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Plant Pathology

2015

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Full-Text Articles in Life Sciences

Genome Sequences Of Three Phytopathogenic Species Of The Magnaporthaceae Family Of Fungi, Laura H. Okagaki, Cristiano C. Nunes, Joshua Sailsbery, Brent Clay, Doug Brown, Titus John, Yeonyee Oh, Nelson Young, Michael Fitzgerald, Brian J. Haas, Qiandong Zeng, Sarah Young, Xian Adiconis, Lin Fan, Joshua Z. Levin, Thomas K. Mitchell, Patricia A. Okubara, Mark L. Farman, Linda M. Kohn, Bruce Birren, Li-Jun Ma, Ralph A. Dean Dec 2015

Genome Sequences Of Three Phytopathogenic Species Of The Magnaporthaceae Family Of Fungi, Laura H. Okagaki, Cristiano C. Nunes, Joshua Sailsbery, Brent Clay, Doug Brown, Titus John, Yeonyee Oh, Nelson Young, Michael Fitzgerald, Brian J. Haas, Qiandong Zeng, Sarah Young, Xian Adiconis, Lin Fan, Joshua Z. Levin, Thomas K. Mitchell, Patricia A. Okubara, Mark L. Farman, Linda M. Kohn, Bruce Birren, Li-Jun Ma, Ralph A. Dean

Plant Pathology Faculty Publications

Magnaporthaceae is a family of ascomycetes that includes three fungi of great economic importance: Magnaporthe oryzae, Gaeumannomyces graminis var. tritici, and Magnaporthe poae. These three fungi cause widespread disease and loss in cereal and grass crops, including rice blast disease (M. oryzae), take-all disease in wheat and other grasses (G. graminis), and summer patch disease in turf grasses (M. poae). Here, we present the finished genome sequence for M. oryzae and draft sequences for M. poae and G. graminis var. tritici. We used multiple technologies to sequence and annotate the …


Demography And Disease Of The Rare Shrub Buckleya Distichophylla (Santalaceae) In Northeastern Tennessee, William Seth Ratliff Dec 2015

Demography And Disease Of The Rare Shrub Buckleya Distichophylla (Santalaceae) In Northeastern Tennessee, William Seth Ratliff

Undergraduate Honors Theses

Piratebush (Buckleya distichophylla (Nutt.) Torr.) is a rare, hemiparasitic shrub with the only extant populations in western North Carolina, northeastern Tennessee, and southwestern Virginia. The preferred natural hosts of piratebush, Carolina and eastern hemlocks, have seen sharp declines over the last decade due to the invasive hemlock woolly adelgid. Virginia pine, another important host of piratebush, is also susceptible to disease, specifically Cronartium appalachianum, a rust fungus for which piratebush is the secondary host. This study described and analyzed current demographic parameters of three Tennessee piratebush populations. Additionally, spatial patterns of disease and demographic characters were analyzed. These …


Nematicidal Activity Of Extracts From Phytolacca Americana On Five Plant-Pathogenic Nematode Species Of Economic Importance, Saleh Ahmed Dec 2015

Nematicidal Activity Of Extracts From Phytolacca Americana On Five Plant-Pathogenic Nematode Species Of Economic Importance, Saleh Ahmed

All Dissertations

Plant-parasitic nematodes cause significant losses to plant agriculture annually. The limited availability and high cost of synthetic nematicides, along with the environmental risks associated with their use, have created a renewed interest in the search for alternative management tactics. One such alternative tactic is the use of plant extracts. The focus of this research is the evaluation of the nematicidal activity of water extracts from Pokeweed (Phytolacca americana). In vitro and greenhouse tests were performed to evaluate the effects of the extracts on five species of plant-pathogenic nematodes of economic importance: Aphelenchoides fragariae, Ditylenchus dispsaci, Meloidogyne incognita, Pratylenchus penetrans, and …


Potential Interaction Between Pre- And Post-Emergence Herbicides And The Efficacy Of Insecticide And Fungicide Seed Treatments In Cotton, Cory Joseph Vineyard Dec 2015

