Life Sciences Commons^™

Post-Speleogenetic Biogenic Modification Of Gomantong Caves, Sabah, Borneo, Joyce Lundberg, Donald A. Mcfarlane

WM Keck Science Faculty Papers

The Gomantong cave system of eastern Sabah, Malaysia, is well-known as an important site for harvesting edible bird-nests and, more recently, as a tourist attraction. Although the biology of the Gomantong system has been repeatedly studied, very little attention has been given to the geomorphology. Here, we report on the impact of geobiological modification in the development of the modern aspect of the cave, an important but little recognized feature of tropical caves. Basic modeling of the metabolic outputs from bats and birds (CO₂, H₂O, heat) reveals that post-speleogenetic biogenic corrosion can erode bedrock by between …

Subaerial Freshwater Stromatolites In Deer Cave, Sarawak – A Unique Geobiological Cave Formation, Joyce Lundberg, Donald A. Mcfarlane

WM Keck Science Faculty Papers

A suite of distinctive freshwater subaerial phosphatic stromatolites is developed close to the northeastern entrance of Deer Cave, Gunung Mulu National Park, Sarawak, Borneo, in conditions of very low light but ample supply of nutrients from guano. These stromatolites are not particulate; they are composed of alternating layers of more porous and more dense amorphous hydroxylapatite. This biomineralization occurs as moulds of coccoid (the majority) and filamentous (less abundant) cyanobacteria. Mineralization occurs at a pH of ~ 7.0 in the extracellular sheaths and in micro-domains of varying carbonate content in the surrounding mucus of the biofilm. The most recent surfaces …

An Extraordinary Example Of Photokarren In A Sandstone Cave, Cueva Charles Brewer, Chimantá Plateau, Venezuela: Biogeomorphology On A Small Scale, Joyce Lundberg, Donald A. Mcfarlane, Charles Brewer-Carias

WM Keck Science Faculty Papers

A distinctive suite of small-scale erosional forms that are oriented towards the light occur close to the entrance of Cueva Charles Brewer, a large cave in a sandstone tepui, in SE Venezuela. These are the third example of photokarren ever studied in the world, the other two being from Borneo and Ireland. They are the only photokarren ever described from sandstone, and the only example from a non-carbonate environment. The host rock is a poorly-lithified unit of the Precambrian quartz arenite of the Roraima Supergroup. The forms are all oriented towards the light at 30° regardless of rock surface orientation. …

A Unique Population Of Cave Bears (Carnivora: Ursidae) From The Middle Pleistocene Of Kents Cavern, England, Based On Dental Morphometrics, Donald A. Mcfarlane, Martin Sabol, Joyce Lundberg

WM Keck Science Faculty Papers

The ‘breccia’ stratum from Kents (we follow local tradition in using the form ‘Kents’, without an apostrophe) Cavern, England, has been well known for its rich yield of cave-bear material since excavations began in the mid-19th century. Recent work has established that the bears are of latest MIS 12 or earliest MIS 11 age. A life table based on a collection of 67 molariform teeth is consistent with the use of the cave as a hibernaculum. Univariate and morphological assessment of the teeth shows an unusual range of primitive and more derived characters. Multivariate morphometric analysis of cave-bear teeth from …

An Undescribed Gecko (Gekkonidae: Cyrtodactylus) From Deer Cave, Gunung Mulu National Park, Sarawak, With Comments On The Distribution Of Bornean Cave Geckos, Donald A. Mcfarlane, Joyce Lundberg, Keith Christenson

WM Keck Science Faculty Papers

Geckos of the genus Cyrtodactylus are a speciose group in Southeast Asia, with at least nine species known from the island of Borneo (Das & Ismail, 2001; Das, 2006). Of these species, Cyrtodactylus cavernicolus has the smallest known range and is therefore the most vulnerable, a status that is reflected in the species having been designated a Totally Protected Species in Sarawak. Confirmed records of C. cavernicolus are known only from Niah Cave, located in an isolated limestone block known as the Gunung Subis massif, approximately 13 km² in extent. The Niah Cave Gecko is presumed to be dependent on …

Bats And Bell Holes: The Microclimatic Impact Of Bat Roosting, Using A Case Study From Runaway Bay Caves, Jamaica, Joyce Lundberg, Donald A. Mcfarlane

