Life Sciences Commons^™

Ancient And Recent Demographic Events Influence Mitochondrial Dna Diversity In An Immigrant Basque Population, Michael Christopher Davis

Boise State University Theses and Dissertations

The Basques are an ancient people, considered by many anthropologists to represent the oldest extant European population. Because of this, they have been the subject of numerous sociological and biological investigations. The Basque Diaspora, a relatively recent demographic expansion of the Basque population, has until now been overlooked in molecular genetic studies. Samples were taken from 53 individuals with Basque ancestry in Boise, Idaho, and the mitochondrial DNA (mtDNA) sequence variation of the first and second hypervariable regions were determined. Thirty-six mtDNA haplotypes were detected in the sample. Comparing the genetic diversity in the Idaho sample with other Basque populations, …

Labile Soil Carbon Inputs Mediate The Soil Microbial Community Composition And Plant Residue Decomposition Rates, Marie-Anne De Graaff, Aimee T. Classen, Hector F. Castro, Christopher W. Schadt

Biology Faculty Publications and Presentations

• Root carbon (C) inputs may regulate decomposition rates in soil, and in this study we ask: how do labile C inputs regulate decomposition of plant residues, and soil microbial communities?

• In a 14 d laboratory incubation, we added C compounds often found in root exudates in seven different concentrations (0, 0.7, 1.4, 3.6, 7.2, 14.4 and 21.7 mg C g soil) to soils amended with and without ¹³C-labeled plant residue. We measured CO₂ respiration and shifts in relative fungal and bacterial rRNA gene copy numbers using quantitative polymerase chain reaction (qPCR).

• Increased labile C input …

Eighteen Microsatellite Loci Developed From Western Burrowing Owls (Athene Cunicularia Hypugaea), Brant C. Faircloth, Alexandra Title, Kevin Tan, Justin Welty, James R. Belthoff, Patricia Adair Gowaty

Biology Faculty Publications and Presentations

Western burrowing owls (Athene cunicularia hypugaea) are ground-dwelling owls distributed throughout western North America. Because of population declines, this species is considered endangered in Canada, and burrowing owls are listed as a species of conservation concern in states of the western USA. Korfanta et al. (2002) previously presented primers for seven microsatellite loci in burrowing owls. Parentage and relatedness studies require a larger number of markers for accuracy and precision. Here, we developed and characterized 18 additional microsatellite DNA loci, and we tested these loci in 23 individuals. The number of alleles per locus ranged from 2 to …

A Comparison Of Cumulative-Germination Response Of Cheatgrass (Bromus Tectorum L.) And Five Perennial Bunchgrass Species To Simulated Field-Temperature Regimes, Stuart P. Hardegree, Corey A. Moffet, Bruce A. Roundy, Thomas A. Jones, Stephen J. Novak, Patrick E. Clark, Frederick B. Pierson, Gerald N. Flerchinger

Biology Faculty Publications and Presentations

Cheatgrass (Bromus tectorum L.) has come to dominate millions of hectares of rangeland in the Intermountain western United States. Previous studies have hypothesized that one mechanism conferring a competitive advantage to this species is the ability to germinate rapidly at low temperatures in the fall, winter and spring and, therefore, initiate growth and establishment more rapidly than more desirable perennial bunchgrass species. In this experiment, we developed thermal-germination-response models for multiple seedlots of cheatgrass and five perennial grass species. We conducted sensitivity analysis on potentialcumulative- germination response to a 38-y simulation of field-variable conditions of seedbed temperature and moisture. …

The Use Of Genetics For The Management Of A Recovering Population: Temporal Assessment Of Migratory Peregrine Falcons In North America, Jeff A. Johnson, Sandra L. Talbot, Kurt K. Burnham, George K. Sage, Joseph W. Brown, Tom L. Maechtle, William S. Seegar, Michael A. Yates, Bud Anderson, David P. Mindell