Potential Interaction Between Pre- And Post-Emergence Herbicides And The Efficacy Of Insecticide And Fungicide Seed Treatments In Cotton, Cory Joseph Vineyard

Masters Theses

An apparent reduction in the performance of neonicotinoid seed treatments in controlling thrips, especially in cotton, has been observed, which has coincided with the increased use of both pre- and post-emergence herbicides to control glyphosate-resistant weeds. The objective of this research was to evaluate the potential interactions of both pre- and post-emergence herbicides on the efficacy of insecticide and fungicide seed treatments in cotton

Aldicarb along with imidacloprid and thiamethoxam seed treatments reduced thrips numbers compared with non-treated seed. However, thiamethoxam did not provide effective control. Some pre-emergence herbicide treatments reduced plant health. While there was evidence that thrips injury …


A Comparative Study Of Medicago Truncatula Transcriptomes As They Relate To Saponin Defenses Against Insect Pests, Audra Mae Rogers Dec 2015

A Comparative Study Of Medicago Truncatula Transcriptomes As They Relate To Saponin Defenses Against Insect Pests, Audra Mae Rogers

Graduate Theses and Dissertations

Triterpene saponins are a class of defensive plant-derived compounds, which have a

variety of functions including antimicrobial, insecticidal, and nematicidal activities. This

research assessed the performance of the beet armyworm, Spodoptera exigua, following ad

libero feeding on Medicago truncatula accessions differing in specialized metabolite and

saponin profiles. Insect performance did not directly relate to the foliar saponin levels in the

accessions, which was measured using HPLC mass spectrometry. Accession ESP105 had the lowest foliar saponins overall, yet had similar levels of soyasaponins compared to the other accessions. Conversely, accessions A17, PRT178, and GRC43 had high foliar saponins with particularly high …


The Effects Of Meloidogyne Incognita And Heterodera Glycines On The Yield And Quality Of Edamame In Arkansas, Juliet Fultz Dec 2015

The Effects Of Meloidogyne Incognita And Heterodera Glycines On The Yield And Quality Of Edamame In Arkansas, Juliet Fultz

Graduate Theses and Dissertations

Edamame (Glycine max), also known as vegetable soybean, was introduced to the United States from Japan in 1890 and has been growing in popularity as a nutrient-rich, low-sugar snack in recent years. In 2012, the American Vegetable Soybean and Edamame, Inc. established the first domestic commercial processing plant in Mulberry, Arkansas and contracted local growers for production. Since the crop is harvested when seed are immature, management practices are different from those for traditional soybean. Plant-parasitic nematodes, particularly Meloidogyne incognita (southern root-knot) and Heterodera glycines (soybean cyst), are common in Arkansas and are pests of concern for edamame growers. Edamame …


Rice Blast Disease In The U.S. And Africa: Determination Of Pathogen Diversity And The Identification Of Resistance Genes For Disease Management, Felix Rotich Dec 2015

Rice Blast Disease In The U.S. And Africa: Determination Of Pathogen Diversity And The Identification Of Resistance Genes For Disease Management, Felix Rotich

Graduate Theses and Dissertations

Rice blast caused by Magnaporthe oryzae (= Pyricularia oryzae) B. Couch, is a leading disease of rice. Magnaporthe oryzae exhibits a high degree of diversity. The diversity of isolates of M. oryzae from Africa and the U.S. were examined using vegetative compatibility and virulence phenotyping as well as determination of variation in the avirulence gene AVRPiz-t in isolates from Africa. Also, evaluation of blast resistance genes in the interspecific rice germplasm “New Rice for Africa” NERICA was done using F2 progeny of the cross of U.S. susceptible cultivar M204 and NERICA 12. The U.S. isolates were in three vegetative compatibility …


