Life Sciences Commons^™

Assessing Coral Reef Fish Population And Community Changes In Response To Marine Reserves In The Dry Tortugas, Florida, Usa, Jerald S. Ault, Steven G. Smith, James A. Bohnsack, Jiangang Luo, Natalia Zurcher, David B. Mcclellan, Tracy A. Ziegler, David E. Hallac, Matt Patterson, Michael W. Feeley, Benjamin I. Ruttenberg, John Hunt, Dan Kimball, Billy Causey

Biological Sciences

The efficacy of no-take marine reserves (NTMRs) to enhance and sustain regional coral reef fisheries was assessed in Dry Tortugas, Florida, through 9 annual fishery-independent research surveys spanning 2 years before and 10 years after NTMR implementation. A probabilistic sampling design produced precise estimates of population metrics of more than 250 exploited and non-target reef fishes. During the survey period more than 8100 research dives utilizing SCUBA Nitrox were optimally allocated using stratified random sampling. The survey domain covered 326 km², comprised of eight reef habitats in four management areas that offered different levels of resource protection: the …

Microbial Communities In Pre-Columbian Coprolites, Tasha M. Santiago-Rodriguez, Yvonne M. Narganes-Storde, Luis Chanlatte, Edwin Crespo-Torres, Gary A. Toranzos, Rafael Jiménez-Flores, Alice Hamrick, Raul J. Cano

Biological Sciences

The study of coprolites from earlier cultures represents a great opportunity to study an “unaltered” composition of the intestinal microbiota. To test this, pre-Columbian coprolites from two cultures, the Huecoid and Saladoid, were evaluated for the presence of DNA, proteins and lipids by cytochemical staining, human and/or dog-specific Bacteroides spp. by PCR, as well as bacteria, fungi and archaea using Terminal Restriction Fragment analyses. DNA, proteins and lipids, and human-specific Bacteroides DNA were detected in all coprolites. Multidimensional scaling analyses resulted in spatial arrangements of microbial profiles by culture, further supported by cluster analysis and ANOSIM. Differences between the microbial …

Milk Fat Globule Membrane Isolated From Buttermilk Or Whey Cream And Their Lipid Components Inhibit Infectivity Of Rotavirus In Vitro, K. L. Fuller, T. B. Kuhlenschmidt, M. S. Kuhlenschmidt, Rafael Jiménez-Flores, S M. Donovan

Dairy Science

Milk fat is encapsulated in a milk fat globule membrane (MFGM) that contains bioactive glycoproteins and glycolipids. The MFGM inhibits infectivity of rotavirus (RV), activity that has been attributed to its glycoprotein and carbohydrate components. However, previous studies of proteins and oligosaccharides in the MGFM have not accounted for all the bioactivity associated with the complete MFGM. The lipid fraction of the MFGM accounts for half of its composition by weight, and we postulate that this fraction should be tested by itself to determine if it plays a role in antiviral activity. Herein, the anti-RV activity of an organic extract …

Residential Summer Camp: A New Venue For Nutrition Education And Physical Activity Promotion, Alison K. Ventura, Barry A. Garst

Kinesiology and Public Health

Background

Millions of children attend residential summer camps each year. However, few studies have examined the potential of camps for obesity prevention efforts. Research in the domain of positive youth development has shown that camp programs as short as one week have both short- and long-term positive effects on self-esteem, self-efficacy and other youth outcomes. The objective of the present study was to highlight the potential of resident camps as promising venues for the promotion of healthy eating and physical activity behaviors in the children who attend.

Methods

Data for this study came from the American Camp Association 2007 Emerging …

Culturally Speaking: Options For Making Greek Yogurt, Phillip Tong

Dairy Science

No abstract provided.