Raptor Research Center Publications and Presentations

Background: Our ability to monitor populations or species that were once threatened or endangered and in the process of recovery is enhanced by using genetic methods to assess overall population stability and size over time. This can be accomplished most directly by obtaining genetic measures from temporally-spaced samples that reflect the overall stability of the population as given by changes in genetic diversity levels (allelic richness and heterozygosity), degree of population differentiation (F_ST and D_EST), and effective population size (N_e). The primary goal of any recovery effort is to produce a longterm self-sustaining …

Non-Native Salmonids Affect Amphibian Occupancy At Multiple Spatial Scales, David S. Pilliod, Blake R. Hossack, Peter F. Bahls, Evelyn L. Bull, Paul Stephen Corn, Grant Hokit, Bryce A. Maxell, James C. Munger, Aimee Wyrick

Biology Faculty Publications and Presentations

Aim The introduction of non-native species into aquatic environments has been linked with local extinctions and altered distributions of native species. We investigated the effect of non-native salmonids on the occupancy of two native amphibians, the long-toed salamander (Ambystoma macrodactylum) and Columbia spotted frog (Rana luteiventris), across three spatial scales: water bodies, small catchments and large catchments.

Location Mountain lakes at ≥ 1500 m elevation were surveyed across the northern Rocky Mountains, USA.

Methods We surveyed 2267 water bodies for amphibian occupancy (based on evidence of reproduction) and fish presence between 1986 and 2002 and modelled …

The Role Of Caspases In Alzheimer's Disease; Potential Novel Therapeutic Opportunities, Troy T. Rohn

Biology Faculty Publications and Presentations

Although apoptosis plays a critical role in molding the CNS into its final appearance and function, inappropriate activation of this pathway in the aging brain may contribute to neurodegeneration. In Alzheimer’s disease (AD), an overwhelming body of evidence supports the activation of apoptosis in general, and caspases specifically as an early event that may not only contribute to neurodegeneration but also promote the underlying pathology associated with this disease. Therefore, caspase inhibitors may provide an effective strategy for treating AD. However, despite the compelling evidence indicating a role for caspases in disease progression, chronic treatment with caspase inhibitors in animal …

GenHtr: A Tool For Comparative Assessment Of Genetic Heterogeneity In Microbial Genomes Generated By Massive Short-Read Sequencing, Gongxin Yu

Biology Faculty Publications and Presentations

Background: Microevolution is the study of short-term changes of alleles within a population and their effects on the phenotype of organisms. The result of the below-species-level evolution is heterogeneity, where populations consist of subpopulations with a large number of structural variations. Heterogeneity analysis is thus essential to our understanding of how selective and neutral forces shape bacterial populations over a short period of time. The Solexa Genome Analyzer, a next-generation sequencing platform, allows millions of short sequencing reads to be obtained with great accuracy, allowing for the ability to study the dynamics of the bacterial population at the whole genome …

The Expression Patterns Of Minor Fibrillar Collagens During Development In Zebrafish, Ming Fang, Jason S. Adams, B. Lane Memahhan, Raquel J. Brown, Julia Oxford

Biomolecular Research Center Publications and Presentations

Minor fibrillar collagens are recognized as the organizers and nucleators during collagen fibrillogenesis but likely serve additional functions. The minor fibrillar collagens include collagens type V and type XI. Mutations of collagen type V and XI can cause Ehlers Danlos, Stickler's, and Marshall's syndromes in human. We have characterized the spatiotemporal expression patterns of Col11a1, Col11a2, Col5a1 as well as Col5a3 in zebrafish embryos by in situ hybridization. Col5a1 is expressed in developing somites, neural crest, the head mesenchyme, developing cranial cartilage, pharyngeal arches and vertebrae. Col5a3 is detected in the notochord, mesenchyme cells in the eyes and lens. Both …

