Life Sciences Commons^™

“Everyday” Knowledge And A New Paradigm Of Animal Research, David Fraser, Jeffrey M. Spooner, Catherine A. Schuppli

David Fraser, PhD

Commentary on Marino and Allen (2017) The Psychology of Cows

International Consensus Principles For Ethical Wildlife Control, Sara Dubois, Nicole Fenwick, Erin A. Ryan, Liv Baker, Sandra E. Baker, Ngaio J. Beausoleil, Scott Carter, Barbara Cartwright, Federico Costa, Chris Draper, John Griffin, Adam Grogan, Gregg Howald, Bidda Jones, Kate E. Littin, Amanda T. Lombard, David J. Mellor, Daniel Ramp, Catherine A. Schuppli, David Fraser

David Fraser, PhD

Human–wildlife conflicts are commonly addressed by excluding, relocating, or lethally controlling animals with the goal of preserving public health and safety, protecting property, or conserving other valued wildlife. However, declining wildlife populations, a lack of efficacy of control methods in achieving desired outcomes, and changes in how people value animals have triggered widespread acknowledgment of the need for ethical and evidence-based approaches to managing such conflicts. We explored international perspectives on and experiences with human–wildlife conflicts to develop principles for ethical wildlife control. A diverse panel of 20 experts convened at a 2-day workshop and developed the principles through a …

Act On The Registration And Evaluation Of Chemicals (K-Reach) And Replacement, Reduction Or Refinement Best Practices, Soojin Ha, Troy Seidle, Kyung-Min Lim

Troy Seidle, PhD

Objectives - Korea’s Act on the Registration and Evaluation of Chemicals (K-REACH) was enacted for the protection of human health and the environment in 2015. Considering that about 2000 new substances are introduced annually across the globe, the extent of animal testing requirement could be overwhelming unless regulators and companies work proactively to institute and enforce global best practices to replace, reduce or refine animal use. In this review, the way to reduce the animal use for K-REACH is discussed. Methods - Background of the enforcement of the K-REACH and its details was reviewed along with the papers and regulatory …

Mental Stress From Animal Experiments: A Survey With Korean Researchers, Minji Kang, Ahram Han, Da-Eun Kim, Troy Seidle, Kyung-Min Lim, Seungjin Bae

Troy Seidle, PhD

Animal experiments have been widely conducted in the life sciences for more than a century, and have long been a subject of ethical and societal controversy due to the deliberate infliction of harm upon sentient animals. However, the harmful use of animals may also negatively impact the mental health of researchers themselves. We sought to evaluate the anxiety level of researchers engaged in animal use to analyse the mental stress from animal testing. The State Anxiety Scale of the State-Trait Anxiety Inventory (STAI) was used to evaluate how researchers feel when they conduct animal, as opposed to non-animal, based experiments …

Successful Enrichment And Recovery Of Whole Mitochondrial Genomes From Ancient Human Dental Calculus, Andrew T. Ozga, Maria A. Nieves-Colon, Tanvi P. Honap, Krithivasan Sankaranarayanan, Courtney A. Hofman, George R. Milner, Cecil M. Lewis Jr., Anne C. Stone, Christina Warinner

Andrew Ozga

Objectives

Archaeological dental calculus is a rich source of host‐associated biomolecules. Importantly, however, dental calculus is more accurately described as a calcified microbial biofilm than a host tissue. As such, concerns regarding destructive analysis of human remains may not apply as strongly to dental calculus, opening the possibility of obtaining human health and ancestry information from dental calculus in cases where destructive analysis of conventional skeletal remains is not permitted. Here we investigate the preservation of human mitochondrial DNA (mtDNA) in archaeological dental calculus and its potential for full mitochondrial genome (mitogenome) reconstruction in maternal lineage ancestry analysis.

Materials and …

Origins Of An Unmarked Georgia Cemetery Using Ancient Dna Analysis, Andrew T. Ozga, Raul Y. Tito, Brian M. Kemp, Hugh Matternes, Alexandra J. Obregon-Tito, Leslie Neal, Cecil M. Lewis Jr.

