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Evolution

2017

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Articles 1 - 30 of 221

Full-Text Articles in Life Sciences

Conservation And Variation Of Dna Methylation In Lactuca Sativa And Lactuca Serriola, Trudi A. Baker Dec 2017

Conservation And Variation Of Dna Methylation In Lactuca Sativa And Lactuca Serriola, Trudi A. Baker

Graduate Doctoral Dissertations

Molecular techniques for guiding plant breeding have successfully used wild progenitors of domestic crops as sources of genetic variants conveying desirable traits. However, epigenetic variation, in particular DNA methylation, is a significant source of phenotypic variation and epigenetic effects of plant domestication are poorly understood. Described herein are the first single-base pair resolution methylomes of the highly valued crop iceberg lettuce (Lactuca sativa cv. Salinas) and its close relative, and ubiquitous weed, L. serriola. This work suggests several roles for acquisition and inheritance of methylation in the evolution of Lactuca spp. in response to stress. The Lactuca spp. have conserved …


Multiple Signaling Functions Of Song In A Polymorphic Species With Alternative Reproductive Strategies, M. L. Grunst, A. S. Grunst, Vincent A. Formica, R. A. Gonser, E. M. Tuttle Dec 2017

Multiple Signaling Functions Of Song In A Polymorphic Species With Alternative Reproductive Strategies, M. L. Grunst, A. S. Grunst, Vincent A. Formica, R. A. Gonser, E. M. Tuttle

Biology Faculty Works

Vocal traits can be sexually selected to reflect male quality, but may also evolve to serve additional signaling functions. We used a long-term dataset to examine the signaling potential of song in dimorphic white-throated sparrows (Zonotrichia albicollis). We investigated whether song conveys multifaceted information about the vocalizing individual, including fitness, species identity, individual identity, and morph. We also evaluated whether song traits correlate differently with fitness in the two morphs, as the more promiscuous strategy of white, relative to tan, morph males might impose stronger sexual selection. Males with high song rates achieved higher lifetime reproductive success, and this pattern …


Comparative Study Of Spinning Field Development In Two Species Of Araneophagic Spiders (Araneae, Mimetidae, Australomimetus), Mark A. Townley, Danilo Harms Dec 2017

Comparative Study Of Spinning Field Development In Two Species Of Araneophagic Spiders (Araneae, Mimetidae, Australomimetus), Mark A. Townley, Danilo Harms

Molecular, Cellular & Biomedical Sciences

External studies of spider spinning fields allow us to make inferences about internal silk gland biology, including what happens to silk glands when the spider molts. Such studies often focus on adults, but juveniles can provide additional insight on spinning apparatus development and character polarity. Here we document and describe spinning fields at all stadia in two species of pirate spider (Mimetidae: Australomimetus spinosus, A. djuka). Pirate spiders nest within the ecribellate orb-building spiders (Araneoidea), but are vagrant, araneophagic members that do not build prey-capture webs. Correspondingly, they lack aggregate and flagelliform silk glands (AG, FL), specialized for forming prey-capture …


Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xiii. Review Of Pandinops Hawkeri, P. Peeli, P. Platycheles, And P. Pugilator (Scorpionidae), František Kovařík, Graeme Lowe, Hassan Sh Abdirahman Elmi Dec 2017

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xiii. Review Of Pandinops Hawkeri, P. Peeli, P. Platycheles, And P. Pugilator (Scorpionidae), František Kovařík, Graeme Lowe, Hassan Sh Abdirahman Elmi

Euscorpius

Pandinops platycheles (Werner, 1916) is diagnosed and fully complemented with color photos of types, and Pandinops pugilator (Pocock, 1900) is diagnosed and fully complemented with color photos of live and preserved specimens, as well as its habitat. The hemispermatophore of P. pugilator is illustrated and described for the first time. Pandinus hawkeri Pocock, 1900 and Pandinus peeli Pocock, 1900 are synonymized with Pandinops pugilator (Pocock, 1900).


Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xii. Pandinurus Hangarale Sp. N. (Scorpionidae) From Somaliland And A Review Of Type Locality And True Distribution Of Pandinurus Smithi (Pocock, 1897), František Kovařík, Graeme Lowe, Tomáš Mazuch, Ahmed Ibrahim Awale, Jana Štundlová, František Šťáhlavský Dec 2017

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xii. Pandinurus Hangarale Sp. N. (Scorpionidae) From Somaliland And A Review Of Type Locality And True Distribution Of Pandinurus Smithi (Pocock, 1897), František Kovařík, Graeme Lowe, Tomáš Mazuch, Ahmed Ibrahim Awale, Jana Štundlová, František Šťáhlavský

Euscorpius

Pandinurus hangarale sp. n. from Somaliland is described and fully complemented with color photos of live and preserved specimens, as well as its habitat. Hemispermatophore of P. hangarale sp. n. is illustrated and described. In addition to the analyses of external morphology and hemispermatophores, we also describe the karyotype of P. hangarale sp. n. (2n=120). Known localities of Pandinurus smithi (Pocock, 1897) are compiled; the type locality is not in Somaliland but in Ethiopia (Turfa) and in reality it is probably an endemic of Ethiopia.


A New Island Species Of Centruroides Marx, 1890 (Scorpiones: Buthidae) From The Southwestern Caribbean, Rolando Teruel, Brandon Myers Dec 2017

A New Island Species Of Centruroides Marx, 1890 (Scorpiones: Buthidae) From The Southwestern Caribbean, Rolando Teruel, Brandon Myers

Euscorpius

Herein we describe a new species of the Buthidae scorpion genus Centruroides Marx, 1890. It occurs at least in two small offshore islands of the southwestern Caribbean: Cozumel in Mexico and Guanaja in Honduras, based upon type specimens from the former and photographic evidence from the latter. It belongs in the "gracilis" species-group and is most closely related to both Centruroides gracilis (Latreille, 1805) and Centruroides nigrescens (Pocock, 1898).


Morphological And Gene Expression Plasticity In Neotropical Cichlid Fishes, Sharon Fern Clemmensen Dec 2017

Morphological And Gene Expression Plasticity In Neotropical Cichlid Fishes, Sharon Fern Clemmensen

Doctoral Dissertations

Trophic divergence in cichlid fish is linked to morphological shifts in the pharyngeal jaw apparatus. For instance, in the Heroine cichlids of Central America, the ability to crush hard-shelled mollusks is a convergent phenotype with multiple evolutionary origins. These durophagous species often have very similar pharyngeal jaw morphologies associated with the pharyngeal jaw apparatus and some of these similarities could be due to phenotypically plastic responses to mechanical stress. I examined the durophagous cichlid Vieja maculicauda for differences in pharyngeal osteology, dentition, and soft tissues when exposed to different diet regimes. Here I discuss the effect on the morphology and …


Systematics And Biogeography Of The Cortinarius Violaceus Group And Sequestrate Evolution In Cortinarius (Agaricales), Emma Harrower Dec 2017

Systematics And Biogeography Of The Cortinarius Violaceus Group And Sequestrate Evolution In Cortinarius (Agaricales), Emma Harrower

Doctoral Dissertations

Phylogenetics is a powerful tool used for illuminating the diversity of life on Earth, their evolution and their ecology. I created a multi-gene phylogenetic tree of Cortinarius section Cortinarius and uncovered five previously overlooked species, increasing the number of species in the section from seven to twelve. All members of the clade possess both cheilocystidia and pleurocystidia and possess a pigment known as (R)-39,49-dihydroxybphenylalanine. Ancestral state reconstruction estimated that the ancestral host was most likely an angiosperm, switching hosts when encountering novel host species in new lands, and only C. violaceus associating with the Pinaceae in North America. Biogeographic analysis …


Morphological, Genetic, And Environmental Characterization Of An Unusual Population Of Isoetes (Isoetaceae, Lycopodiophyta), Shannon L. Walker Dec 2017

Morphological, Genetic, And Environmental Characterization Of An Unusual Population Of Isoetes (Isoetaceae, Lycopodiophyta), Shannon L. Walker

Honors Theses

A large and unusual population of Isoetes (Isoetaceae, Lycopodiophyta) in the DeSoto National Forest, Wayne County, Mississippi, was studied to determine if the individuals there represent a new species or if they represent part of the variation of the one primary species of the longleaf pine belt of Mississippi, Isoetes louisianensis, which it most closely resembles. The unusual population and specimens of known Isoetes louisianensis were examined comparatively based on morphology, megaspore ornamentation, examination of habitat characteristics, and phylogenetic analysis of DNA sequence data from the nuclear internal transcribed spacer 1 and 2 (ITS) and the 5.8S ribosomal gene. No …


Acute Salivary Steroid Hormone Responses During Coalitional And Dyadic Competitions In Hong Kong Juvenile Children, Timothy Mchale Dec 2017

Acute Salivary Steroid Hormone Responses During Coalitional And Dyadic Competitions In Hong Kong Juvenile Children, Timothy Mchale