Blackberry Virosome: A Micro And Macro Approach, Archana Khadgi Dec 2015

Blackberry Virosome: A Micro And Macro Approach, Archana Khadgi

Graduate Theses and Dissertations

Viruses pose a major concern for blackberry production around the world with more than 40 species known to infect the crop. Virus complexes have been identified recently as the major cause of plant decline with blackberry yellow vein disease (BYVD) being the most important disease of the crop in the Southern United States. The objective of this research was to study the blackberry virosome in both the macro and micro scale. The large scale approach involves identification of the major viruses known to be associated with BYVD in the Southern United States as well as the identification of other viruses …


The Role Of G-Protein Signaling In Pathogenesis In Cercospora Zeae-Maydis, Brant Smith Dec 2015

The Role Of G-Protein Signaling In Pathogenesis In Cercospora Zeae-Maydis, Brant Smith

Graduate Theses and Dissertations

Gray leaf spot, caused by Cercospora zeae-maydis, is one of the most destructive foliar diseases of maize worldwide. C. zeae-maydis orients hyphal growth towards stomata (stomatal tropism) and forms infectious structures (appressoria) that are necessary for successful infection. Although some genes involved in pathogenesis in C. zeae-maydis have been identified, the molecular mechanisms are not well understood. In fungi, heterotrimeric G-proteins consist of three subunits (α, β, and γ) and mediate responses to environmental stimuli. They regulate diverse functions, including nutrient detection, virulence, fungal development, conidiation, secondary metabolism, and pathogenesis in many plant pathogenic fungi. This research explored the role …


Understanding The Causal Agent Of Rose Rosette Disease, Patrick Louis Di Bello Dec 2015

Understanding The Causal Agent Of Rose Rosette Disease, Patrick Louis Di Bello

Graduate Theses and Dissertations

A number viruses are known to infect roses, ranging from those in the genera Nepovirus, and Ilarvirus, which have been reported since the inception of rose virology, to recently discovered viruses in the genera Carmovirus, Closterovirus, Emaravirus, Luteovirus, Rosadnavirus, and Potyvirus. Of the viral diseases in rose, arguably the most damaging is Rose rosette (RRD), which is associated with the Emaravirus, Rose rosette virus (RRV). The objective of this thesis is to fill in the gaps in knowledge on the epidemiological aspects of RRD and RRV. There has been significant progress in the epidemiology of the RRD agent prior to …


Canola: A Modern Crop For A Modern Era, Kenneth J. Roché Nov 2015

Canola: A Modern Crop For A Modern Era, Kenneth J. Roché

Doctor of Plant Health Program: Dissertations and Student Research

The University of Nebraska-Lincoln Doctor of Plant Health program is a professional doctorate program with a comprehensive approach to plants and agriculture. The program emphasizes a broad interdisciplinary education across all plant-related disciplines, practical learning, research, and experience through internships. For my final required internship, I worked as a senior agricultural research intern with Research Designed for Agriculture (RD4AG) in Montana. RD4AG is a contract research organization based in Yuma, AZ with over thirty-years of experience. During my three month internship at RD4AG in Montana, a large portion of my responsibilities centered on managing regulated canola trials that were undertaken …


Chromatin Immunoprecipitation (Chip) Assay For Detecting Direct And Indirect Protein -Dna Interactions In Magnaporthe Oryzae, Gang Li, Margarita Marroquin-Guzman, Richard A. Wilson Nov 2015

Chromatin Immunoprecipitation (Chip) Assay For Detecting Direct And Indirect Protein -Dna Interactions In Magnaporthe Oryzae, Gang Li, Margarita Marroquin-Guzman, Richard A. Wilson

Department of Plant Pathology: Faculty Publications

Chromatin immunoprecipitation (ChIP) is a powerful technology for analyzing protein-DNA interactions in cells. Robust ChIP procedures have been established for investigating direct interactions between protein and DNA. However, detecting indirect protein-DNA interactions in vivo is challenging. Recently, we used ChIP to analyze an indirect protein-DNA interaction between a putative histone demethylase, MoJmjC, and the promoter of the superoxide dismutase 1-encoding gene MoSOD1 in the rice blast fungus Magnaporthe oryzae (M. oryzae) (Fernandez et al., 2014). We tagged MoJmjC with the 3x FLAG epitope (Fernandez et al., 2014), instead of the larger and more commonly used GFP epitope, to mitigate …


