Life Sciences Commons^™

Incorporating Biodiversity-Ecosystem Function Relationships Into Models And Conservation Planning, Sarah R. Weiskopf

Doctoral Dissertations

Unsustainable use of nature and climate change are leading to unprecedented biodiversity declines. These declines have cascading impacts on ecosystem function and ecosystem services, and ultimately on human well-being. International agreements have been adopted that aim to address both crises. The Paris Agreement, adopted in 2015, set global emission reductions targets. In 2022, most countries agreed to the Kunming-Montreal Global Biodiversity Framework (GBF). The GBF sets 23 ambitious targets for 2030 ranging from reducing threats to biodiversity, meeting people’s needs through sustainable use and benefit sharing, and solutions for implementation. Although adopting global goals and targets is an important first …

The Detectability Of Atlantic Salmon (Salmo Salar) Microsatellite And Mitochondrial Environmental Dna, Simone N. Miklosi

Electronic Thesis and Dissertation Repository

Little is known about what information can be gathered from microsatellite eDNA. It is important to gain a deeper understanding of the detectability and analysis of microsatellite eDNA because it could provide information about population size that mitochondrial eDNA cannot. Water samples were collected from tank and river experiments, and rivers known to contain Atlantic salmon (Salmo salar) and analyzed for Atlantic salmon mitochondrial and microsatellite eDNA. Mitochondrial eDNA was detected from all the tank experiments and 10 out of 15 rivers known to contain Atlantic salmon. Microsatellite eDNA was detected from all the tank experiments and none …

Effects Of Large Wood Additions On Basal Resources, Macroinvertebrates, And Ecosystem Processes In The Narraguagus River, Maine, Val Watson

Electronic Theses and Dissertations

Ecological restoration is an increasingly common practice across ecosystems, and current practices aim to restore the biological and physical processes underlying ecosystem function, often for the sake of endangered higher-level consumers. Studies of restoration outcomes often report few or inconsistent ecological changes, and monitoring of restoration projects rarely measures ecological processes. Monitoring also usually measures outcomes at a single scale, despite the prevalence of scale- dependent phenomena across ecosystems. My thesis uses measurements of ecological processes to assess restoration response and evaluates responses across multiple scales. I focus here on a long-term large wood addition project on the Narraguagus River …

Influence Of Abiotic Drivers And Plant Community Interactions On Bald Cypress (Taxodium Distichum) Seedlings: Implications For Restoration, Victoria Ellis

Biological Sciences Theses & Dissertations

Forested freshwater wetlands are valuable ecosystems that provide habitat for numerous species, sequester carbon, and act as sinks for excess water and nutrients. Historically, these ecosystems have been heavily degraded by anthropogenic activities leading to loss of ecosystem services and a desire to restore freshwater forested wetland habitat. Thus, science-backed approaches for the restoration of freshwater forested wetlands are necessary to ensure restoration goals are met. This body of research employed the Stress Gradient Hypothesis to test whether a multi-species planting approach using Juncus effusus (L.) (soft rush) could facilitate the survival of Taxodium distichum (L.) Rich. (bald cypress) seedlings …

Overcoming Barriers To Aquatic Plant Restoration: Addressing Gaps In Species Identification And Planting Techniques In The Intermountain West, Kate A. Sinnott

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Aquatic ecosystems provide many critical and economically valuable benefits, including drinking water, food, recreational opportunities, and water supply for irrigation and agriculture. However, the health of these systems has been severely impacted by human activities such as pollution, land conversion, and introductions of harmful species. Restoring native aquatic plants can help reverse this damage and reestablish benefits, though it is not a common practice. With an objective to increase capacity for aquatic plant restoration in the Intermountain West, I identified and addressed two major barriers: 1) a lack of confidence in aquatic species identification among wetland professionals, and 2) underdeveloped …

Comparisons Of Above- And Below-Ground Carbon Storage In A Northeastern Illinois Urban Forest Following Rhamnus Cathartica And Fraxinus Spp. Removal, River Sanchez-Dudik, Elene Drosos

