Life Sciences Commons^™

Determining Critical Fall Height For Bermudagrass Grown On Sand And Native Soil Root Zones, Taylor L. Williams

Masters Theses

Surface hardness is typically measured using a Clegg Impact Soil Tester (ASTM F355-D), but recent trends in sports turf are to use the F355-E missile as a potential alternative, because it may provide a more meaningful measurement. Forty traffic events were applied to ‘Tifway’ bermudagrass grown in an ASTM constructed sand root zone and a silt loam soil on the Center for Athletic Field Safety at the University of Tennessee. An F355-E was used to measure head injury criteria (HIC) for both root zones after every eight traffic events. Head injury criteria values were regressed to varying drop heights to …

Identifying Drought Tolerance Traits In Tennessee Soybean Genotypes: Recovery From Severe Water Deficit Stress, Samuel W. Purdom

Masters Theses

Ninety-four percent of U.S. grown soybeans are produced under rainfed conditions with intermittent droughts occurring late in the season during reproductive growth stages. Due to the temporary nature of drought, the ability of a crop to survive and recover effectively from water deficit stress is important for ensuring yield stability. In 2019 and 2020, two greenhouse experiments and two field studies were conducted to screen eleven soybean genotypes for transpiration response and recovery from water deficit stress and high vapor pressure deficit (VPD). In the first greenhouse study, soybean plants were grown in pots sealed to prevent evaporation and plants …

Modeling Emergence Of Annual Bluegrass (Poa Annua L.) In Hybrid Bermudagrass [C. Dactylon (L.) Pers. X C. Transvaalensis Burtt-Davy], Dallas Rose Taylor

Masters Theses

Annual bluegrass (Poa annua L.; ABG) is a troublesome weed of turfgrass systems. A model to predict ABG emergence patterns could aid in timing measures to control ABG. Field research was initiated in January 2019 at the East Tennessee AgResearch & Education Center (ETREC) (Knoxville, TN) to better understand environmental conditions associated with ABG emergence. Plots (1 m²) included both hybrid bermudagrass [C. dactylon (L.) Pers. x C. transvaalensis Burtt-Davy, cv. ‘Tifway’, at a 1.5 cm cutting height] and bare soil. Emerged ABG inside a 1000 cm² area in the center of each plot was …

Association Between Stream Impairment By Mercury And Superfund Sites In The Conterminous Usa, Karessa L. Manning

Masters Theses

Mercury is a natural element that can cause harm to the brain, heart, kidneys, lungs, and immune system, especially to fetuses developing in the womb. Many natural and anthropogenic factors contribute to mercury in the environment, such as geologic deposits, landfills, gold and silver mining operations, cement production, and atmospheric deposition. Mercury has been identified as a contaminant of concern at many National Priority List (NPL) sites, however, studies on contamination at NPL sites are often only conducted on a local level. This study was to analyze the potential connection between mercury-contaminated NPL sites and the presence of mercury impaired …

Investigating Microbial Genes Involved In Plant Colonization And The Effects On Plant Microbiome Assembly, David Grant

Masters Theses

The use of chemical fertilizers and pesticides has had negative impacts on ecological systems and alternatives will be needed to both enhance agricultural production and remediate waste that has accumulated via fertilizer use. A promising alternative to tackle both problems utilizes beneficial organisms in microbial communities associated with plants, which are known as bioinoculants. However, the benefits of bioinoculants are inconsistent in field application and require more research in order to harness them in ways to make them a suitable replacement for chemical fertilizers. Here, I investigate characteristics required to enhance bioinoculant efficiency, including mechanisms required to increase microbial colonization …

Patterns And Mechanisms Of Intraspecific Trait Variation Across Thermal Gradients In A Marine Gastropod, Andrew R. Villeneuve

Masters Theses

As the earth’s climate changes due to anthropogenic emissions, it has increasingly become an imperative within the ecological community to understand existing species adaptations to climate change. Much focus has been paid to how a species might react to climate change, but the role of locally adapted traits and responsible environmental mechanisms have received less attention. Quantifying how sublethal (e.g. growth rates) and lethal (e.g. thermal tolerance) trait performance vary between populations can thus improve our understanding of how populations, and the entire species, will react to climate change. Here, I quantified the spatial patterns of performance of several traits …

Investigating Structural Proteins By Light Scattering, Uma Nudurupati

Masters Theses

This thesis evaluates the organization of the structural proteins, Human Gamma D crystallin and Collagen type II, into higher-order structures using light scattering. Specifically, it evaluates the natures of incipient aggregation in Human Gamma D crystallin and the nature of its interactions with CAPEGn, an electrostatic blocker. Additionally, this thesis evaluates whether Collagen type II growth kinetics follows Classical nucleation theory.