Transgenic Soybean Plants Expressing Asoybean Homolog Of Glycine-Rich Protein 7 (Grp7) And Exhibiting Improved Innate Immunity, James R. Alfano, Anna Joe, Thomas E. Clemente, Zhengqing Fu, Ming Guo, Byeong-Ryool Jeong, Thomas Elthon Oct 2015

Transgenic Soybean Plants Expressing Asoybean Homolog Of Glycine-Rich Protein 7 (Grp7) And Exhibiting Improved Innate Immunity, James R. Alfano, Anna Joe, Thomas E. Clemente, Zhengqing Fu, Ming Guo, Byeong-Ryool Jeong, Thomas Elthon

Department of Plant Pathology: Faculty Publications

This disclosure provides for transgenic Soybean plants expressing a soybean homolog of glycine-rich protein 7 (GRP7) and exhibiting improved innate immunity and meth ods of making Such plants.


The Khmer Software Package: Enabling Efficient Nucleotide Sequence Analysis [Version 1; Referees: 2 Approved, 1 Approved With Reservations], Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela Mca'nulty, Eric Mcdonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Camille Scott, Josiah Seaman, Scott Sievert 38, Jared Simpson, Connor T. Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, En Zyme, C. Titus Brown, Erich Schwarz Oct 2015

The Khmer Software Package: Enabling Efficient Nucleotide Sequence Analysis [Version 1; Referees: 2 Approved, 1 Approved With Reservations], Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela Mca'nulty, Eric Mcdonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Camille Scott, Josiah Seaman, Scott Sievert 38, Jared Simpson, Connor T. Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, En Zyme, C. Titus Brown, Erich Schwarz

Department of Plant Pathology: Faculty Publications

The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normalization. khmer is implemented in C++ and Python, and is freely available under the BSD license at https://github.com/dib-lab/khmer/.


Introduction To The Toxins Special Issue On Ergot Alkaloids, Christopher L. Schardl Oct 2015

Introduction To The Toxins Special Issue On Ergot Alkaloids, Christopher L. Schardl

Plant Pathology Faculty Publications

No abstract provided.


A Position Paper On The Electronic Publication Of Nematode Taxonomic Manuscripts, Eyualem Abebe, James G. Baldwin, Byron Adams, Duane Hope, Scott Gardner, Robin Huettel, Peter Mullin, Thomas O. Powers, Jyotsna Sharma, Weimin Ye, William K. Thomas Sep 2015

A Position Paper On The Electronic Publication Of Nematode Taxonomic Manuscripts, Eyualem Abebe, James G. Baldwin, Byron Adams, Duane Hope, Scott Gardner, Robin Huettel, Peter Mullin, Thomas O. Powers, Jyotsna Sharma, Weimin Ye, William K. Thomas

Byron Adams

Several nematode species have now attained ‘model organism’ status, yet there remain many niches in basic biological inquiry for which nematodes would be ideal model systems of study. However, furthering the model system approach is hindered by lack of information on nematode biodiversity. The shortage of taxonomic resources to inventory and characterize biodiversity hinders research programs in invasion biology, ecosystem functioning, conservation biology, and many others. The disproportion between numbers of species to be described and numbers of available taxonomic specialists is greater for Nematoda than for any other metazoan phylum. A partial solution to the taxonomic impediment is the …


Novel Application Of Phastsystem Polyacrylamide Gel Electrophoresis Using Restriction Fragment Length Polymorphism ± Internal Transcribed Spacer Patterns Of Individuals For Molecular Identification Of Entomopathogenic Nematodes, Horolma Pamjav, Dimitra Triga, Zsuzsanna Buzµs, Tibor Vellai, Attila Lucskai, Byron Adams, Alexander P. Reid, Ann Burnell, Christine Griffin, Itamar Glazer, Michael G. Klein, Andras Fodor Sep 2015

