-term, post-operational rehabilitation at a cost lower than what is offered at hospitals. Despite their critical role, SNFs often face fundamental issues, such as understaffing, underfunding, and staff burn-out, which result in lower quality patient care. This thesis argues that the issues faced by SNFs are a result of inconsistencies with state and federal staffing regulations, as well as inadequate insurance reimbursements. …

Parent-Prompted Dysregulation: Do Parents Serve As Cues For Dysregulation In Some Children?, Daniel Lee

Pitzer Senior Theses

Children occasionally encounter dysregulation when interacting with their parents in relatively neutral or positive scenarios. Given that the cause of dysregulation is usually relational, meaning it is often cued by someone who is seen to have power or control over the person, children could be particularly susceptible to dysregulation in the presence of their parents. However, when examining the existing literature, there appeared to be a lack of research and knowledge concerning this topic, with much of the literature focusing on the effect of child stressors on parental dysregulation. As a result, the term parent-prompted dysregulation was developed to refer …

The Influence Of Political Party Affiliation And Park Accessibility On Covid-19 Case Incidence, Sascha Wolf-Sorokin

CMC Senior Theses

This paper examines the joint effect of political party affiliation and the urban landscape, as measured by access to parks, on case rates during the COVID-19 pandemic in the United States. The 2016 and 2020 U.S. Presidential Election returns are used as a proxy for a county’s political party affiliation prior to and during the COVID-19 pandemic. A county population’s spatial relationship to its parks encapsulates the green open space within an urban environment. The data set controls for features of the built environment, socioeconomic and demographic characteristics (race, gender, income, education), COVID-19 government regulations, and presidential election returns. Using …

A Serological Analysis Of Sars-Cov-2 Infection In The Obstetric Population, Sophia Rose

CMC Senior Theses

In December 2019, the surfacing and spread of a novel coronavirus, SARS-CoV-2, resulted in the global COVID-19 pandemic. As a viral antigen, SARS-CoV-2 poses a particular threat to the obstetric population due to physiological and immunological changes that women face during pregnancy. While recent studies have found that SARS-CoV-2 may have better clinical outcomes as compared to other betacoronaviruses, adverse pregnancy events such as ICU admission, preeclampsia, and/or preterm birth have been associated with COVID-19. Progress has been made in better understanding the pathophysiology of SARS-CoV-2 in pregnancy, but there is still much to be known about the interaction …

Does Seclusion Alter Amygdala Activity And Amygdala-Medial Prefrontal Cortex Connectivity Leading To Emotional Dysregulation In Children? A Case For Ending Seclusion And Restraint In Public Schools, Crystal Anyanwu

CMC Senior Theses

The use of seclusion as a disciplinary practice in schools has been cited as an effective way to mitigate a child’s behavior if they pose a threat of imminent danger to others or themselves and an effective means of helping a child regulate their emotions. However, research has shown that this practice has resulted in psychological harm (e.g. traumatic stress responses), physical injuries, and death to both staff applying these techniques and the children experiencing them. The effects of seclusion on the neurodevelopment of children remain widely unknown. Traumatic stress has been shown to increase the volume of the amygdala …

Designing Virtual Reality Headsets To Prevent Myopia, Kyril Van Schendel

CMC Senior Theses

Virtual reality (VR) headsets are currently being designed and developed for consumer use. Simultaneously, the rate of myopic development is increasing around the world. Little is known about the connection between the proximity viewing in VR headsets and myopic development. The past three decades of research have indicated a probable relationship between near-work activities and the development of myopia. Based on the current research, VR headsets do not appear to induce a strong myopiagenic stimulus on axial elongation. This paper offers a potential explanation and proposes a set of design recommendations for designing future VR headsets that prevent myopia.

Spatial Geochemical Changes In Central And East Texas Soils Over Time Resulting From Human Decomposition, Isabela Marisol Overturf

CMC Senior Theses

Human decomposition is studied to aid forensic investigations and better understand the impact of cemeteries on urban resources like soil and groundwater. The purpose of this study was to identify changes in soil geochemistry at and around a human grave to search for lateral nutrient movement and possibly identify new patterns in elemental concentrations that could be used in estimating post-mortem intervals (PMIs). At the Forensic Anthropology Research Facility (FARF) at Texas State San Marcos, soil samples were collected from a shallow grave over the course of 54 days to conduct analysis for organic matter content, texture, pH, and bulk …

A Study Of Limited Bedding And Nesting On Maternal Behavior For Postpartum Depression, Emma Brezoczky

CMC Senior Theses

Postpartum depression (PPD) affects up to 20% of mothers in the US and can detrimentally affect both the mother and psychosocial development of the child (Pearlstein et al, 2009). So far, research on PPD is limited and the underlying neuropathology remains unclear. Low socioeconomic status is one risk factor that increases the risk of PPD tenfold (Goyal et al, 2010). The low resource limited bedding and nesting (LBN) paradigm used for rodents has the potential to model this risk factor. LBN has not previously been studied with PPD, but observations of disrupted maternal behaviors and depressive phenotypes makes it a …

Energy As A Limiting Factor In Neuronal Seizure Control: A Mathematical Model, Sophia E. Epstein

CMC Senior Theses

The majority of seizures are self-limiting. Within a few minutes, the observed neuronal synchrony and deviant dynamics of a tonic-clonic or generalized seizure often terminate. However, a small epilesia partialis continua can occur for years. The mechanisms that regulate subcortical activity of neuronal firing and seizure control are poorly understood. Published studies, however, through PET scans, ketogenic treatments, and in vivo mouse experiments, observe hypermetabolism followed by metabolic suppression. These observations indicate that energy can play a key role in mediating seizure dynamics. In this research, I seek to explore this hypothesis and propose a mathematical framework to model how …

Physician Assisted Dying (Pad): An Investigation Into The Mechanistic Action Of Opioid, Benzodiazepine, And Barbiturate Administration As An Alternative Measure To Forgoing Life Sustaining Treatment And Aggressive Palliation., Jordana Chanel Deighton

CMC Senior Theses

Whilst modern medicine has increased longevity, the rise in life expectancy has brought about new struggles, namely that of aging and age related disease. Thus, humanity has been presented with a new problem: at what point is death preferable to aggressive life-prolonging treatment in the face of inevitable death? And if so, what right do individuals have to control the circumstances of their death? In the West, traditionally, individuals who seek to end their own lives in the face of terminal illness opt for forgoing artificial hydration and nutrition. Driven by an increase in desire for autonomous dignified death, a …

Effects Of Drought On Habitat Quality For Native Bees In Residential Gardens Of Claremont, Ca, Max Proctor

CMC Senior Theses

Over 1,500 of the 4000 bee species found in North America inhabit California. Native bees are declining however, largely due to climate change and agricultural intensification. Previous research shows that cities can sustain diverse bee communities, due to the diversity of ornamental flowers. Urban green space represents an opportunity for native bee conservation. Residential gardens provide lots of green space and are urban pollinator hotspots. Managing yards for increased floral resources and nesting habitat can benefit native bee communities. Turfgrass provides few floral or nesting resources and negatively correlates with bee diversity. The 2011-2017 California drought caused many homeowners to …