UNLV Theses, Dissertations, Professional Papers, and Capstones

A large body of research links testosterone and cortisol responses to competition during adulthood. Little psychoneuroendocrine research has explored salivary steroid hormone responses to competition during middle childhood. This project investigated the relationship between acute salivary steroid hormone change, performance, competitor type, and outcome effects in three different field studies, while controlling for Body Mass Index (BMI) and pubertal development, in a population of ethnically Chinese, Hong Kong juvenile children, 8-11 years of age. The relative dynamics of salivary steroid change were assessed during a 1) coalitional physical competition (soccer) in boys, 2) a non-physical mixed-sex coalitional competition (math contest), …


Emerging Infectious Disease And The Imperiled Relict Leopard Frog, Anthony Wayne Waddle Dec 2017

Emerging Infectious Disease And The Imperiled Relict Leopard Frog, Anthony Wayne Waddle

UNLV Theses, Dissertations, Professional Papers, and Capstones

The disease chytridiomycosis, caused by the aquatic fungal pathogen Batrachochytrium dendrobatidis (Bd), has emerged as a major contributing factor for worldwide amphibian declines. Although relatively recently described, the impacts from the disease this pathogen causes have been definitively tied to amphibian declines, including some that occurred decades ago. In some cases, declines of individual species occurred with little documentation and are thus poorly understood. The relict leopard frog (Rana onca = Lithobates onca) has experienced such a decline and by the latter part of the 20th century only occurred in two general areas in southern Nevada. Recent research has found …


Catalinia, A New Scorpion Genus From Southern California, Usa And Northern Baja California, Mexico (Scorpiones: Vaejovidae), Michael E. Soleglad, Richard F. Ayrey, Matthew R. Graham, Victor Fet Nov 2017

Catalinia, A New Scorpion Genus From Southern California, Usa And Northern Baja California, Mexico (Scorpiones: Vaejovidae), Michael E. Soleglad, Richard F. Ayrey, Matthew R. Graham, Victor Fet

Victor Fet

Genus Catalinia, gen. nov. (Scorpiones: Vaejovidae) is described from southern California, USA and Baja California, Mexico. The genus is composed of four species formerly placed in Pseudouroctonus: Catalinia minima (Kraepelin, 1911), comb. nov. (type species), C. andreas (Gertsch et Soleglad, 1972), comb. nov., C. castanea (Gertsch et Soleglad, 1972), comb. nov., and C. thompsoni, comb. nov. (Gertsch et Soleglad, 1972). Major diagnostic characters of Catalinia include a carapace with a very weak anterior indentation, a very stout metasoma with little or no tapering from segment I to V, and a mating plug with two partial bases. Evidence is presented suggesting …


All Roads Lead To Weediness: Stories About Weedy Rice Origins, Weedy Genes And Weed Competitiveness, Zhongyun Huang Nov 2017

All Roads Lead To Weediness: Stories About Weedy Rice Origins, Weedy Genes And Weed Competitiveness, Zhongyun Huang

Doctoral Dissertations

Weedy rice (Oryza spp.), a weedy relative of cultivated rice (O.sativa), infests and persists in cultivated rice fields worldwide. Many weedy rice populations have evolved similar adaptive traits, considered part of the ‘agricultural weed syndrome’, making this an ideal model to study the genetic basis of parallel evolution. Using population genetics analyses of South Asian and US weedy rice, my research reveals multiple independent evolution events giving rise to weed groups in the two geographic areas. Weeds in South Asia have highly heterogenous genetic backgrounds, with contributions from both cultivated varieties (aus and indica) …


Cryptic Diversity And Discordance In Single‐Locus Species Delimitation Methods Within Horned Lizards (Phrynosomatidae: Phrynosoma), Christopher Blair, Robert W. Bryson Jr. Nov 2017

Cryptic Diversity And Discordance In Single‐Locus Species Delimitation Methods Within Horned Lizards (Phrynosomatidae: Phrynosoma), Christopher Blair, Robert W. Bryson Jr.