Novel Application Of Phastsystem Polyacrylamide Gel Electrophoresis Using Restriction Fragment Length Polymorphism ± Internal Transcribed Spacer Patterns Of Individuals For Molecular Identification Of Entomopathogenic Nematodes, Horolma Pamjav, Dimitra Triga, Zsuzsanna Buzµs, Tibor Vellai, Attila Lucskai, Byron Adams, Alexander P. Reid, Ann Burnell, Christine Griffin, Itamar Glazer, Michael G. Klein, Andras Fodor

Byron Adams

A relatively rapid and economic way of identifying and assigning nematodes to taxons, which had already been determined either by comparative sequence analysis of nuclear rDNA internal transcribed spacer (ITS) region or by other methods of molecular or conventional taxonomy, is provided. Molecular identification of entomopathogenic nematodes (EPN) can be upgraded by basing it on PhastSystem polyacrylamide gel electrophoresis (PAGE) analysis of restriction fragment length polymorphism (RFLP) patterns of polymerase chain reaction (PCR)-amplified DNA derived from single nematodes of Steinernema or Heterorhabditis spp. Although analysis from single worms has previously been made on agarose gel, the resolution on PhastSystem PAGE …


A Unique 5' Translation Element Discovered In Triticum Mosaic Virus, Robyn Roberts, Jincan Zhang, Laura K. Mayberry, Satyanarayana Tatineni, Karen S. Browning, Aurelie M. Rakotondrafara Sep 2015

A Unique 5' Translation Element Discovered In Triticum Mosaic Virus, Robyn Roberts, Jincan Zhang, Laura K. Mayberry, Satyanarayana Tatineni, Karen S. Browning, Aurelie M. Rakotondrafara

Department of Plant Pathology: Faculty Publications

Several plant viruses encode elements at the 5' end of their RNAs, which, unlike most cellular mRNAs, can initiate translation in the absence of a 5' m7GpppG cap. Here, we describe an exceptionally long (739-nucleotide [nt]) leader sequence in triticum mosaic virus (TriMV), a recently emerged wheat pathogen that belongs to the Potyviridae family of positive-strand RNA viruses. We demonstrate that the TriMV 5' leader drives strong cap-independent translation in both wheat germ extract and oat protoplasts through a novel, noncanonical translation mechanism. Translation preferentially initiates at the 13th start codon within the leader sequence independently of eIF4E but involves …


Detecting Genomic Regions Responsible For Resistance In Arabidopsis, Valeria Cancino, Anjali Iyer-Pascuzzi, Rucha Karve Aug 2015

Detecting Genomic Regions Responsible For Resistance In Arabidopsis, Valeria Cancino, Anjali Iyer-Pascuzzi, Rucha Karve

The Summer Undergraduate Research Fellowship (SURF) Symposium

Ralstonia solanacearum is a soil-borne plant root colonizing pathogen and the casual agent of bacterial wilt (BW) disease. BW leads to severe yield loss in a wide variety of agricultural commodity crops, such as tomato, banana, and pepper. In this study, we look at the plant-pathogen interaction between Ralstonia solanacearum and various ecotypes of Arabidopsis thaliana with the goal of finding resistant ecotypes. To identify resistant ecotypes, seeds are first sterilized and left to soak in the dark. Then the seeds are plated on agar media, transferred to a growth chamber, and allowed to grow for 5 days. On day …


Chlorophyll Synthase Under Epigenetic Surveillance Is Critical For Vitamin E Synthesis, And Altered Expression Affects Tocopherol Levels In Arabidopsis, Chunyu Zhang, Wei Zhang, Guodong Ren, Denli Li, Rebecca E. Cahoon, Ming Chen, Yongming Zhou, Bin Yu, Edgar B. Cahoon Aug 2015

Chlorophyll Synthase Under Epigenetic Surveillance Is Critical For Vitamin E Synthesis, And Altered Expression Affects Tocopherol Levels In Arabidopsis, Chunyu Zhang, Wei Zhang, Guodong Ren, Denli Li, Rebecca E. Cahoon, Ming Chen, Yongming Zhou, Bin Yu, Edgar B. Cahoon