Foraging Strategies Are Related To Skull Morphology And Life History Traits Of Melanerpes Woodpeckers, David L. Leonard Jr., Julie A. Heath

Biology Faculty Publications and Presentations

Links between morphology and foraging strategies have been well established for many vertebrate groups. Foraging strategies of Melanerpes woodpeckers are especially variable, with at least six species being proficient flycatchers; the remainder of the better known species do not flycatch. Our objective was to examine variation in foraging tactics as it relates to skull morphology and other life history traits among these species to better understand the biology of these diverse woodpeckers. We measured eight skull characters from 241 individuals representing 19 species, but focused on eight species for which we had the most data. We used the log-geometric mean …

Agolohymena Aspidocauda Nov. Gen., Nov. Spec., A Histophagous Freshwater Tetrahymenid Ciliate In The Family Deltopylidae (Ciliophora, Hymenostomatia), From Idaho (Northwest U.S.A.): Morphology, Ontogenesis And Molecular Phylogeny, William A. Bourland, Michaela C. Strüder-Kypke

William Bourland

Morphology, ontogeny and the molecular phylogeny of Agolohymena aspidocauda nov. gen., nov. spec., a new freshwater tetrahymenid ciliate from Idaho, U.S.A, are described. The ontogeny and histophagous mode of nutrition are similar to those of Deltopylum rhabdoides Fauré-Fremiet and Mugard, 1946. The new genus is placed with Deltopylum in the resurrected family Deltopylidae Song & Wilbert, 1989. We emend the diagnostic features of the family to include division by polytomy, right and left somatic kineties extending into the preoral suture, crook-shaped or sigmoid adoral membranelles 1 and 2, markedly reduced adoral membranelle 3 and a tetrahymenid silverline pattern. The main …

Differences In Muscle Activation In The Lower Extremities While Performing Traditional Squats And Non-Traditional Squats, Christopher M. Scotten

Boise State University Theses and Dissertations

Purpose: To determine if muscle activation in the lower back and lower extremities differ when performing traditional squats compared to non-traditional (forward center of pressure on foot) squats. The erector spinae, hamstrings, quadriceps, adductor longus, gastrocnemius, and gluteus maximus muscles were monitored for differences in this study. There are several variations of the back squat and each variation may possibly target muscles differently. Determining if non-traditional squats leads to larger erector spinae muscle activation, which in turn may lead to more lower back fatigue and possible lower back injury is a major aim of this study. Participants: Thirteen healthy males …

Costs And Benefits Of Variable Nest Density In Burrowing Owls: Effects On Predation, Ectoparasites, Egg Yolk Hormones, And Productivity, Justin Lamar Welty

Boise State University Theses and Dissertations

Nesting density in birds is influenced by a number of factors including food availability, predation, and breeding site availability. As a result of a species’ nesting density, individuals incur certain costs and benefits related to predation rates, parasite levels, and productivity. I evaluated hypotheses related to these costs and benefits in burrowing owls (Athene cunicularia hypugaea) that nested within the Morley Nelson Snake River Birds of Prey National Conservation Area in southern Idaho. I calculated territory overlap, an index of nesting density, of actual nests by creating a 200m radius buffer around each nest and measuring the percentage …

Effects Of Old Nest Material On Occupancy And Reuse Of Artificial Burrows, And Breeding Dispersal By Burrowing Owls (Athene Cunicularia) In Southwestern Idaho, Corey S. Riding

Boise State University Theses and Dissertations

This thesis comprises two chapters describing my investigations of the breeding ecology of burrowing owls (Athene cunicularia) in southwestern Idaho. The first chapter details two experimental studies where I examined the effects of old nest material, primarily mammal dung, on the occupancy and reuse of artificial burrows by burrowing owls in 2004 and 2005. For burrows that owls had not used previously for nesting, adding material from actual nests did not induce occupancy. Thus, old nest material does not appear to function as a cue for burrow suitability. Removing old material from burrows that owls had used for …