Publications and Research

Biodiversity reduction and loss continues to progress at an alarming rate, and thus there is widespread interest in utilizing rapid and efficient methods for quantifying and delimiting taxonomic diversity. Single-locus species-delimitation methods have become popular, in part due to the adoption of the DNA barcoding paradigm. These techniques can be broadly classified into tree-based and distance-based methods depending on whether species are delimited based on a constructed genealogy. Although the relative performance of these methods has been tested repeatedly with simulations, additional studies are needed to assess congruence with empirical data. We compiled a large data set of mitochondrial ND4 …


Response To Nitrogen And Salinity Conditions In Rhizophora Mangle Seedlings Varies By Site Of Origin, Kristen L. Langanke Oct 2017

Response To Nitrogen And Salinity Conditions In Rhizophora Mangle Seedlings Varies By Site Of Origin, Kristen L. Langanke

USF Tampa Graduate Theses and Dissertations

Many coastal plant species thrive across a range of environmental conditions, often displaying dramatic phenotypic variation in response to environmental variation. We characterized the response of the critical foundation species Rhizophora mangle L. to full factorial combinations of salt and nitrogen (N). We used seedlings collected from five populations and measured traits related to salt tolerance and N amendment. The response to increasing salt included significant plasticity in succulence, leaf mass area (LMA), and root to shoot ratio (R:S). Seedlings also showed overall reduced maximum photosynthetic rate in response to N amendment, but this response depended on the level of …


Catalinia, A New Scorpion Genus From Southern California, Usa And Northern Baja California, Mexico (Scorpiones: Vaejovidae), Michael E. Soleglad, Richard F. Ayrey, Matthew R. Graham, Victor Fet Oct 2017

Catalinia, A New Scorpion Genus From Southern California, Usa And Northern Baja California, Mexico (Scorpiones: Vaejovidae), Michael E. Soleglad, Richard F. Ayrey, Matthew R. Graham, Victor Fet

Euscorpius

Genus Catalinia, gen. nov. (Scorpiones: Vaejovidae) is described from southern California, USA and Baja California, Mexico. The genus is composed of four species formerly placed in Pseudouroctonus: Catalinia minima (Kraepelin, 1911), comb. nov. (type species), C. andreas (Gertsch et Soleglad, 1972), comb. nov., C. castanea (Gertsch et Soleglad, 1972), comb. nov., and C. thompsoni, comb. nov. (Gertsch et Soleglad, 1972). Major diagnostic characters of Catalinia include a carapace with a very weak anterior indentation, a very stout metasoma with little or no tapering from segment I to V, and a mating plug with two partial bases. …


Prebiotic Rna Network Formation: A Taxonomy Of Molecular Cooperation, Cole Mathis, Sanjay N. Ramprasad, Sara Imari Walker, Niles Lehman Oct 2017

Prebiotic Rna Network Formation: A Taxonomy Of Molecular Cooperation, Cole Mathis, Sanjay N. Ramprasad, Sara Imari Walker, Niles Lehman

Chemistry Faculty Publications and Presentations

Cooperation is essential for evolution of biological complexity. Recent work has shown game theoretic arguments, commonly used to model biological cooperation, can also illuminate the dynamics of chemical systems. Here we investigate the types of cooperation possible in a real RNA system based on the Azoarcusribozyme, by constructing a taxonomy of possible cooperative groups. We construct a computational model of this system to investigate the features of the real system promoting cooperation. We find triplet interactions among genotypes are intrinsically biased towards cooperation due to the particular distribution of catalytic rate constants measured empirically in the real system. For other …


A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti Oct 2017

A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti

Konstantin Läufer

As sequencing technologies continue to drop in price and increase in throughput, new challenges emerge for the management and accessibility of genomic sequence data. We have developed a pipeline for facilitating the storage, retrieval, and subsequent analysis of molecular data, integrating both sequence and metadata. Taking a polyglot approach involving multiple languages, libraries, and persistence mechanisms, sequence data can be aggregated from publicly available and local repositories. Data are exposed in the form of a RESTful web service, formatted for easy querying, and retrieved for downstream analyses. As a proof of concept, we have developed a resource for annotated HIV-1 …


The North American Quails, Partridges, And Pheasants, Paul A. Johnsgard Oct 2017

The North American Quails, Partridges, And Pheasants, Paul A. Johnsgard

Zea E-Books Collection

This book documents the biology of six species of New World quails that are native to North America north of Mexico (mountain, scaled, Gambel’s, California, and Montezuma quails, and the northern bobwhite), three introduced Old World partridges (chukar, Himalayan snowcock, and gray partridge), and the introduced common (ring-necked) pheasant. Collectively, quails, partridges, and pheasants range throughout all of the continental United States and the Canadian provinces. Two of the species, the northern bobwhite and ring-necked pheasant, are the most economically important of all North American upland game birds. All of the species are hunted extensively for sport and are highly …


Handicap Principle Implies Emergence Of Dimorphic Ornaments, Sara Clifton, Daniel M. Abrams, Rosemary I. Braun Oct 2017

Handicap Principle Implies Emergence Of Dimorphic Ornaments, Sara Clifton, Daniel M. Abrams, Rosemary I. Braun

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.