Andrew Ozga

Determining the origins of those buried within undocumented cemeteries is of incredible importance to historical archaeologists and, in many cases, the nearby communities. In the case of Avondale Burial Place, a cemetery in Bibb County, Georgia, in use from 1820 to 1950, all written documentation of those interred within it has been lost. Osteological and archaeological evidence alone could not describe, with confidence, the ancestral origins of the 101 individuals buried there. In the present study, we used ancient DNA extraction methods in well-preserved skeletal fragments from 20 individuals buried in Avondale Burial Place to investigate the origins of the …

Comparison Of Two Ancient Dna Extraction Protocols For Skeletal Remains From Tropical Environments, Maria A. Nieves-Colon, Andrew T. Ozga, William J. Pestle, Andrea Cucina, Vera Tiesler, Travis W. Stanton, Anne C. Stone

Andrew Ozga

Objectives

The tropics harbor a large part of the world's biodiversity and have a long history of human habitation. However, paleogenomics research in these climates has been constrained so far by poor ancient DNA yields. Here we compare the performance of two DNA extraction methods on ancient samples of teeth and petrous portions excavated from tropical and semi‐tropical sites in Tanzania, Mexico, and Puerto Rico (N = 12).

Materials and Methods

All samples were extracted twice, built into double‐stranded sequencing libraries, and shotgun sequenced on the Illumina HiSeq 2500. The first extraction protocol, Method D, was previously designed for …

Differential Preservation Of Endogenous Human And Microbial Dna In Dental Calculus And Dentin, Allison E. Mann, Susanna Sabin, Kirsten Ziesemer, Ashild J. Vagene, Hannes Schroeder, Andrew T. Ozga, Krithivasan Sankaranarayanan, Courtney A. Hofman, James A. Fellows Yates, Domingo C. Salazar-Garcia, Bruno Frohlich, Mark Aldenderfer, Menno Hoogland, Christopher Read, George R. Milner, Anne C. Stone, Cecil M. Lewis Jr., Johannes Krause, Corinne Hofman, Kirsten I. Bos, Christina Warinner

Andrew Ozga

Dental calculus (calcified dental plaque) is prevalent in archaeological skeletal collections and is a rich source of oral microbiome and host-derived ancient biomolecules. Recently, it has been proposed that dental calculus may provide a more robust environment for DNA preservation than other skeletal remains, but this has not been systematically tested. In this study, shotgun-sequenced data from paired dental calculus and dentin samples from 48 globally distributed individuals are compared using a metagenomic approach. Overall, we find DNA from dental calculus is consistently more abundant and less contaminated than DNA from dentin. The majority of DNA in dental calculus is …

Marine Invertebrates: Communities At Risk, Jennifer A. Mather

Jennifer Mather, PhD

Our definition of the word ‘animal’ centers on vertebrates, yet 99% of the animals on the planet are invertebrates, about which we know little. In addition, although the Census of Marine Life (COML.org) has recently conducted an extensive audit of marine ecosystems, we still do not understand much about the animals of the seas. Surveys of the best-known ecosystems, in which invertebrate populations often play a key role, show that the invertebrate populations are affected by human impact. Coral animals are the foundation of coral reef systems, which are estimated to contain 30% of the species in the ocean. Physical …

What Is In An Octopus's Mind?, Jennifer Mather

Jennifer Mather, PhD

It is difficult to imagine what an animal as different from us as the octopus ‘thinks’, but we can make some progress. In the Umwelt or perceptual world of an octopus, what the lateralized monocular eyes perceive is not color but the plane of polarization of light. Information is processed by a bilateral brain but manipulation is done by a radially symmetrical set of eight arms. Octopuses do not self-monitor by vision. Their skin pattern system, used for excellent camouflage, is open loop. The output of the motor system of the eight arms is organized at several levels — brain, …

Non-Invasive Methods Of Identifying And Tracking Wild Squid, Ruth A. Byrne, James B. Wood, Roland C. Anderson, Ulrike Griebel, Jennifer A. Mather

Jennifer Mather, PhD

The ability to identify individual free-living animals in the field is an important method for studying their behavior. Apart from invasive external or internal tags, which may cause injury or abnormal behavior, most cephalopods cannot be tagged, as their skin is too soft and delicate for tag retention. Additionally, cephalopods remove many types of tags. However, body markings have been successfully used as a non invasive method to identify individuals of many different species of animals, including whale sharks, grey whales, seals, and zebras. We developed methods to sex and individually identify Caribbean reef squid, Sepiotheuthis sepioidea. Males showed distinct …