Agolohymena Aspidocauda Nov. Gen., Nov. Spec., A Histophagous Freshwater Tetrahymenid Ciliate In The Family Deltopylidae (Ciliophora, Hymenostomatia), From Idaho (Northwest U.S.A.): Morphology, Ontogenesis And Molecular Phylogeny, William A. Bourland, Michaela C. Strüder-Kypke

Biology Faculty Publications and Presentations

Morphology, ontogeny and the molecular phylogeny of Agolohymena aspidocauda nov. gen., nov. spec., a new freshwater tetrahymenid ciliate from Idaho, U.S.A, are described. The ontogeny and histophagous mode of nutrition are similar to those of Deltopylum rhabdoides Fauré-Fremiet and Mugard, 1946. The new genus is placed with Deltopylum in the resurrected family Deltopylidae Song & Wilbert, 1989. We emend the diagnostic features of the family to include division by polytomy, right and left somatic kineties extending into the preoral suture, crook-shaped or sigmoid adoral membranelles 1 and 2, markedly reduced adoral membranelle 3 and a tetrahymenid silverline pattern. The main …

A Case Study On The Use Of Athletic Performance Strategies In An Elite Athlete’S Management Of Pancreatic Cancer, Brooke Elisabeth Harris

Boise State University Theses and Dissertations

In 2007, 11.7 million people in the United States were living with a cancer diagnosis. Specifically, 12 in every 100,000 Americans are diagnosed with pancreatic cancer each year. The five year survival rate of pancreatic cancer in the United States is only 5.6% (National Cancer Institute, 2007). In addition to traditional pharmacological treatments, physical activity has been increasingly used to help individuals successfully cope with cancer. One area that has not been studied extensively is the use of sport psychology techniques to help athletes cope with cancer. It is possible that these techniques, learned by elite athletes during their careers, …

An Examination Of Strength Training Practices In A Sample Of Varsity High School Athletic Programs In Idaho, Monica Lynn Reynolds

Boise State University Theses and Dissertations

The use of strength training, or resistance training to improve athletic performance, is growing among athletes of all ages. Currently, Idaho possesses no rules, regulations, and/or guidance for varsity high school athletics and strength training. PURPOSE: The purpose of this research was to explore the current practices for varsity level high school athletes and strength training. Specifically, examined were: who designs and implements strength training programs for varsity high school athletes, what kinds of training activities they do for their programs, and whether the responsible party or emphasis of strength training changes depending on the gender of the athletes. METHODS: …

Hip Power Asymmetry In Older Adult Fallers And Non-Fallers, Lauren Grace Mcdonald

Boise State University Theses and Dissertations

The purpose of this study was to determine if a difference exists in hip power asymmetry between community-dwelling older adult fallers and non-fallers. Hypothesis: fallers would be more asymmetrical than non-fallers. Participants: 21 non-fallers (10 females, 11 males) and 18 fallers (14 females, 4 males) over the age of 65 (76.5 ± 6.9yrs). Method: Isokinetic peak torque during flexion, extension, abduction, and adduction at four velocities was recorded as measures of leg power. Asymmetry equaled the percent of power difference between each leg. Data analysis: Differences in age, physical activity, height, weight, and BMI were assessed …

Present Effects Of Past Wildfires On Leaf Litter Breakdown In Stream Ecosystems, Peter Koetsier, Teresa R. B. Krause, Quenton M. Tuckett

Biology Faculty Publications and Presentations

We investigated the present effects from a 10-year-old wildfire on leaf litter breakdown rates in 3 headwater streams in central Idaho. These systems experienced a massive debris flow one year after the fire. Based on soil instability and burn patterns, we identified 3 stream conditions: unburned, burned only, and burned/scoured. We placed leaf bags containing willow leaves (Salix sp.) in each stream type and removed bags at various time intervals until all bags were collected 100 days after their introduction. Leaf material was dried and weighed, and decay rate coefficients were calculated. Macroinvertebrates colonizing the bags were enumerated and identified, …