DePaul Discoveries

This study focused on quantifying potential differences in ecosystem services (carbon storage, soil organic matter, macroarthropod density) in a small, partially restored urban forest in order to determine if common buckthorn and standing dead ash removal effects can be detected while restoration is on-going. We calculated aboveground carbon storage (tons/total area) using whole tree biomass equations and compared this to i-Tree Canopy estimations. We collected SOM through loss-on-ignition and collected macroinvertebrates by pitfall trapping to determine differences along transects. Aboveground carbon storage, soil organic matter, and macroinvertebrate total results for this study were found to be statistically not significant, indicating …

Long Term Monitoring Of Grand Ravines Park Restoration: An Authentic Research Opportunity For Jenison High School Students And Beyond, Karina C. White

Culminating Experience Projects

Access to authentic research is limited at the 7-12 science education level. At the same time, many local restoration projects would benefit from, but don’t have access to a long-term system of monitoring. This project seeks to unite those two needs by developing a protocol for 7-12 classrooms to be able to participate in authentic research through long-term monitoring of a local restoration project. The protocol developed in this project was used by Jenison High School students at Grand Ravines Park. Grand Ravines Park is a recently acquired Ottawa County park with a history of anthropogenic disturbances. Shortly after the …

Creating A Mass-Balanced Food Web Model For A Generalized Restored Estuary In Puget Sound, Penelope Johnson

WWU Honors College Senior Projects

Historical anthropogenic modifications have been documented to have negative effects on the estuarine environments of Puget Sound. Over the last three decades there has been an increase in efforts to restore these estuarine environments through both passive and active means. This increase in restoration has been predicted to have positive effects on survival of juvenile Chinook salmon, which is an ecologically and culturally important species in the Salish Sea. The goal of this project was to use Ecopath with Ecosim to create a mass-balanced food web model of a generalized restored estuary to help further understanding of the potential effects …

Soil And Compost Tea: A New Restoration Technique?, Carol E. Day

Master's Theses and Doctoral Dissertations

Historically, prairie restorations have lacked the plant diversity seen in remnant prairies. Most restoration practices focus on reestablishing the plant community but overlook the soil microbial community even though microbes are critical to habitat functioning. Developing techniques that increase soil microbes in prairie restorations is critical to ensuring diverse restored habitats. We compared how microbial communities differed between remnant and restored prairie sites. We also investigated if soil and compost teas could be used to reintroduce microbes to restored prairie soil and if the teas affected native plant establishment. We found significant differences in the levels of bacterial taxa between …

Developing Best Practices For The Propagation Of Spartina Alterniflora For Use In Salt Marsh Restortaion, Justin Hinson

Electronic Theses and Dissertations

Coastal salt marshes are valuable ecosystems under threat from climate change and sea level rise. Living shorelines offer a promising solution, often incorporating the foundational salt marsh species Spartina alterniflora due to its ability to tolerate natural stressors and maintain sediment stability. However, research suggests that seed-based propagation protocols should be developed on a local scale due to the genetic heterogeneity within and between S. alterniflora populations. Here, we attempt to contribute to the development of one such protocol for coastal Georgia S. alterniflora.

In Fall 2021, seeds were collected bi-monthly from four marshes of varying ocean proximity and …

The Role Of Machine Learning And Network Analyses In Understanding Microbial Composition In An Experimental Prairie, Ali Eastman Oku

Graduate Research Theses & Dissertations

Machine learning and network analyses are powerful modern tools can process and map out connections between large amount of ecological data from complex environmental communities. Random forests, an ensemble machine learning algorithm, are particularly powerful as they can capture complex patterns in data while remaining easily interpretable. These tools are specifically useful in experimental settings where different types of data are collected. The aim of this study was to demonstrate the utility of machine learning models and network analyses at analyzing diverse ecological data from dynamic plant-soil microbial communities in a prairie ecosystem. Our experimental system is an experimental prairie …

Assessment Of Living Shorelines For Restoring Fish Habitats: A Case Study From Coastal Alabama, Claire Legaspi, Matheus De Barros, Alexandra Rodriguez, Ronald Baker

Gulf and Caribbean Research

No abstract provided.