The Effects Of Evolution On Food Web Diversity And Abundance, Rosalyn Rael Oct 2017

The Effects Of Evolution On Food Web Diversity And Abundance, Rosalyn Rael

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.


How Metamorphosis Is Different In Plethodontids: Larval Life History Perspectives On Life-Cycle Evolution, Christopher K. Beachy, Travis Ryan, Ronald M. Bonett Oct 2017

How Metamorphosis Is Different In Plethodontids: Larval Life History Perspectives On Life-Cycle Evolution, Christopher K. Beachy, Travis Ryan, Ronald M. Bonett

Scholarship and Professional Work - LAS

Plethodontid salamanders exhibit biphasic, larval form paedomorphic, and direct developing life cycles. This diversity of developmental strategies exceeds that of any other family of terrestrial vertebrate. Here we compare patterns of larval development among the three divergent lineages of biphasic plethodontids and other salamanders. We discuss how patterns of life-cycle evolution and larval ecology might have produced a wide array of larval life histories. Compared with many other salamanders, most larval plethodontids have relatively slow growth rates and sometimes exceptionally long larval periods (up to 60 mo). Recent phylogenetic analyses of life-cycle evolution indicate that ancestral plethodontids were likely direct …


Is Cooperative Memory Special? The Role Of Costly Errors, Context, And Social Network Size When Remembering Cooperative Actions, Jeffrey R. Stevens, Tim Winke Oct 2017

Is Cooperative Memory Special? The Role Of Costly Errors, Context, And Social Network Size When Remembering Cooperative Actions, Jeffrey R. Stevens, Tim Winke

Jeffrey Stevens Publications

Theoretical studies of cooperative behavior have focused on decision strategies, such as tit-for-tat, that depend on remembering a partner’s last choices. Yet, an empirical study by Stevens et al. (2011) demonstrated that human memory may not meet the requirements that needed to use these strategies. When asked to recall the previous behavior of simulated partners in a cooperative memory task, participants performed poorly, making errors in 10–24% of the trials. However, we do not know the extent to which this task taps specialized cognition for cooperation. It may be possible to engage participants in more cooperative, strategic thinking, which may …


A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti Sep 2017

A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti

Catherine Putonti

As sequencing technologies continue to drop in price and increase in throughput, new challenges emerge for the management and accessibility of genomic sequence data. We have developed a pipeline for facilitating the storage, retrieval, and subsequent analysis of molecular data, integrating both sequence and metadata. Taking a polyglot approach involving multiple languages, libraries, and persistence mechanisms, sequence data can be aggregated from publicly available and local repositories. Data are exposed in the form of a RESTful web service, formatted for easy querying, and retrieved for downstream analyses. As a proof of concept, we have developed a resource for annotated HIV-1 …


Clusters Of Alpha Satellite On Human Chromosome 21 Are Dispersed Far Onto The Short Arm And Lack Ancient Layers, William Ziccardi, Chongjian Zhao, Valery Shepelev, Lev Uralsky, Ivan Alexandrov, Tatyana Andreeva, Evgeny Rogaev, Christopher Bun, Emily Miller, Catherine Putonti, Jeffrey Doering Sep 2017

Clusters Of Alpha Satellite On Human Chromosome 21 Are Dispersed Far Onto The Short Arm And Lack Ancient Layers, William Ziccardi, Chongjian Zhao, Valery Shepelev, Lev Uralsky, Ivan Alexandrov, Tatyana Andreeva, Evgeny Rogaev, Christopher Bun, Emily Miller, Catherine Putonti, Jeffrey Doering

Catherine Putonti

Human alpha satellite (AS) sequence domains that currently function as centromeres are typically flanked by layers of evolutionarily older AS that presumably represent the remnants of earlier primate centromeres. Studies on several human chromosomes reveal that these older AS arrays are arranged in an age gradient, with the oldest arrays farthest from the functional centromere and arrays progressively closer to the centromere being progressively younger. The organization of AS on human chromosome 21 (HC21) has not been well-characterized. We have used newly available HC21 sequence data and an HC21p YAC map to determine the size, organization, and location of the …


There’S More Than One Way To Climb A Tree: Limb Length And Microhabitat Use In Lizards With Toe Pads, Travis J. Hagey, Scott Hart, Matthew Vickers, Luke J. Harmon, Lin Schwarzkopf Sep 2017