Evaluation Of Environmental Factors Influencing American Marten Distribution And Density In New Hampshire, Donovan Drummey

Masters Theses

Though the American marten (Martes americana) is widely distributed across northern North America, habitat use and population abundance vary widely across the range. Due to its status as a furbearer, the species has been extensively researched, resulting in a large body of knowledge about the species’ ecology, distribution, and abundance, as well as drivers of population structure and dynamics. More recently, marten research has shifted focus to genetics, habitat associations, and estimation of population state variables. The rapid increase in estimation of states such as occupancy, abundance, and density has likely been driven by the increasing accessibility of …

Applying Ecological Theory To Amphibian Populations To Determine If Wood Frogs (Lithobates Sylvaticus) Are Ideal And Free When Selecting Breeding Habitat, Taylor M. Braunagel

Masters Theses

Amphibian populations are declining globally due to a litany of factors including pollution, disease, climate change, and most importantly, habitat destruction. As most amphibian life histories involve their populations being recruitment limited, focusing on the mechanism behind breeding habitat selection will reveal useful cues that managers may use to increase abundance and breeding success. Though there are many theoretical models that describe the distribution of animals in response to a resource, the ideal free distribution (IFD) theory has not yet been applied to amphibian settling decisions. Through this application of the IFD, I have found that a population of wood …

Evaluation Of Lake Sturgeon (Acipenser Fulvescens) Spawning Success On An Artificial Reef Constructed In The Kalamazoo River, Michigan, Jason P. Lorenz

Masters Theses

Since lake sturgeon Acipenser fulvescens monitoring began on the Kalamazoo River in 2009, there has been no documentation of survival past the egg stage. Spawning has occurred directly below Calkins Dam and, in 2016, an artificial spawning reef was constructed 275-m downstream to improve habitat and increase survival to the larval stage. The site was monitored with egg mats and larval drift nets to document evidence of successful natural reproduction of lake sturgeon one year prior to construction (2016) and three years post-construction of the artificial reef (2017-2019). Fertilized lake sturgeon eggs were captured all four years of the study …

Fecal Findings: Investigating Eastern Massasauga Rattlesnake Diet Using Dna Metabarcoding, Alyssa Swinehart

Masters Theses

Characterizing the diet of imperiled species using minimally invasive methods is crucial to understanding their conservation requirements. DNA metabarcoding methods have been used to characterize the diet primarily in mammalian systems, while reptiles are heavily underrepresented in this literature. Here, we apply a DNA metabarcoding approach to study the diet of the eastern massasauga rattlesnake (Sistrurus catenatus); a Federally Threatened snake found throughout the Great Lakes Region. Eighty-three fecal samples collected across 10 different massasauga populations located in Michigan were sequenced. We use universal metazoan primers and develop a host-specific oligonucleotide blocker to uncover the full potential diet …

Use Of Imaging Flow Cytometry To Assess The Hematology Of Eastern Massasauga Rattlesnakes (Sistrurus Catenatus), Jennifer H. Kovach

Masters Theses

The federally threatened eastern massasauga rattlesnake is faced with many threats, including the newly recognized snake fungal disease. Unfortunately, the immune response to the disease is unknown. Leukocyte profiles are used as health assessment tools for many species, and imaging flow cytometry can be used as an application to characterize leukocyte profiles. Our goal was to use imaging flow cytometry to identify leukocyte profiles of eastern massasauga rattlesnakes and determine differences in profiles between sexes, reproductive status, ages, location, and individuals with clinical signs of snake fungal disease. Blood samples from 201 individuals were collected from ten locations throughout the …

Spatial And Demographic Patterns Of Two Threatened Turtle Species In An Urban Environment, Carly E. Brouwers