Exploring Beaver-Facilitated Restoration In Grassland Channelized Streams, Jessica L. Sikora

Graduate Research Theses & Dissertations

Freshwater streams provide vital ecosystem services, but their ecological function is gravely impacted by agricultural practices especially in grassland ecosystems. Though there is evidence that the re-introduction of beavers can help restore the ecological function of streams, little is known about their restorative impacts in grasslands. At Nachusa Grasslands Preserve in Franklin Grove, IL, we investigated the presence and impact of beaver dams on their waterways. With increasing beaver dam volume, we found an increase in sediment retention and less sediment retention with increasing beaver dams upstream from a dam. Though we did not find evidence that beaver dam volume …

Assessing The Efficacy Of Beaver Dam Analogs In Willow Restoration, Hannah Hill, Dylan Ritter

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Willow establishment is a necessary objective of stream restoration due to their role in bank stabilization, stream shading, and enhancement of biodiversity across the riparian zone. However, anecdotal observation indicated that establishment on beaver dam analogue (BDA) restored streams may be lacking. BDA’s mimic the pooling effects of natural beaver structures and are intended to help recreate historic conditions that existed before beaver extirpation. When working as intended, ecosystem function is restored, and a major aspect of this is willow presence. Because of these observations, as well as limited information on willow recruitment following restoration, we ask the following questions. …

Quantifying The Effect Of Disturbance On Native Mojave Desert Shrubs, Tamara J. Wynne

UNLV Theses, Dissertations, Professional Papers, and Capstones

Disturbance can come in many different forms. In our studies, we looked at the impact of a solar photovoltaic facility on native plants growing inside and outside of the facility, alteration in precipitation (simulated) on four native shrubs and the impact of applying supplemental water as a function of volume and frequency to establish native shrubs such as might occur at restoration sites. Disturbance is becoming a more common phenomenon in many ecosystems throughout the world, increasing the need for studies that quantify the impact at the plant and ecosystem level. Each research project revealed different plant responses, such as …

Community-Powered Urban Stream Restoration: A Vision For Sustainable And Resilient Urban Ecosystems, Mateo Scoggins, Derek B. Booth, Tim Fletcher, Megan Fork, Ana Gonzalez, Rebecca L. Hale, Robert J. Hawley, Allison H. Roy, Erika E. Bilger, Nick Bond, Matthew James Burns, Kristina G. Hopkins, Kate H. Macneale, Eugenia Marti, Kyle S. Mckay, Martin W. Neale, Michael J. Paul, Blanca Rios-Touma, Kathryn L. Russell, Robert F. Smith, Staryn Wagner, Seth Wenger

Biology Faculty Publications

Urban streams can provide amenities to people living in cities, but those benefits are reduced when streams become degraded, potentially even causing harm (disease, toxic compounds, etc.). Governments and institutions invest resources to improve the values and services provided by urban streams; however, the conception, development, and implementation of such projects may not include meaningful involvement of community members and other stakeholders. Consequently, project objectives may be misaligned with community desires and needs, and projects may fail to achieve their goals. In February 2020, the 5(th) Symposium on Urbanization and Stream Ecology, an interdisciplinary meeting held every 3 to 5 …

Hydrodynamic Limitations To Mangrove Seedling Retention In Subtropical Estuaries, Kelly M. Kibler, Christian Pilato, Linda Walters, Melinda Donnelly, Jyotismita Taye

Flow-biota Interaction and Natural Infrastructure Design

Mangrove forest sustainability hinges upon propagule recruitment and seedling retention. This study evaluates biophysical limitations to mangrove seedling persistence by measuring anchoring force of two mangrove species (Rhizophora mangle and Avicennia germinans). Anchoring force was measured in 362 seedlings via lateral pull-tests administered in mangrove forests of two subtropical estuaries and in laboratory-based experiments. Removal mechanism varied with seedling age: newly-established seedlings failed due to root pull-out while seedlings older than 3 months failed by root breakage. Anchoring force of R. mangle seedlings was consistently and significantly greater than A. germinans (GLM: p = 0.002), however force to …