There’S More Than One Way To Climb A Tree: Limb Length And Microhabitat Use In Lizards With Toe Pads, Travis J. Hagey, Scott Hart, Matthew Vickers, Luke J. Harmon, Lin Schwarzkopf

Biology

Ecomorphology links microhabitat and morphology. By comparing ecomorphological associations across clades, we can investigate the extent to which evolution can produce similar solutions in response to similar challenges. While Anolis lizards represent a well-studied example of repeated convergent evolution, very few studies have investigated the ecomorphology of geckos. Similar to anoles, gekkonid lizards have independently evolved adhesive toe pads and many species are scansorial. We quantified gecko and anole limb length and microhabitat use, finding that geckos tend to have shorter limbs than anoles. Combining these measurements with microhabitat observations of geckos in Queensland, Australia, we observed geckos using similar …


The Genetic And Environmental Basis For Chc Biosynthesis In Drosophila, Heather Ke Ward Sep 2017

The Genetic And Environmental Basis For Chc Biosynthesis In Drosophila, Heather Ke Ward

Electronic Thesis and Dissertation Repository

Cuticular hydrocarbons (CHCs) are produced by insects and primarily used to prevent desiccation. In Drosophila, certain compounds have secondary roles as infochemicals that may act during courtship to influence mate choice. Certain CHCs may stimulate courtship with heterospecifics or act to repel conspecifics. The CHC profile produced by an individual is the result of the interaction between its genetic background and the environment, though the genes that underlie species differences in CHC production and how the environment can modulate the abundance of individual compounds within a species is not well known. Here, candidate gene CG5946 was found to be …


The Second Record Of A Relict Akrav Israchanani Levy, 2007 (Scorpiones: Akravidae) From Levana Cave, Israel, Victor Fet, Michael E. Soleglad, Sergei L. Zonstein, Israel Naaman, Shlomi Lubaton, Boaz Langford, Amos Frumkin Sep 2017

The Second Record Of A Relict Akrav Israchanani Levy, 2007 (Scorpiones: Akravidae) From Levana Cave, Israel, Victor Fet, Michael E. Soleglad, Sergei L. Zonstein, Israel Naaman, Shlomi Lubaton, Boaz Langford, Amos Frumkin

Victor Fet

We report the remnants of five new scorpion specimens discovered dead in Levana Cave in Israel in December 2015. We confirm that they belong to the relict scorpion Akrav israchanani Levy, 2007 (Akravidae), famously described from the neighboring Ayyalon Cave, also from dead specimens. The details of morphology of the new specimens are given; they match completely the characters of A. israchanani redescribed by Fet, Soleglad & Zonstein (2011). This second record indicates a wider distribution of this unique cave scorpion, which, however, is extinct in both caves. There is still no evidence that live populations of this species exist.


The Inconvenient Truth About Thinking Chickens, Lori Marino Sep 2017

The Inconvenient Truth About Thinking Chickens, Lori Marino

Animal Sentience

Original Abstract: Domestic chickens are members of an order, Aves, which has been the focus of a revolution in our understanding of neuroanatomical, cognitive, and social complexity. Some birds are now known to be on a par with many mammals in their intelligence, emotional sophistication, and social interaction. Yet views of chickens have largely remained unrevised in light of this new evidence. In this paper, I examine the data on cognition, emotions, personality, and sociality in chickens, exploring such areas as self-awareness, cognitive bias, social learning and self-control, and comparing their abilities with other birds and other vertebrates, particularly …


Comparative Phylogeographic, Population Genomic, And Selection Inference With Development Of Hierarchical Co-Demographic Models, Alexander Xue Sep 2017

Comparative Phylogeographic, Population Genomic, And Selection Inference With Development Of Hierarchical Co-Demographic Models, Alexander Xue

Dissertations, Theses, and Capstone Projects

Comparing demographic histories across assemblages of populations, species, and sister pairs has been a focus in phylogeography since its inception. Initial approaches utilized organelle genetic data and involved qualitative comparisons of genetic patterns for evaluating hypotheses of shared evolutionary responses to past environmental changes. This endeavor has progressed with coalescent model-based statistical techniques and advances in next-generation sequencing, yet there remains a need for methods that can analyze aggregated genomic-scale data from non-model organisms within a unified framework that considers individual taxon uncertainty and variance. To this end, the aggregate site frequency spectrum (aSFS), an expansion of the site frequency …