Masters Theses

Urban development is a global threat to native wildlife. The process of urbanization reduces and degrades the useable habitat of a region, and creates novel “urban ecosystems” that possess new threats and stressors to local species. Turtles are one of the most threatened vertebrate groups worldwide, and are particularly at risk of decline in urban ecosystems due to reduced nesting success, increased road mortality events, altered movement patterns, and increased predation rates. Eastern box and Blanding’s turtles are two at-risk turtle species in the state of Michigan, USA, primarily due to land use change. Presently, there are urban populations of …

Effects Of A Circadian Mutation On Adult Neurogenesis, Michael Bahiru

Masters Theses

Rotating shift work, irregular sleep patterns and jetlag disrupt circadian rhythms, induce or aggravate disease, and produce deficits in cognitive function. Internal misalignment, a state in which abnormal phase relationships prevail between and within organs, is widely proposed to account for these adverse effects of circadian disruption. This hypothesis has been difficult to test because phase shifts of the entraining environmental cycle lead to transient desynchrony. Thus, it remains possible that phase shifts, regardless of internal desynchrony, account for adverse effects of circadian disruption. I have used the duper mutant hamster, whose locomotor activity rhythms re-entrain 5-fold faster than wild …

Trait Variation And Long-Term Population Dynamics Of The Invasive Alliaria Petiolata (Garlic Mustard) Across Three Microhabitats In Its Invaded Range, Laura Hancock

Masters Theses

Long-term population dynamics across heterogeneous environments can be a major factor in determining species’ ability to expand their ranges and persist in novel environments. Whether and how the relative performance of populations in different microsites over time impacts invasion into new microsites is poorly understood. Though largely restricted to disturbed semi-shaded microhabitats in its home range, the invasive herb Alliaria petiolata (garlic mustard) successfully invades intact forest understories – a novel microhabitat – in its introduced range, where it is known to impact above and below ground community composition. To test the hypothesis that source-sink metapopulation dynamics may be promoting …

Studies On High-Throughput Single-Neuron Rna Sequencing And Circadian Rhythms In The Nudibranch, Berghia Stephanieae, Thi Bui

Masters Theses

One of the goals of neuroscience is to classify all of the neurons in the brain. Neuronal types can be defined using a combination of morphology, electrophysiology, and gene expression profiles. Gene expression profiles allow differentiation between cells that share similar characteristics. Leveraging the advantage of Berghia stephanieae (Gastropoda; Nudibranchia), which has around 28,000 neurons, I constructed high-throughput single-neuron transcriptomes for its whole brain. I produced a single-cell dissociation protocol and a custom data analysis pipeline for data of this nature. Around 129,000 cells were collected from 18 rhinophore ganglia and 20 circumesophageal ring ganglia (brain), consisting of the cerebropleural, …

Predator Scent And Presence Alter Mammal Assemblages In The Missouri Ozarks, Usa, Cara Jean Yocom-Russell

Masters Theses

"Species that are vulnerable to predation exhibit a host of behavioral and physiological adaptations toward the avoidance of this outcome: Heightened awareness of surroundings through visual, olfactory, and auditory senses are common ways in which these species avoid detection by predators. While links between direct predator-prey relationships are well established, less is known about how predators can shape overall community structure or the populations of secondary or less frequently consumed prey items. As humans expand into rural areas, the frequency of wildlife conflicts rises. In response, humans look to prevent these events with a variety of methods. One such method …

The Gene Expression Patterns Of Phanerochaete Chrysosporium And Trametes Versicolor On Diverse Lignocellulosic Feedstocks, Noor Osama Alabbasi

Masters Theses

Plant biomass is considered to be an important future starting material for fuels and chemicals, thereby decreasing our reliance on fossil fuels. While direct combustion continues to be a source of fuel, the generation of liquid fuels from plant biomass for transportation has proven to be challenging. Among the limiting factors for conversion of this material to biofuels is the recalcitrant nature of lignocellulose, the primary component of non-starch plant biomass. A strategy to overcome this dilemma is to directly or indirectly use the enzymes from white-rot fungi, which have evolved a unique ability to deconstruct lignocellulose. However, the biochemical …

In Vitro And In Vivo Response To A Novel Borophosphate Bioactive Glass, Nada Abokefa