Center for Plant Science Innovation: Faculty and Staff Publications

Chlorophyll synthase catalyzes the final step in chlorophyll biosynthesis: the esterification of chlorophyllide with either geranylgeranyl diphosphate or phytyl diphosphate (PDP). Recent studies have pointed to the involvement of chlorophyll-linked reduction of geranylgeranyl by geranylgeranyl reductase as a major pathway for the synthesis of the PDP precursor of tocopherols. This indirect pathway of PDP synthesis suggests a key role of chlorophyll synthase in tocopherol production to generate the geranylgeranyl-chlorophyll substrate for geranylgeranyl reductase. In this study, contributions of chlorophyll synthase to tocopherol formation in Arabidopsis (Arabidopsis thaliana) were explored by disrupting and altering expression of the corresponding gene …


Calmodulin-Like Protein 38: A Component Of Ribonucleoprotein Particles During Hypoxic Stress Responses In Arabidopsis, Ansul Lokdarshi Aug 2015

Calmodulin-Like Protein 38: A Component Of Ribonucleoprotein Particles During Hypoxic Stress Responses In Arabidopsis, Ansul Lokdarshi

Doctoral Dissertations

Waterlogging stress leads to a crisis in energy metabolism and the accumulation of toxic metabolites due to the hypoxic and/or anoxic environment associated with this condition. To respond and adapt to this situation, higher plants employ an integrated genetic program that leads to the induction of anaerobic response polypeptide genes that encode metabolic and signaling proteins involved in altering metabolic flow and other adaptive responses. The study presented here shows that the Arabidopsis thaliana calmodulin-like protein CML38 is calcium sensor protein that serves as a member of the core anaerobic response gene family and is involved in modulating the survival …


Characterization Of A Novel Megabirnavirus From Sclerotinia Sclerotiorum Reveals Horizontal Gene Transfer From Single-Stranded Rna Virus To Double-Stranded Rna Virus, Minghong Wang, Yong Wang, Xiangzhong Sun, Jiasen Cheng, Yanping Fu, Huiquan Liu, Daohong Jiang, Said A. Ghabrial, Jiatao Xie Aug 2015

Characterization Of A Novel Megabirnavirus From Sclerotinia Sclerotiorum Reveals Horizontal Gene Transfer From Single-Stranded Rna Virus To Double-Stranded Rna Virus, Minghong Wang, Yong Wang, Xiangzhong Sun, Jiasen Cheng, Yanping Fu, Huiquan Liu, Daohong Jiang, Said A. Ghabrial, Jiatao Xie

Plant Pathology Faculty Publications

Mycoviruses have been detected in all major groups of filamentous fungi, and their study represents an important branch of virology. Here, we characterized a novel double-stranded RNA (dsRNA) mycovirus, Sclerotinia sclerotiorum megabirnavirus 1 (SsMBV1), in an apparently hypovirulent strain (SX466) of Sclerotinia sclerotiorum. Two similarly sized dsRNA segments (L1- and L2-dsRNA), the genome of SsMBV1, are packaged in rigid spherical particles purified from strain SX466. The full-length cDNA sequence of L1-dsRNA/SsMBV1 comprises two large open reading frames (ORF1 and ORF2), which encode a putative coat protein and an RNA-dependent RNA polymerase (RdRp), respectively. Phylogenetic analysis of the RdRp domain …


Rust Diseases On Switchgrass (Panicum Virgatum), Ying Ma Aug 2015

Rust Diseases On Switchgrass (Panicum Virgatum), Ying Ma

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Switchgrass (Panicum virgatum) is a perennial C4 grass native to the central prairies of North America. Recent development of switchgrass as a sustainable biofuel feedstock has raised interest in diseases that could impact switchgrass, especially when grown under monoculture conditions. Among the known diseases of switchgrass, rust diseases are the most widespread and could potentially impact yield and biomass quality of new switchgrass cultivars. Two species of rust fungi, Uromyces graminicola and Puccinia emaculata, are known to infect switchgrass, with P. emaculata being the primary or sole rust pathogen on switchgrass in southern US states. The …