Geographic Variability Of Octopus Insularis Diet: From Oceanic Island To Continental Populations, Tatiana S. Leite, Allan T. Batista, Françoise D. Lima, Jaciana C. Barbosa, Jennifer A. Mather

Jennifer Mather, PhD

A predator’s choice of prey can be affected by many factors. We evaluated various influences on population dietary composition, individual specialization and size of prey in Octopus insularis populations from 2 continental and 4 insular locations. We expected that habitat diversity would lead to diet heterogeneity. Furthermore, in keeping with MacArthur & Wilson’s (1967) theory of island biogeography, we expected that diet diversity would be lower around islands than on the coast of the mainland. Both predictions were confirmed when prey remains from octopus middens were examined. The 2 continental areas exhibited a richer habitat diversity and a wider variety …

Behaviour Development: A Cephalopod Perspective, Jennifer A. Mather

Jennifer Mather, PhD

This paper evaluates the development of behaviour from the viewpoint of the intelligent and learningdependent cephalopod mollusks as a contrast to that of mammals. They have a short lifespan, commonly one to two years, and most are semelparous, reproducing only near the end of their lifespan. In the first two months of life, Sepia officinalis cuttlefish show drastic limitation on learning of prey choice and capture, gradually acquiring first short-term and then long-term learning over 60 days. This is paralleled by development of the vertical lobe of the brain which processes visually learned information. In the long nonreproductive adulthood, Octopus …

Animal Organs In Humans: Uncalculated Risks And Unanswered Questions, Gillian R. Langley, Joyce D'Silva

Gill Langley, PhD

This report, produced jointly by the British Union for the Abolition of Vivisection and Compassion in World Farming, fills a number of significant gaps in the current debate about xenotransplantation.

In this report we also summarise the ethical and welfare issues concerning experiments on animals for xenotransplant research and their possible use as source animals for organs. Both these aspects are responsible for much pain and distress caused to many animals. We prefer the term “source animals” to “donor animals”, because animals do not choose to donate their organs for xenotransplantation.

Nest-Site Selection By Belted Kingfishers (Ceryle Alcyon) In Colorado, Sara Shields, Jeffrey F. Kelly

Sara Shields, PhD

Along the Cache la Poudre River in northern Colorado, belted kingfishers nested in relatively tall banks that lacked a toe. Kingfishers constructed burrows in soils that contained significantly less sand than was present at systematically sampled points. This finding conflicts with earlier findings that indicate kingfishers select sandy soils for burrow construction. Otherwise, the physical characteristics of banks used by belted kingfishers in Colorado were similar to those found elsewhere.

Salmonid Species Diversity Predicts Salmon Consumption By Terrestrial Wildlife, Christina N. Service, Andrew N. Bateman, Megan S. Adams, Kyle A. Artelle, Thomas E. Reimchen, Paul C. Paquet, Chris T. Darimont

Chris Darimont, PhD

1. Resource waves—spatial variation in resource phenology that extends feeding opportunities for mobile consumers—can affect the behaviour and productivity of recipient populations. Interspecific diversity among Pacific salmon species (Oncorhynchus spp.) creates staggered spawning events across space and time, thereby prolonging availability to terrestrial wildlife.

2. We sought to understand how such variation might influence consumption by terrestrial predators compared with resource abundance and intra- and interspecific competition.

3. Using stable isotope analysis, we investigated how the proportion of salmon in the annual diet of male black bears (Ursus americanus; n = 405) varies with species diversity and density of spawning …

Publication Reform To Safeguard Wildlife From Researcher Harm, Kate A. Field, Paul C. Paquet, Kyle A. Artelle, Gilbert Proulx, Ryan K. Brook, Chris T. Darimont