Masters Theses

"Bioactive glasses have been widely used in several biomedical and tissue engineering applications since the late 1960s. Numerous families of bioactive glasses have emerged over the years, with each having its own advantage and disadvantage. One concern common to all families is that most bioactive glasses create a basic or acidic environment when degraded and, therefore, are toxic for cells. Recently, there has been an increased interest in borophosphate bioactive glass (BPBGs) because of their neutral pH, release of therapeutic ions, and biodegradable properties. Despite the growing interest, there is little reported on the bioactivity of BPBGs. The biological effects …

Neural Network Supervised And Reinforcement Learning For Neurological, Diagnostic, And Modeling Problems, Donald Wunsch Iii

Masters Theses

“As the medical world becomes increasingly intertwined with the tech sphere, machine learning on medical datasets and mathematical models becomes an attractive application. This research looks at the predictive capabilities of neural networks and other machine learning algorithms, and assesses the validity of several feature selection strategies to reduce the negative effects of high dataset dimensionality. Our results indicate that several feature selection methods can maintain high validation and test accuracy on classification tasks, with neural networks performing best, for both single class and multi-class classification applications. This research also evaluates a proof-of-concept application of a deep-Q-learning network (DQN) to …

Development Of Fluorescence Microscopy Approaches To Study Subcellular Protein Transport And Enzymatic Activity, Anchal Singh

Masters Theses

Understanding the subcellular localization of proteins and their activity is important in understanding their normal function in eukaryotic cells. Fluorescence cellular imaging techniques can selectively and sensitively visualize subcellular biochemistry. Using this approach, two different methods were employed in this thesis. The first focused on studying protein import into peroxisome and the other on monitoring the activity of an endoplasmic reticulum (ER)-localized enzyme, human carboxylesterase 1 (CES1).

Peroxisomes are mainly known as the center for long chain fatty acid b-oxidation as well as the production and detoxification of hydrogen peroxide. Proteins which are needed in the peroxisomes are encoded in …

Genetic Relatedness Can Alter The Strength Of Plant-Soil Feedbacks, Kelly M. Clark

Masters Theses

Intraspecific variation may play a key role in understanding the relationships between plants and their interactions with soil microbial communities. The effects that soil-microbes have on individuals can venerate variation across individuals in their responsiveness. I explored how relatedness alters plant-soil feedbacks in established Solidago altissima clones grown in a common garden. Seedlings of known parentage were inoculated with soils from the maternal, paternal, or unrelated clones and compared to autoclaved control inocula. I found that the soil inocula generated from S. altissima had an overall negative effect of seedling biomass. Furthermore, seedlings inoculated with maternal or paternal soils experienced …

Preclassic Cultural Eutrophication Of Lake Petén Itzá, Lowland Guatemala, By The Early Maya Of Nixtun-Ch'ich', Brooke A. Birkett

Masters Theses

"Paleolimnological evidence indicates the ancient Maya transformed lowland terrestrial ecosystems by felling forest vegetation to construct large civic-ceremonial centers and expand agriculture. The effects of prehistoric Maya land alterations on lake trophic status, however, remain poorly understood. We analyzed a 515-cm-long sediment core from Lake Petén Itzá, lowland Guatemala, to infer paleoenvironmental changes resulting from Maya occupation of the riparian archaeological site of Nixtun-Ch'ich'. Substantial increases in charcoal and fecal stanol concentrations indicate Maya occupation of the Candelaria Peninsula by the late Early Preclassic period beginning ca. 1400 cal yr Before the Common Era (hereafter BCE), despite scant archaeological evidence …

The Validation Of Predicted Biological Age Of Drosophila Melanogaster From Combined Statistical Modeling, Lauren Francis

Masters Theses

"Sleep is essential for maintaining a healthy body and mind and is associated with aging and aging related diseases. There are individual differences in fly as well as human sleep behavior and lifespan. Between and within individuals, sleep varies in characteristics including consolidation, rhythmicity, continuity, duration, and more. Various evidence in the literature suggests there are many molecular pathways involved with aging and they may be different for individuals. Our research is interested in a possible restorative mechanism of sleep and the ramifications of that mechanism to aging. We have developed two predictive models of aging using the fruit fly …

Spatiotemporal Observations Of Water Stress In Kansas Winter Wheat And Corn From Remotely Sensed Evapotranspiration And Ndwi, Lindi Diane Oyler