WM Keck Science Faculty Papers

The microclimatic effect of bats roosting in bell holes (blind vertical cylindrical cavities in cave roofs) in Runaway Bay Caves, Jamaica, was measured and the potential impact of their metabolism on dissolution modelled. Rock temperature measurements showed that bell holes with bats get significantly hotter than those without bats during bat roosting periods (by an average of 1.1 °C). The relationship is clearest for bell holes with more than about 300 g aggregate bat body mass and for bell holes that are moderately wide and deep, of W:D ratio between 0.8 and 1.6. Measurement of temperature decay after abandonment showed …

A Note On The Thermal Ecology And Foraging Behaviour Of The Egyptian Fruit Bat, Rousettus Aegyptiacus, At Mt. Elgon, Kenya, Donald A. Mcfarlane, Joyce Lundberg

WM Keck Science Faculty Papers

The Egyptian fruit bat, Rousettus aegyptiacus, is an abundant and widely distributed African pteropid (Nowak, 1999). The species is unusual amongst pteropids in being an obligate cave-dweller (Kwiecinski & Griffiths, 1999), sometimes reaching colony sizes in the thousands (Kingdon, 1974). In the caves of Mt. Elgon National Park, western Kenya (1° 08′N, 34° 39′E), precision temperature loggers placed in major Rousettus roosts and intervening passages have allowed us to precisely monitor bat emergence and return times.

The major caves of Mt. Elgon National Park consist of geophagically modified tunnels and collapse chambers cut into Miocene-aged pyroclastic strata (Lundberg & …

Clustering Neural Spike Trains With Transient Responses, John D. Hunter, Jianhong Wu, John Milton

WM Keck Science Faculty Papers

The detection of transient responses, i.e. nonstationarities, that arise in a varying and small fraction of the total number of neural spike trains recorded from chronically implanted multielectrode grids becomes increasingly difficult as the number of electrodes grows. This paper presents a novel application of an unsupervised neural network for clustering neural spike trains with transient responses. This network is constructed by incorporating projective clustering into an adaptive resonance type neural network (ART) architecture resulting in a PART neural network. Since comparisons are made between inputs and learned patterns using only a subset of the total number of available dimensions, …

A Synaptic Basis For Auditory-Vocal Integration In The Songbird, Eric E. Bauer, Melissa J. Coleman, Todd F. Roberts, Arani Roy, Jonathan F. Prather, Richard Mooney

WM Keck Science Faculty Papers

Songbirds learn to sing by memorizing a tutor song that they then vocally mimic using auditory feedback. This developmental sequence suggests that brain areas that encode auditory memories communicate with brain areas for learned vocal control. In the songbird, the secondary auditory telencephalic region caudal mesopallium (CM) contains neurons that encode aspects of auditory experience. We investigated whether CM is an important source of auditory input to two sensorimotor structures implicated in singing, the telencephalic song nucleus interface (NIf) and HVC. We used reversible inactivation methods to show that activity in CM is necessary for much of the auditory-evoked activity …

Thalamic Gating Of Auditory Responses In Telencephalic Song Control Nuclei, Melissa J. Coleman, Arani Roy, J. Martin Wild, Richard Mooney

WM Keck Science Faculty Papers

In songbirds, nucleus Uvaeformis (Uva) is the sole thalamic input to the telencephalic nucleus HVC (used as a proper name), a sensorimotor structure essential to learned song production that also exhibits state dependent responses to auditory presentation of the bird’s own song (BOS). The role of Uva in influencing HVC auditory activity is unknown. Using in vivo extracellular and intracellular recordings in urethane-anesthetized zebra finches, we characterized the auditory properties of Uva and examined its influence on auditory activity in HVC and in the telencephalic nucleus interface (NIf), the main auditory afferent of HVC and a corecipient of Uva input. …

Supplementary Figure 1, Melissa J. Coleman, Arani Roy, J. Martin Wild, Richard Mooney

WM Keck Science Faculty Papers

Supplemental data for "Thalamic Gating of Auditory Responses in Telencephalic Song Control Nuclei."