Chris Darimont, PhD

Despite abundant focus on responsible care of laboratory animals, we argue that inattention to the maltreatment of wildlife constitutes an ethical blind spot in contemporary animal research. We begin by reviewing significant shortcomings in legal and institutional oversight, arguing for the relatively rapid and transformational potential of editorial oversight at journals in preventing harm to vertebrates studied in the field and outside the direct supervision of institutions. Straightforward changes to animal care policies in journals, which our analysis of 206 journals suggests are either absent (34%), weak, incoherent, or neglected by researchers, could provide a practical, effective, and rapidly imposed …

Protecting Biodiversity In British Columbia: Recommendations For Developing Species At Risk Legislation, Alana R. Westwood, Sarah P. Otto, Arne Mooers, Chris Darimont, Karen E. Hodges, Chris Johnson, Brian M. Starzomski, Cole Burton, Kai M. A. Chan, Marco Festa-Bianchet, Shaun Fluker, Sumeet Gulati, Aerin L. Jacob, Dan Kraus, Tara G. Martin, Wendy J. Palen, John D. Reynolds, Jeannette Whitton

Chris Darimont, PhD

British Columbia has the greatest biological diversity of any province or territory in Canada. Yet increasing numbers of species in British Columbia are threatened with extinction. The current patchwork of provincial laws and regulations has not effectively prevented species declines. Recently, the Provincial Government has committed to enacting an endangered species law. Drawing upon our scientific and legal expertise, we offer recommendations for key features of endangered species legislation that build upon strengths and avoid weaknesses observed elsewhere. We recommend striking an independent Oversight Committee to provide recommendations about listing species, organize Recovery Teams, and monitor the efficacy of actions …

Laterality Strength Is Linked To Stress Reactivity In Port Jackson Sharks (Heterodontus Portusjacksoni), Evan E. Byrnes, Catarina Vila Pouca, Culum Brown

Culum Brown, PhD

Cerebral lateralization is an evolutionarily deep-rooted trait, ubiquitous among the vertebrates and present even in some invertebrates. Despite the advantages of cerebral lateralization in enhancing cognition and facilitating greater social cohesion, large within population laterality variation exists in many animal species. It is proposed that this variation is maintained due links with inter-individual personality trait differences. Here we explored for lateralization in Port Jackson sharks (Heterodontus portusjacksoni) using T-maze turn and rotational swimming tasks. Additionally, we explored for a link between personality traits, boldness and stress reactivity, and cerebral lateralization. Sharks demonstrated large individual and sex biased laterality …

Malanda Gold: The Tale Of A Unique Rainbowfish From The Atherton Table-Lands, Now On The Verge Of Extinction., Peter J. Unmack, Keith Martin, Michael P. Hammer, Brendan Ebner, Karl Moy, Culum Brown

Culum Brown, PhD

No abstract provided.

"Being Mindful" And Becoming A "Harmony Worker" During Unsettling Times.Docx

Carroy U "Cuf" Ferguson, Ph.D.

Stress Profile Influences Learning Approach In A Marine Fish, Vincent Raoult, Larissa Trompf, Jane E. Williamson, Culum Brown

Culum Brown, PhD

The spatial learning skills of high and low stress juvenile mulloway (Argyrosomus japonicus) were tested in a dichotomous choice apparatus. Groups of fish were formed based on background blood cortisol levels and required to learn the location of a food reward hidden in one of two compartments. Low stress fish characterised by low background levels of the stress hormone cortisol had higher activity levels and entered both rewarded and unrewarded rooms frequently. Within the first week of exposure, however, their preference for the rewarded room increased, indicative of learning. Fish that had high background levels of cortisol, in …

Does Detection Range Matter For Inferring Social Networks In A Benthic Shark Using Acoustic Telemetry?, Johann Mourier, Nathan Charles Bass, Tristan L. Guttridge, Joanna Day, Culum Brown

Culum Brown, PhD

Accurately estimating contacts between animals can be critical in ecological studies such as examining social structure, predator–prey interactions or transmission of information and disease. While biotelemetry has been used successfully for such studies in terrestrial systems, it is still under development in the aquatic environment. Acoustic telemetry represents an attractive tool to investigate spatio-temporal behaviour of marine fish and has recently been suggested for monitoring underwater animal interactions. To evaluate the effectiveness of acoustic telemetry in recording interindividual contacts, we compared co-occurrence matrices deduced from three types of acoustic receivers varying in detection range in a benthic shark species. Our …