Identifying Key Stream Restoration Variables In An Agriculturally Impaired Chesapeake Bay Watershed, Julia Portmann

Masters Theses, 2020-current

The Chesapeake Bay watershed spans several states, supports diverse ecosystems, and is crucial to local economies. However, agricultural practices in this region impair water quality. The Smith Creek watershed, within the Shenandoah Valley, was designated a showcase watershed in 2010 by the United States Department of Agriculture to demonstrate the efficacy of implementing restoration projects. We sampled fifteen farms ranging from unrestored to thirty-six years since restoration. At each site, we conducted a kick-net survey for macroinvertebrates, measured canopy cover, algal density, substrate size, and bank height and angle. We identified macroinvertebrates to family and calculated the Chesapeake Basin-wide Index …

Effects Of Vegetation Heterogeneity On Multiphasic Treatment Outcomes In Sagebrush Steppe, Rebecca Donaldson

Boise State University Theses and Dissertations

Exotic annual grass invasion into western North America has led to significant loss of native perennials, altering the structure and function of sagebrush-steppe ecosystems. Monitoring and assessment of necessary restoration treatments have provided mixed evidence of success. We hypothesized that treatment outcomes would be influenced by restoration strategy (e.g., the timing of herbicide or drill seeding) and by within-treatment vegetation heterogeneity. We evaluated exotic annual grass and exotic perennial forb response to three replicate treatments of the pre-emergent herbicides indaziflam and imazapic, and a combination treatment of both herbicides, followed with the broadleaf herbicide, aminopyralid, at a highly invaded site …

"Biology 4920g: Benefits Of Ecological Restoration Techniques", Umama Karim, Olivia Tran, Winston Herold

Community Engaged Learning Final Projects

No abstract provided.

Quantitative Analysis Of Methodological And Environmental Influences On Survival Of Planted Mangroves In Restoration And Afforestation, Daniel Gorman, Mathew A. Vanderklift, Anna Lafratta

Research outputs 2022 to 2026

Mangrove planting has been employed for decades to achieve aims associated with restoration and afforestation. Often, survival of planted mangroves is low. Improving survival might be aided by augmenting the understanding of which planting methods and environmental variables most influence plant survival across a range of contexts. The aim of this study was to provide a global synthesis of the influence of planting methods and background environment on mangrove survival. This was achieved through a global meta-analysis, which compiled published survival rates for the period 1979–2021 and analyzed the influence of decisions about minimum spacing and which life stage to …

Conservation, Restoration, And Monitoring Plan For The Lower White River, Utah, Casey A. Pennock, William W. Macfarlane, Phaedra Budy, Justin Jimenez, Jerrad Goodell

Ecology Center Publications

In this report we present a conservation, restoration and monitoring plan for the lower White River, a major tributary of the Green River. The plan is intended to help guide conservation, restoration and management of the lower White River over the next several decades and is also developed as an adaptive management plan to facilitate learning. The recommended conservation and restoration actions are intended to maintain and enhance native riparian vegetation and instream habitat for native desert fishes including federally endangered Colorado Pikeminnow (Ptychocheilus lucius), federally endangered Razorback Sucker (Xyrauchen texanus), Speckled Dace (Rhinichthys osculus …

Microbial Community And Soil Responses To Land Management Practices In Remnant And Restored Tallgrass Prairies, Desirae Marie Klimek

Graduate Research Theses & Dissertations

Critical ecosystem functions, such as decomposition and nutrient cycling, are driven by microbial communities within soil. As such, it is important to examine the effect of restoration practices, such as the presence of native grazers and prescribed burning, on these microbes and the soil they inhabit. The Nachusa Grasslands provides a chronosequence of restored tallgrass prairies ranging in restoration age from 5 to 33 years, as well as remnant prairies, and agricultural fields. These sites were sampled seasonally from 2013-2020 and microbial ribosomal RNA genes were surveyed to characterize soil microbial communities and assess how common restoration practices affect these …