Early Influences On The Development Of Food Preferences, Alison K. Ventura, John Worobey

Kinesiology and Public Health

The ability to perceive flavors begins in utero with the development and early functioning of the gustatory and olfactory systems. Because both amniotic fluid and breast milk contain molecules derived from the mother’s diet, learning about flavors in foods begins in the womb and during early infancy. This early experience serves as the foundation for the continuing development of food preferences across the lifespan, and is shaped by the interplay of biological, social, and environmental factors. Shortly after birth, young infants show characteristic taste preferences: sweet and umami elicit positive responses; bitter and sour elicit negative responses. These taste preferences …

Achieving The Triple Bottom Line In The Face Of Inherent Trade-Offs Among Social Equity, Economic Return, And Conservation, Benjamin S. Halpern, Carissa J. Klein, Christopher J. Brown, Maria Beger, Hedley S. Grantham, Sangeeta Mangubhai, Mary Ruckelshaus, Vivitskaia J. Tulloch, Matt Watts, Crow White, Hough P. Possingham

Biological Sciences

Triple–bottom-line outcomes from resource management and conservation, where conservation goals and equity in social outcomes are maximized while overall costs are minimized, remain a highly sought-after ideal. However, despite widespread recognition of the importance that equitable distribution of benefits or costs across society can play in conservation success, little formal theory exists for how to explicitly incorporate equity into conservation planning and prioritization. Here, we develop that theory and implement it for three very different case studies in California (United States), Raja Ampat (Indonesia), and the wider Coral Triangle region (Southeast Asia). We show that equity tends to trade off …

Editorial: The Nutrition Transition- The Same, But Different, Aydin Nazmi, C. Monteiro

Food Science and Nutrition

No abstract provided.

Rna Sequencing To Study Gene Expression And Single Nucleotide Polymorphism Variation Associated With Citrate Content In Cow Milk, A. Cánovas, G. Rincón, A. Islas-Trejo, R. Jiménez-Flores, A. Laubscher, J. F. Medrano

Dairy Science

The technological properties of milk have significant importance for the dairy industry. Citrate, a normal constituent of milk, forms one of the main buffer systems that regulate the equilibrium between Ca2+ and H+ ions. Higher-than-normal citrate content is associated with poor coagulation properties of milk. To identify the genes responsible for the variation of citrate content in milk in dairy cattle, the metabolic steps involved in citrate and fatty acid synthesis pathways in ruminant mammary tissue using RNA sequencing were studied. Genetic markers that could influence milk citrate content in Holstein cows were used in a marker-trait association study to …

Effects Of Addition Of Somatic Cells To Caprine Milk On Cheese Quality, D. Sánchez-Macías, A. Morales-Delanuez, A. Torres, L. E. Hernández-Castellano, R. Jiménez-Flores, N Castro, A. Argüello

Dairy Science

Milk quality criteria and limits for somatic cell count (SCC) established in many countries make it difficult to maintain SCC of bulk tank goat milk below the threshold, due to non-infection factors linked to goat physiology. The aim of this study was to objectively verify the effects of SCC on fresh caprine milk cheese. Somatic cells were recovered from pooled healthy goat milk, and added to low SCC raw or pasteurised goat milk. Miniature cheeses were made and evaluated after 1 and 7 d. Somatic cells had a major effect on lipolysis, increasing free fatty acids regardless of whether milk …

Marine Protected Areas And Resilience To Sedimentation In The Solomon Islands, B. S. Halpern, K. A. Selkoe, Crow White, S. Albert, S. Aswani, M. Lauer

Biological Sciences

The ability of marine protected areas (MPAs) to provide protection from indirect stressors, via increased resilience afforded by decreased impact from direct stressors, remains an important and unresolved question about the role MPAs can play in broader conservation and resource management goals. Over a five-year period, we evaluated coral and fish community responses inside and outside three MPAs within the Roviana Lagoon system in Solomon Islands, where sedimentation pressure from upland logging is substantial. We found little evidence that MPAs decrease impact or improve conditions and instead found some potential declines in fish abundance. We also documented modest to high …