Masters Theses

"Optimizing water use is a growing concern, especially in agricultural communities where water use is high. An important challenge in agricultural water optimization is knowing when and where crop water stress is occurring, particularly on large scales where in-situ measurements are no longer practical to obtain. In an effort to combat this challenge, this study utilizes remotely sensed evapotranspiration (ET) and Normalized Difference Water Index (NDWI) to evaluate the responses of integrated satellite datasets to water-stressed conditions over fields of irrigated corn, irrigated winter wheat, and rainfed winter wheat from 2007 to 2017 in southwestern Kansas. Using two different ET …

Genome-Wide Characterization Of Lateral Organ Boundaries Domain Genes In Sunflower (Helianthus Annuus L.), Saleh M. Aljurbua

Masters Theses

Lateral Organ Boundaries (LBD) gene family encodes transcription factors found only in plants with essential roles in growth, development, and response to biotic and abiotic factors. The sunflower (Helianthus annuus L., Asteraceae family) LBD genes were studied using different in silico and phylogenetic approaches including four major steps: gene identification, phylogenic analysis, structural analysis, and expression analysis. Sixty-four sunflower LBD genes (HaLBDs) were identified using query search of all Arabidopsis LBD genes against sunflower genome (version r1.2) followed by LBD domain sequence verification. A phylogenetic tree was reconstructed using MEGA-X program. The identified genes were phylogenetically classified into two main …

Immediate Response Of Black Basses To Dam Removal Is Determined By Habitat Preference, Reuben Frey

Masters Theses

Dams affect the abundance of fish species in lotic systems by altering flow regime and available physical habitat. Removal of dams may mitigate these effects and generate a change in species abundance and fish community structure. Understanding the effects of dam removal on gamefish species is essential in making management decisions. I investigated how populations of Smallmouth Bass (Micropterus dolomieu), Spotted Bass (M. punctulatus), and Largemouth Bass (M. salmoides) were affected by the presence and removal of two low-head dams in a Midwestern river system. I used data collected during fall and spring from …

Effects Of Emerging Contaminants On Centrarchidae And Catostomidae In Midwestern Rivers: A Multiple Biomarker Approach, Camden Garret Nix

Masters Theses

Natural habitats of fish are gradually declining due to land use and pollution caused by industrial wastes, intensive agriculture and contamination from sewage systems. The United States has 14,780 wastewater treatment facilities that discharge effluent into navigable waters, and in some cases these discharge waters represent a considerable proportion of the water system flow. These activities make it critical to discern the effects of pollutants that are entering our waterways at a consistent rate, such as 17β-estradiol (E2) and nickel, on aquatic organisms. To determine the effects of 17β-estradiol on endocrine disruption in fish, Bluegill Sunfish (Lepomis macrochirus) …

Effects Of Wastewater Effluent On Fish Fin Morphology Of Larval Fathead Minnows (Pimephales Promelas) And Swimming Performance Of Smallmouth Buffalo (Ictiobus Bubalus), Seth Michael Bogue

Masters Theses

The Sangamon River flows across central Illinois and is mostly free flowing except in the city of Decatur where it is impounded to form Lake Decatur. The Sanitary District of Decatur (SDD) is located approximately three miles downstream of the Lake Decatur dam. For a significant portion of the year, the stretch of the Sangamon River downstream of SDD is dominated by effluent due to limited discharge from the Lake Decatur dam. This has resulted in heavy nutrient loading, most notably phosphorus, and elevated levels of nickel and other compounds in the downstream section of the river. Smallmouth buffalo ( …

The Relationship Between Relative Muscular Strength And Joint Mobility In Firefighters, Samuel C. Nozicka

Masters Theses

Firefighters job requirements consist of running upstairs, climbing ladders, ceiling breach and pull, carrying equipment, forcible entry, dragging hoses, raising ladders, and rescue of patrons all while wearing heavy protective equipment that limits their mobility (Park et al., 2015). The purpose of this study was to examine the relationship between relative strength and mobility within the population of firefighters. The subjects were volunteers consisting of twelve male firefighter ranging in age from 25-52 with the mean age of 37.7 ± 7.7 years. Leighton Flexometer was used to measure joint range of motion (ROM) in different active movement patterns (Leighton, 1966). …