An Ecologically-Significant Range Extension For Hahn's Short-Tailed Fruit Bat (Carolllia Subrufa) In Southwestern Costa Rica, Donald A. Mcfarlane, Keith Christenson

WM Keck Science Faculty Papers

A range extension for Hahn's short-tailed fruit bat, Carollia subrufa, is reported which extends the distribution of the species from the Pacific Dry Forest into the Pacific Moist Forest ecoregion. This raises the possibility that the species may be more widely distributed in Costa Rica than currently supposed, adding almost 30,000 km² of potential range.

Spatial And Temporal Expression Of Vegetation And Atmospheric Variability From Stable Carbon And Nitrogen Isotope Analysis Of Bat Guano In The Southern United States, Christopher M. Wurster, Donald A. Mcfarlane, Michael I. Bird

WM Keck Science Faculty Papers

Stable isotopes of faeces contain information related to the animals feeding ecology. The use of stable isotope values from subfossil faeces as a palaeoenvironmental indicator depends on how faithfully the animal records their local environment. Here we present insectivorous bat guano δ¹³C and δ¹⁵N values from a precipitation gradient across the southern United States and northern Mexico to compare with local vegetation and climate. We find δ¹³C values to be an excellent predictor of expected C₄/CAM vegetation, indicating that the bats are non-selective in their diet. Moreover, we find bat guano δ …

The 19th Century Excavation Of Kent's Cavern, England, Donald A. Mcfarlane, Joyce Lundberg

WM Keck Science Faculty Papers

Between 1858 and 1880, William Pengelly developed revolutionary new techniques for the archeological and paleontological excavation of cave deposits. His work at Brixham Cave and Kent’s Cavern, England, yielded tens of thousands of specimens from the mid-Pleistocene to the Holocene, settled the intellectual debate over the co-existence of humans and extinct mammals, and accumulated an unparalleled resource for continued study. Although the Brixham Cave work was thoroughly summarized in print, Pengelly never published the plans of his much more thorough and extensive excavations at Kent’s Cavern. Here we present a reconstructed plan of the Pengelly excavations that we hope will …

Human Stick Balancing: Tuning Lèvy Flights To Improve Balance Control, Juan Luis Cabrera, John Milton

WM Keck Science Faculty Papers

State-dependent, or parametric, noise is an essential component of the neural control mechanism for stick balancing at the fingertip. High-speed motion analysis in three dimensions demonstrates that the controlling movements made by the fingertip during stick balancing can be described by a Lévy flight. The Lévy index, , is approximately 0.9; a value close to optimal for a random search. With increased skill, the index does not change. However, the tails of the Lévy distribution become broader. These observations suggest a Lévy flight that is truncated by the properties of the nervous and musculoskeletal system; the truncation decreasing as skill …

Synaptic Transformations Underlying Highly Selective Auditory Representations Of Learned Birdsong, Melissa J. Coleman, Richard Mooney

WM Keck Science Faculty Papers

Stimulus-specific neuronal responses are a striking characteristic of several sensory systems, although the synaptic mechanisms underlying their generation are not well understood. The songbird nucleus HVC (used here as a proper name) contains projection neurons (PNs) that fire temporally sparse bursts of action potentials to playback of the bird's own song (BOS) but are essentially silent when presented with other acoustical stimuli. To understand how such remarkable stimulus specificity emerges, it is necessary to compare the auditory-evoked responsiveness of the afferents of HVC with synaptic responses in identified HVC neurons. We found that inactivating the interfacial nucleus of the nidopallium …

An Unusual Lava Cave From Ol Doinyo Lengai, Tanzania, Donald A. Mcfarlane, Joyce Lundberg, Frederick Belton

WM Keck Science Faculty Papers

A new type of lava cave is described from the summit crater of Ol Doinyo Lengai, a unique active carbonatite volcano in Tanzania. This and other similar caves on Ol Doinyo Lengai are formed by thermal erosion and aqueous dissolution of otherwise solid spatter cones. Meteoritic water and endogenous condensates act to form speleothems of complex mineralogy up to 3 m in length. We propose the new classification of “polygenetic spatter cone cave”.

Guano, Donald A. Mcfarlane

WM Keck Science Faculty Papers

This is an encyclopedia article.