Evaluating Tradeoffs Among Ecosystem Services To Inform Marine Spatial Planning, Sarah E. Lester, Christopher Costello, Benjamin S. Halpern, Steven D. Gaines, Crow White, John A. Barth

Biological Sciences

A central challenge for natural resource management is developing rigorous yet practical approaches for balancing the costs and benefits of diverse human uses of ecosystems. Economic theory has a long history of evaluating tradeoffs in returns from different assets to identify optimal investment strategies. There has been recent progress applying this framework to the delivery of ecosystem services in land use planning. However, despite growing national and international interest in marine spatial planning, there is a lack of parallel frameworks in the marine realm. This paper reviews an ecosystem service tradeoff analysis framework and provides a more comprehensive synthesis for …

Lifestyle Interventions To Reduce Obesity And Diabetes, Todd Alan Hagobian, Suzanne Phelan

Kinesiology and Public Health

The majority of US adults are overweight or obese, which is a primary risk factor for type 2 diabetes and other chronic diseases. Recent advances in behavioral treatment of obesity have produced significant short- and longterm weight losses that reduce the risk of type 2 diabetes and cardiovascular disease. This article reviews key components of effective behavioral treatment interventions, including diet, exercise, and behavioral and psychosocial strategies. The authors review newer treatment modalities that may enhance dissemination (Internet, smartphone) and discuss applications to clinical practice. Practitioners face multiple barriers to effectively delivering lifestyle interventions in today’s health care setting but, …

Traversing Swanton Road, 12th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Culturally Speaking: Deliver The Full Benefits Of Cultures, Phillip Tong

Dairy Science

No abstract provided.

A Socratic Method For Surveying Students’ Readiness To Study Evolution, William D. Stansfield

Biological Sciences

Before beginning a series of presentations on evolution, it would be prudent to survey the general level of students’ understanding of prerequisite basic concepts of reproduction, heredity, ontology, and phenotypic diversity so that teachers can avoid devoting time to well-known subjects of general knowledge and can spend more time on subjects that are unknown, forgotten, or misunderstood by most students. This article outlines a Socratic method for surveying and teaching to address these concerns.

Teaching Evolution & The Nature Of Science Via The History Of Debates About The Levels At Which Natural Selection Operates, William D. Stansfield

Biological Sciences

Students should not graduate from high school without understanding that scientific debates are essential components of scientific methodology. This article presents a brief history of ongoing debates regarding the hypothesis that group selection is an evolutionary mechanism, and it serves as an example of the role that debates play in correcting faulty ideas and stimulating new research in the pursuit of extending scientific knowledge.

Traversing Swanton Road, 11th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Paper And Toner Three-Dimensional Fluidic Devices: Programming Fluid Flow To Improve Point-Of-Care Diagnostics, Kevin M. Schilling, Daisy Jauregui, Andres W. Martinez

Chemistry and Biochemistry

We present a new method for fabricating three-dimensional paper-based fluidic devices that uses toner as a thermal adhesive to bond multiple layers of patterned paper together. The fabrication process is rapid, involves minimal equipment (a laser printer and a laminator) and produces complex channel networks with dimensions down to 1 mm. The devices can run multiple diagnostic assays on one or more samples simultaneously, can incorporate positive and negative controls and can be programmed to display the results of the assays in a variety of patterns. The patterns of the results can encode information, which could be used to identify …

Rescuing Acetylcholinesterase From Nerve Agent Inhibition: Protein Dynamics Driven Drug Discovery, Aiyana M. Emigh, Brian Bennion

STAR Program Research Presentations

Severe morbidity and mortality consequences result from irreversible inhibition of human acetylcholinesterase by organophosphates (OPs). Oxime-based reactivators are currently the only available treatments but lack efficacy in the central nervous system (CNS) where the most damage occurs. Computational docking and molecular dynamics (MD) simulations reveal complex structural barriers that may reduce oxime efficacy. These results may guide future drug designs of more effective countermeasures.