Incubation Under Climatewarming Affects Behavioral Lateralisation In Port Jackson Sharks, Catarina Vila Pouca, Connor Gervais, Joshua Reed, Culum Brown

Culum Brown, PhD

Climate change is warming the world’s oceans at an unprecedented rate. Under predicted end-of-century temperatures, many teleosts show impaired development and altered critical behaviors, including behavioral lateralisation. Since laterality is an expression of brain functional asymmetries, changes in the strength and direction of lateralisation suggest that rapid climate warming might impact brain development and function. However, despite the implications for cognitive functions, the potential effects of elevated temperature in lateralisation of elasmobranch fishes are unknown. We incubated and reared Port Jackson sharks at current and projected end-of-century temperatures and measured preferential detour responses to left or right. Sharks incubated at …

A Risk Assessment And Phylogenetic Approach, Culum Brown

Culum Brown, PhD

The precautionary principal is often invoked when talking about the evidence of sentience in animals, largely because we can never be certain what any animal is thinking or feeling. Birch (2017) offers a preliminary framework for the use of the precautionary principal for animal sentience combining an epistemic rule with a decision rule. I extend this framework by adding an evolutionary phylogentic approach which spreads the burden of proof across broad taxonomic groups and a risk assessment component which magnifies the likely impact by the number of animals involved.

Ample Evidence For Fish Sentience And Pain, Lynne U. Sneddon, David C.C. Wolfenden, Matthew C. Leach, Ana M. Valentim, Peter J. Steenbergen, Nabila Bardine, Donald M. Broom, Culum Brown

Culum Brown, PhD

The majority of commentaries are supportive of our position on the scepticism that muddies the waters surrounding fish pain and sentience. There is substantial empirical evidence for pain in fish. Animals’ experience of pain cannot be compared to artificial intelligence (AI) because AI can only mimic responses to nociceptive input on the basis of human observations and programming. Accepting that fish are sentient would not be detrimental to the industries reliant on fish. A more proactive discussion between scientists and stakeholders is needed to improve fish welfare for the benefit of all.

Fish Sentience Denial: Muddying The Waters, Lynne U. Sneddon, Javier Lopez-Luna, David C.C. Wolfenden, Matthew C. Leach, Ana M. Valentim, Peter J. Steenbergen, Nabila Bardine, Amanda D. Currie, Donald M. Broom, Culum Brown

Culum Brown, PhD

Recent empirical studies have reported evidence that many aquatic species, including fish, cephalopods and crustaceans, have the capacity for nociception and pain, and that their welfare should be taken into consideration. Some sceptics, rejecting the precautionary principle, have denied that any study demonstrates pain or other aspects of sentience in fish. This target article discusses some of the scientific shortcomings of these critiques through a detailed analysis of a study exploring nociception and analgesia in larval zebrafish.

Wild Neighbors : The Humane Approach To Living With Wildlife, John Hadidian

John Hadidian, PhD

Wild Neighbors provides practical, humane, and effective advice on how to share living space with 35 of the most common species, from alligators to woodpeckers, found in the lower 48 states. Advice focuses on how to: properly and accurately define a wildlife problem; determine what type of animal is causing it; identify the damage; effectively take action for a humane and permanent solution; and proactively avoid future conflicts. This long-awaited, new and expanded edition provides invaluable information to any homeowner who seeks to live in harmony with the wildlife in his backyard and in his community.

A Moral Panic Over Cats, William S. Lynn, Francisco J. Santiago-Ávila, Joann Lindenmayer, John Hadidian, Arian D. Wallach, Barbara J. King

John Hadidian, PhD

Some conservationists believe that free-ranging cats pose an enormous risk to biodiversity and public health and therefore should be eliminated from the landscape by any means necessary. They further claim that those who question the science or ethics behind their arguments are science deniers (merchants of doubt) seeking to mislead the public. As much as we share a commitment to conservation of biodiversity and wild nature, we believe these ideas are wrong and fuel an unwarranted moral panic over cats. Those who question the ecological or epidemiological status of cats are not science deniers, and it is a false analogy …

Are Humane Traps "Humane"? An Animal Welfare Perspective, John Hadidian, John Griffin, David Pauli

John Hadidian, PhD

No abstract provided.