Caspase-Cleaved Tar Dna-Binding Protein-43 In Parkinson’S Disease And Dementia With Lewy Bodies, Polina Kokoulina, Troy T. Rohn

Biology Faculty Publications and Presentations

Background: TAR DNA-binding protein-43 (TDP-43) proteinopathies are classified based upon the extent of modified TDP-43 and include a growing number of neurodegenerative diseases such as amyotrophic lateral sclerosis (ALS), frontotemporal lobar degeneration with ubiquitin immunoreactive, tau-negative inclusions (FTLD-U) and FTLD with motor neuron disease (FTLD-MND). Objective: The purpose of the study was to examine whether proteolytic modifications of TDP-43 are a relevant finding in Parkinson’s disease (PD) and dementia with Lewy Bodies (DLB). Methods: A novel site-directed caspase-cleavage antibody, termed TDP caspase-cleavage product antibody (TDPccp), was utilized based upon a known caspase-3 cleavage consensus site within TDP-43 at position 219. …

Reproductive Failure And The Stress Response In American Kestrels Nesting Along A Human Disturbance Gradient, Erin Hennegan Strasser

Boise State University Theses and Dissertations

Human disturbance may be an influential environmental stressor that affects birds across life stages. I examined whether external and endogenous factors including habitat type, habitat quality and individual quality (hereafter quality), or human disturbance affect American Kestrel reproductive success in southwestern Idaho. Specifically, I was interested in how these factors lead to nest failure or abandonment. I also investigated whether elevated corticosterone (CORT) concentrations mediate the relationships among explanatory variables and nest failure. As nestling kestrels may respond to stressors differently from adults, I examined whether conditions experienced during the nestling stage affected nestling American Kestrel (Falco sparverius) hypothalamic pituitary …

Idaho Bird Observatory: Research, Education, Conservation - 24/7, Elise Faike

Jay D. Carlisle

The Idaho Bird Observatory’s Lucky Peak bird monitoring station atop the foothills overlooking Boise is unique. During fall migration, it’s the only place in western North America that hosts some form of songbird or raptor research all day and all night—for downright fun 24/7!

Determining Intensity Levels For Selected Wii Fit Activities In College Aged Individuals, Joshua D. Grieser

Boise State University Theses and Dissertations

Introduction: Physical activity is important to the proper growth, development, and overall health of an individual. Current physical activity trends show declines in activity level throughout aging. To counteract inactivity many physical activity interventions have been implemented in different age groups and yet very little change in activity level has been seen. The Nintendo Wii® offers a popular technological intervention tool with its movement oriented game play. The physiological costs and intensity of the Nintendo Wii Fit® game have not been thoroughly researched, yet the Wii is being used as a physical activity tool in many arenas. Purpose: The purpose …

An Examination Of The Effectiveness Of An 8-Week Bikram Yoga Program On Mindfulness, Perceived Stress, And Physical Fitness, Zoe Louise Hewett

Boise State University Theses and Dissertations

Previous research has examined the effects of yoga on levels of mindfulness. The physical and psychological outcomes of participation in a Bikram yoga program have not been thoroughly researched, yet this type of yoga may be significant with regards to stress management and inactivity due to its unique method of practice. The purpose of this study was to observe the changes in the levels of mindfulness, perceived stress and physical fitness due to participation in an 8-week Bikram yoga program. It was hypothesized that participants would show improvements in mindfulness, perceived stress and physical fitness. Fifty-one males and females between …

Reproducibility Of Soil Moisture Ensembles When Representing Soil Parameter Uncertainty Using A Latin Hypercube–Based Approach With Correlation Control, Alejandro N. Flores, Dara Entekhabi, Rafael L. Bras