Optimizing Electrode Design For Microbial Fuel Cells Used For Wastewater Treatment, Lindsay Nichols, John A. Hogan

STAR Program Research Presentations

Microbial fuel cells (MFC) utilize bacteria to generate an electrical current that can be used in the decomposition of sludge and human urine. In a MFC there is an anode (for oxidation of organic compounds), cathode (reduction of oxygen or carbon dioxide), and a proton exchange membrane (PEM, allows protons to migrate); reduction-oxidation reactions between the anode and cathode produce a measurable current. Bacteria that are found in sludge can be used to produce electrons in a voltaic cell, but optimizing conditions for harnessing the energy is crucial to making a MFC efficient. Research has shown that the ratios of …

Fishing For Peptides, Kevin Nguyen, Heather Brewer, Ljiljana Pasa-Tolic

STAR Program Research Presentations

In the field of proteomics, samples come from an unlimited variety of sources depending on what the research goals are. During preparation for analysis by mass spectrometry (MS), there is a need to separate peptides from other molecules used in the digestion process. Solid Phase Extraction (SPE) is a common cleanup step used to capture peptides, allowing the researcher to remove unwanted chemicals (e.g. salts, denaturants, surfactants) which results in a sample that can be effectively analyzed by MS. For our testing procedures we performed an in solution digest of Shewanella oneidensis with trypsin, mimicking the preparation for membrane-bound peptides …

Race, Sexual Orientation And Gender Identity/Expression In Athletics, Nevin Caple, Jillian Ross, Camille O'Bryant, Lea Robinson, Alpha Alexander, Yolanda Jackson, Dora Dome

Kinesiology and Public Health

No abstract provided.

Detection Of Viable Microorganisms Using Propidium Monoazide, Erik J. Mcfarland, Adrian Ponce Dr.

STAR Program Research Presentations

Propidium monoazide (PMA) is a molecular tool used to assess viability of microorganisms. Currently, PMA is thought to discern viability through membrane permeability; PMA enters only membrane compromised cells, irreversibly crosslinks to theirDNAand precipitates theDNAout of solution, preventing it from being amplified during polymerase chain reaction (PCR). Using PMA on a sample of live and dead microorganisms results in only theDNAof living organisms being amplified and identified. Therefore, a comparison ofPCRresults with and without PMA allows one to determine the live fraction and total population, respectively.

Current literature provides conflicting evidence as to the effectiveness of the technique. Our research …

Disocvering Ionic Liquid Resistant Genes, Bree Person, Douglass Higgins, Michael Thelen

STAR Program Research Presentations

: Plant biomass is a rich source of sugars that can be converted to biofuels by engineered microbes. However, because the lignocellulose in biomass is insoluble in aqueous conditions and recalcitrant to enzymatic degradation, thermochemical treatment is required to break apart the lignin and cellulose polymers before sugars can be released. The most effective chemicals for doing this are known as ionic liquids, which are salts that are molten at temperatures below 100° C. Although these solvents have many unique properties that are ideal for solubilizing lignocellulose, they have been found to inhibit the growth of bacterial strains used to …

Using Stable Isotope Analysis Of Zooplankton To Document Trophic And Biogeochemical Changes In The San Francisco Estuary, Steven C. Westbrook, Julien Moderan

STAR Program Research Presentations

Zooplankton represent a vital link between phytoplankton and fish, like the endangered Delta Smelt. Human interferences (nitrates from waste water, flow alteration, invasive species introduction…) have altered the structure of the San Francisco Estuary (SFE) ecosystem. We use stable isotope analysis to improve our knowledge of the planktonic food web in the SFE and gain insights into its evolution over the past decades. We use the ratios of certain isotopes (Nitrogen, Carbon, Sulfur, etc.) in different species of zooplankton to tell us what it is feeding on as well as the trophic level it feeds in. My research focused on …