A New Megalonychid Sloth From The Late Wisconsinan Of The Dominican Republic, Elizabeth Rega, Donald A. Mcfarlane, Joyce Lundberg, Keith Christenson

WM Keck Science Faculty Papers

An unusually well preserved skull, mandible, and indisputably associated post-cranial elements of new sloth, Acratocnus (Miocnus), were recovered from a cave in Jaragua National Park, Dominican Republic. The animal died lying in a rimstone pool and was rapidly coated with a thin calcite patina. We have documented a late Wisconsinan age for this specimen by inorganic 14C radiometric dating of the patina, with supporting data on the carbon systematics of the speleothems in this cave. This sloth is described as a new species on the basis of the distinctive morphology and relative size of cranial and mandibular features. We consider …

A Middle Pleistocene Age And Biogeography For The Extinct Rodent Megalomys Curazensis From Curaçao, Netherlands Antilles, Donald A. Mcfarlane, Joyce Lundberg

WM Keck Science Faculty Papers

The extinct oryzomyine rodent Megalomys curazensis has been known from abundant but fragmentary remains on the island of Curaçao since 1959. Here we demonstrate an age of 130 000 to 400 000 years before present based on geomorphological context, and propose a biogeographical model for the genus.

A Late Quaternary Paleoecological Record From Caves Of Southern Jamaica, West Indies, Donald A. Mcfarlane, Joyce Lundberg, A.G. Fincham

WM Keck Science Faculty Papers

Studies of an unusual and diverse system of caves in coastal southern Jamaica have yielded a paleoclimatic record associated with a fossil vertebrate record that provides useful insights into the poorly documented paleoecology of latest Wisconsinan and Holocene Jamaica. Episodes of significantly increased precipitation during the Holocene have left characteristic deposits of speleothems, and have supported both faunal and archaeological communities that were dependent on these mesic conditions. Deposits of fossil bat guano preserved in the caves provide a δ¹³C record of alternating mesic and xeric climatic episodes that supports the interpretation of the faunal and archaeological record.

Synaptic Heterogeneity And Stimulus-Induced Modulation Of Depression In Central Synapses, John D. Hunter, John Milton

WM Keck Science Faculty Papers

Short-term plasticity is a pervasive feature of synapses. Synapses exhibit many forms of plasticity operating over a range of time scales. We develop an optimization method that allows rapid characterization of synapses with multiple time scales of facilitation and depression. Investigation of paired neurons that are postsynaptic to the same identified interneuron in the buccal ganglion of Aplysia reveals that the responses of the two neurons differ in the magnitude of synaptic depression. Also, for single neurons, prolonged stimulation of the presynaptic neuron causes stimulus-induced increases in the early phase of synaptic depression. These observations can be described by a …

Puerto Rican Karst - A Vital Resource, Ariel E. Lugo, Leopoldo Miranda Castro, Abel Vale, Tania Del Mar López, Enrique Hernández Prieto, Andrés García Martinó, Alberto R. Puente Rolón, Adrianne G. Tossas, Donald A. Mcfarlane, Tom Miller, Armando Rodríguez, Joyce Lundberg, John Thomlinson, José Colón, Johannes H. Schellekens, Olga Ramos, Eileen Helmer

WM Keck Science Faculty Papers

The limestone region of Puerto Rico covers about 27.5 percent of the island's surface and is subdivided into the northern, southern, and dispersed limestone areas. All limestone areas have karst features. The karst belt is that part of the northern limestone with the most spectacular surficial karst landforms. It covers 142,544 ha or 65 percent of the northern limestone. The karst belt is the focus of this publication, although reference is made to all limestone regions. The northern limestone contains Puerto Rico's most extensive freshwater aquifer, largest continuous expanse of mature forest, and largest coastal wetland, estuary, and underground cave …

A New Species Of Extinct Oryzomyine Rodent From The Quaternary Of Curaçao, Netherlands Antilles, Donald A. Mcfarlane, Adolphe O. Debrot

WM Keck Science Faculty Papers

An extinct new species of Oryzomyine rodent, known since 1936 from the cave of Grot van Hato on the island of Curaçao, is described from abundant new specimens collected from owl-pellet deposits at three localities on the island.