Population Structure Of Late Blight (Phytophthora Infestans) In Colombia And Ecuador And Downy Mildew (Peronospora Farinosa F. Sp. Spinaciae) On Spinach In Arizona And California, Rebecca Marie Lyon Aug 2015

Population Structure Of Late Blight (Phytophthora Infestans) In Colombia And Ecuador And Downy Mildew (Peronospora Farinosa F. Sp. Spinaciae) On Spinach In Arizona And California, Rebecca Marie Lyon

Masters Theses

In this study, Phytophthora infestans and Peronospora farinosa f. sp. spinaciae populations were analyzed using single nucleotide polymorphisms (SNPs). In Ecuador and Colombia, Phytophthora infestans causes significant damage to potato and tomato and the epidemiology is known to be highly clonal. Our objective was to measure population structure within the context of this clonal epidemiology using both synonymous and nonsynonymous markers. Candidate SNP sites were selected by comparing the draft genomes of the Ecuadorian isolates EC1-3527 and EC1-3626. Genotypes were assessed directly from infected tissue using a targeted sequencing approach. A total of 54 polymorphic sites were assessed in 93 …


Osmotic Stress Induces Phosphorylation Of Histone H3 At Threonine 3 In Pericentromeric Regions Of Arabidopsis Thaliana, Zhen Wang, Juan Armando Casas-Mollano, Jianping Xu, Jean-Jack M. Riethoven, Chi Zhang, Heriberto Cerutti Jul 2015

Osmotic Stress Induces Phosphorylation Of Histone H3 At Threonine 3 In Pericentromeric Regions Of Arabidopsis Thaliana, Zhen Wang, Juan Armando Casas-Mollano, Jianping Xu, Jean-Jack M. Riethoven, Chi Zhang, Heriberto Cerutti

Center for Plant Science Innovation: Faculty and Staff Publications

Histone phosphorylation plays key roles in stress-induced transcriptional reprogramming in metazoans but its function(s) in land plants has remained relatively unexplored. Here we report that an Arabidopsis mutant defective in At3g03940 and At5g18190, encoding closely related Ser/Thr protein kinases, shows pleiotropic phenotypes including dwarfism and hypersensitivity to osmotic/salt stress. The double mutant has reduced global levels of phosphorylated histone H3 threonine 3 (H3T3ph), which are not enhanced, unlike the response in the wild type, by drought-like treatments. Genome-wide analyses revealed increased H3T3ph, slight enhancement in trimethylated histone H3 lysine 4 (H3K4me3), and a modest decrease in histone H3 occupancy …


Osmotic Stress Induces Phosphorylation Of Histone H3 At Threonine 3 In Pericentromeric Regions Of Arabidopsis Thaliana, Zhen Wang, Juan Casas-Mollano, Jianping Xu, Jean-Jack Riethoven, Chi Zhang, Heriberto D. Cerutti Jul 2015

Osmotic Stress Induces Phosphorylation Of Histone H3 At Threonine 3 In Pericentromeric Regions Of Arabidopsis Thaliana, Zhen Wang, Juan Casas-Mollano, Jianping Xu, Jean-Jack Riethoven, Chi Zhang, Heriberto D. Cerutti

Center for Plant Science Innovation: Faculty and Staff Publications

Histone phosphorylation plays key roles in stress-induced transcriptional reprogramming in metazoans but its function(s) in land plants has remained relatively unexplored. Here we report that an Arabidopsis mutant defective in At3g03940 and At5g18190, encoding closely related Ser/Thr protein kinases, shows pleiotropic phenotypes including dwarfism and hypersensitivity to osmotic/salt stress. The double mutant has reduced global levels of phosphorylated histone H3 threonine 3 (H3T3ph), which are not enhanced, unlike the response in the wild type, by drought-like treatments. Genome-wide analyses revealed increased H3T3ph, slight enhancement in trimethylated histone H3 lysine 4 (H3K4me3), and a modest decrease in histone H3 occupancy …