Alejandro N. Flores

Representation of model input uncertainty is critical in ensemble-based data assimilation. Monte Carlo sampling of model inputs produces uncertainty in the hydrologic state through the model dynamics. Small Monte Carlo ensemble sizes are desirable because of model complexity and dimensionality but potentially lead to sampling errors and correspondingly poor representation of probabilistic structure of the hydrologic state. We compare two techniques to sample soil hydraulic and thermal properties (SHTPs): (1) Latin Hypercube (LH) based sampling with correlation control and (2) random sampling from SHTP marginal distributions. A hydrology model is used to project SHTP uncertainty onto the soil moisture state …

Biology Of Cancer Class Metastasizes Knowledge, Chris Barbey, Madeline Connley, Ben Davis, Rachel Hightower, Jon Reeck, Caleb Sutherland, Cheryl L. Jorcyk

Service-Learning Program

Cancer, in all its forms, is a leading cause of death and serious disease. The pathology of cancer is very complicated. This combined with the fast pace of research and clinical innovation makes cancer biology a difficult topic, even for experts. As a consequence, patients who wish to gain a better understanding of cancer biology may find themselves stuck somewhere between the blog-a-sphere and technical journals. Cancer is a disease of miscommunication and confusion at the level of cellular signaling. In a sense, this theme of confusion extends to the experience of the patient. The body is in rebellion, perhaps …

Project Phit (Personal Health Intervention Team), Brooke Lester, Nathan Spencer, Zac Craig, Emily Flores, Vivian Soderholm-Difatte, Beth Gee, Emily Hemming

Service-Learning Program

Purpose: To empower campus employees to help them improve and maintain healthier lifestyles through increased physical activity and healthier eating habits. Learning goals: Students are expected to understand the Social Cognitive Theory and how it applies to interventions targeted at improving health behavior. Students will also learn and understand key issues related to health promotion with a diverse population.

Human Physiology Community Education, Sasha Volgamore, Kristen Mitchell

Service-Learning Program

The purpose of our project was to educate community members of all age groups to provide them with a basic knowledge of the fundamental workings of the human body, with specific emphasis on skeletal muscle physiology and cardiovascular physiology. It is our hope that members of our target audiences will use this information for future self-directed inquiries into human physiology with regard to their own bodies. Regardless of their age, everyone can decide to eat healthier and live a more active lifestyle. With the knowledge we provided the community, we hope they will appreciate that a healthy lifestyle is paramount …

Research Consortium Scholar Lecture: Off The Couch And Into The Gym—Women And Physical Activity, Lynda B. Ransdell

Lynda Ransdell

Researchers have made progress identifying women’s physical activity participation levels and preferences. However, we have a long way to go to develop programs that stimulate women’s long-term participation in physical activity. The primary focus of Dr. Lynda Ransdell’s 2010 Research Consortium Scholar Lecture is to trace key recommendations for increasing physical activity in women across the age spectrum. In addition, she will compare and contrast the experiences of sedentary women with active and athletic women. Specifically, this presentation will examine sedentary, active, and athletic females across the developmental spectrum (from the adolescent to the older adult) and discuss strategies for …

Effects Of Small Increases In Corticosterone Levels On Morphology, Immune Function, And Feather Development, Michael W. Butler, Lynda L. Leppert, Alfred M. Dufty Jr.

Biology Faculty Publications and Presentations

Stressors encountered during avian development may affect an individual’s phenotype, including immunocompetence, growth, and feather quality. We examined effects of simulated chronic low-level stress on American kestrel (Falco sparverius) nestlings. Continuous release of corticosterone, a hormone involved in the stress response, can model chronic stress in birds. We implanted 13-d-old males with either corticosterone-filled implants or shams and measured their growth, immune function, and feather coloration.We found no significant differences between groups at the end of the weeklong exposure period in morphometrics (mass, tarsus, wing length, and asymmetry), immunocompetence (cutaneous immunity, heterophil/lymphocyte ratio, and humoral immunity), or feather …