The Age Of The Woolly Rhino From Dream Cave, Derbyshire, Uk, Donald A. Mcfarlane, Joyce Lundberg, Derek C. Ford

WM Keck Science Faculty Papers

The Dream Cave woolly rhinoceros, Coelodonta antiquitatis, is a "classic" specimen of a "cold-stage" fossil fauna from central England. The find was illustrated and described by Dean William Buckland in his seminal tome Reliquiae Diluvianae (1823) during the first half of the 19th century, and made a significant contribution to the development of Buckland's views on the origin of extinct and extirpated fossil vertebrates. The report presents the first, albeit indirect, radiometric dates on the specimen, and argues that the animal fell into the cave just before 37,000 years BP, during the middle of Marine Isotope Stage 3 Interstadial (41 …

Biochemical And Genetic Conservation Of Fission Yeast Dsk1 And Human Srpk1, Zhaohua Irene Tang, Tiffany Kuo, Jenny Shen, Ren-Jang Lin

WM Keck Science Faculty Papers

Arginine/serine-rich (RS) domain-containing proteins and their phosphorylation by specific protein kinases constitute control circuits to regulate pre-mRNA splicing and coordinate splicing with transcription in mammalian cells. We present here the finding that similar SR networks exist in Schizosaccharomyces pombe. We previously showed that Dsk1 protein, originally described as a mitotic regulator, displays high activity in phosphorylating S. pombe Prp2 protein (spU2AF59), a homologue of human U2AF65. We now demonstrate that Dsk1 also phosphorylates two recently identified fission yeast proteins with RS repeats, Srp1 and Srp2, in vitro. The phosphorylated proteins bear the same phosphoepitope found in mammalian SR proteins. Consistent …

New Specimens Of Late Quaternary Extinct Mammals From Caves In Sanchez Ramirez Province, Dominican Republic, Donald A. Mcfarlane, Abel Vale, Keith Christenson, Joyce Lundberg, Gabriel Atilles, Stein Erik Lauritzen

WM Keck Science Faculty Papers

During the late Quaternary, the island of Hispaniola supported one of the most diverse mammalian faunas in the West Indies. Much of this diversity was lost to extinction in the past 100,000 years, but the timing of these events is poorly known. Here we report the paleontological findings of a multidisciplinary investigation of caves in the central Dominican Republic. These findings include new 'last occurrence' dates for the rodents Isolobodon portoricensis and Brotomys cf. voratus that take these genera to the dawn of the historic era; a first record of a last-interglacial sloth, and the first report of the upper …

Late Quaternary Fossil Mammals And Last Occurrence Dates From Caves At Barahona, Puerto Rico, Donald A. Mcfarlane

WM Keck Science Faculty Papers

Puerto Rico supported at least five genera of endemic terrestrial mammals in the late Quaternary, all of which are extinct. Whether these animals died out in the late Pleistocene, the mid-Holocene, or in post-Columbian time has not been established. This paper is the first attempt at radiometrically dating the 'last occurrences' of these taxa, together with the first unambiguous descriptions of localities reported by previous workers. Last occurrence dates for Nesophontes, Elasmodontomys and Heteropsomys are shown to be mid-Holocene and overlap with Amerindian occupation of the island. Acratocnus is known only from the late Pleistocene. No Puerto Rican taxon has …

Different Proctolin Neurons Elicit Distinct Motor Patterns From A Multifunctional Neuronal Network, Dawn M. Blitz, Andrew E. Christie, Melissa J. Coleman, Brian J. Norris, Eve Marder, Michael P. Nusbaum

WM Keck Science Faculty Papers

Distinct motor patterns are selected from a multifunctional neuronal network by activation of different modulatory projection neurons. Subsets of these projection neurons can contain the same neuromodulator(s), yet little is known about the relative influence of such neurons on network activity. We have addressed this issue in the stomatogastric nervous system of the crab Cancer borealis. Within this system, there is a neuronal network in the stomatogastric ganglion (STG) that produces many versions of the pyloric and gastric mill rhythms. These different rhythms result from activation of different projection neurons that innervate the STG from neighboring ganglia and modulate STG …

A Note On Sexual Dimorphism In Nesophontes Edithae (Mammalia: Insectivora), An Extinct Island-Shrew From Puerto Rico, Donald A. Mcfarlane

WM Keck Science Faculty Papers

The island-shrew, Nesophontes edithae Anthony 1916, Mean is the only Puerto Rican representative of the monogeneric family Nesophontidae.