Functional Characterization Of P3n-Pipo Protein In The Potyviral Life Cycle, Hoda Yaghmaiean Jul 2015

Functional Characterization Of P3n-Pipo Protein In The Potyviral Life Cycle, Hoda Yaghmaiean

Electronic Thesis and Dissertation Repository

Potyviruses represent the largest genus of plant-infecting viruses and include many agriculturally important viruses such as Turnip mosaic virus (TuMV), Soybean mosaic virus (SMV) and Plum pox virus (PPV). The potyviral genome consists of a large open reading frame (ORF) and a small ORF owing to a translational or transcriptional slippage in the P3 cistron. The polyproteins encoded by these two ORFs are proteolytically processed into 11 mature proteins. Recent studies have shown that P3N-PIPO, the frameshift resulting protein, is a plasmodesmata (PD)-located protein and involved in potyviral cell-to-cell movement by mediating the targeting of the potyviral CI protein to …


Isolation Of Possible Biocontrol Endophytic Bacteria From Solanum Tuberosum Effective Against Streptomyces Scabies., Annie Flatley, Luke Ogle, Adam Noel, Erica Fraley, Alaxandra Goodman, Donna Becker Jul 2015

Isolation Of Possible Biocontrol Endophytic Bacteria From Solanum Tuberosum Effective Against Streptomyces Scabies., Annie Flatley, Luke Ogle, Adam Noel, Erica Fraley, Alaxandra Goodman, Donna Becker

Poster Sessions

Use of biological control offers a cost effective and environmentally safe method for controlling plant diseases. Biocontrol agents that can colonize roots and live endophytically within plant tissue should allow for effective disease control. The goal of this research was to develop protocols to isolate putative Streptomyces species from potato stem and tuber tissue due to their ability to produce inhibitory compounds which could potentially reduce diseases caused by Streptomyces scabies. Endophyte isolation from Solanum tuberosum (potato) plants (stem and tuber tissues) that were grown in a biocontrol field trial were the focus of this study. Several surface …


Use Of Two Pathogen-Inhibiting Streptomyces Isolates For Biocontrol Of Scab Disease Of Raphanus Sativus, Tyler Park, Nichole Klingler, Adam Noel, Luke Ogle, Annie Flatley, Donna Becker Jul 2015

Use Of Two Pathogen-Inhibiting Streptomyces Isolates For Biocontrol Of Scab Disease Of Raphanus Sativus, Tyler Park, Nichole Klingler, Adam Noel, Luke Ogle, Annie Flatley, Donna Becker

Poster Sessions

Streptomyces species are ubiquitous soil bacteria that are promising as biological control agents due to their prolific antibiotic production that can inhibit soil-borne plant pathogens. This includes Streptomyces scabies, which causes scab disease on underground storage organs. The goal of this research was to test two Streptomyces isolates that have known inhibitory and biocontrol abilities against S. scabies in a potato (Solanum tuberosum) agricultural system for their effectiveness in biocontrol of this pathogen in a radish (Raphanus sativus) greenhouse assay. Pathogenic S. scabies were mixed into either pasteurized or unpasteurized soil prior to planting. Radish …


Evaluation Of Control Strategies For The Spread Of Citrus Greening, Vicente Valle Martinez Jul 2015

Evaluation Of Control Strategies For The Spread Of Citrus Greening, Vicente Valle Martinez

Theses and Dissertations - UTB/UTPA

Huanglongbing, also known as citrus greening, is a vector-based disease in citrus (with no cure known to date) that has drastically affected the citrus production in Florida in less than a decade and has been recently detected in Texas and California. In this paper, an epidemic model of the spatial spread of the disease is implemented among commercial and residential groves by taking into consideration the diffusion patterns of the psyllid vectors. A system of differential equations resembling one for malaria infection in humans is derived to evaluate different control methods such as quarantine, treatment, removal, foliar treatment, and pest …