Anthropogenic Influences On The Decline, Restoration, And Eco-Evolutionary Dynamics Of Lake Superior’S Coaster Brook Trout, Austin Johnson

Dissertations, Master's Theses and Master's Reports

The coaster brook trout is a life history variant of the brook trout (Salvelinus fontinalis) that is characterized by either lake residency or migration between stream and lake habitats. Coaster brook trout were once widespread throughout Lake Superior and its tributaries, but populations declined sharply in the late 19^th and early 20^th centuries. Historically, brook trout were a popular target of recreational and subsistence fishing in the Lake Superior basin, and it has been hypothesized that angling pressure combined with multiple forms of industrial development are what drove the coaster brook trout’s decline. In the mid …

Wetland Restoration Efforts Result In Increasing Phylogenetic Diversity, Nicholas T. Foster

Graduate Research Theses & Dissertations

Over the course of ecological restoration efforts, it has been observed that, despite restoration activities, species richness sometimes declines in a given habitat. While this response can be interpreted to mean that restoration activities are ineffective, other measures known as Phylogenetic Diversity Metrics can show that the community is actually becoming more diverse. Utilizing plant inventories collected as transect data from 1992-2021 of five wetland sites under various types of restoration in northern Illinois, a regional wetland community phylogeny was assembled. The community phylogeny was then analyzed for phylogenetic diversity measures through this 30-year period across the five sites. Additionally, …

Underwater Video As A Tool To Quantify Fish Density In Complex Coastal Habitats, Ronald Baker, Dakota Bilbrey, Aaron Bland, Frank D’Alonzo Iii, Hannah Ehrmann, Sharon Havard, Zoe Porter, Sarah Ramsden, Alexandra Rodriquez

University Faculty and Staff Publications

Habitat loss is a serious issue threatening biodiversity across the planet, including coastal habitats that support important fish populations. Many coastal areas have been extensively modified by the construction of infrastructure such as ports, seawalls, docks, and armored shorelines. In addition, habitat restoration and enhancement projects often include constructed breakwaters or reefs. Such infrastructure may have incidental or intended habitat values for fish, yet their physical complexity makes quantitatively sampling these habitats with traditional gears challenging. We used a fleet of unbaited underwater video cameras to quantify fish communities across a variety of constructed and natural habitats in Perdido and …

Phosphorus Dynamics In Restored Riparian Wetlands On Former Agricultural Land In Vermont, Adrian Robert Hendrick Wiegman

Graduate College Dissertations and Theses

Wetland restoration has numerous potential ecological and societal benefits, one of which is the retention of phosphorus (P) and consequent protection of downstream water bodies from eutrophication. Past studies focused on influents to and effluents from a variety of wetland types have documented net P retention. However, some wetland systems are less effective at P capture and wetland P retention capacity can change over time. Certain wetland types - especially riparian wetlands restored on former agricultural land - remain understudied. In Vermont, most of the over 4000 potential wetland restoration sites in the Lake Champlain Basin are located on current …

Re-Storying Grant Creek: A Case Study Of Relational Dynamics On A Degraded Montana Stream, Seamus Rucci Land

Graduate Student Theses, Dissertations, & Professional Papers

The UN Decade on Ecosystem Restoration began in 2021, and after a history of contentious ethical debates, ecological restoration is increasingly portrayed as a viable framework for combating environmental degradation and supporting more healthy and stable social-ecological systems. The proposed ecological restoration of Grant Creek, a degraded stream near Missoula, Montana, offers an opportunity to connect a restoration site to the broader, rapidly growing field of restoration practice. It also allows the opportunity to forward the ‘relational turn’ proposed by many in the sustainability sciences as an ontological and methodological means to move beyond positivist portrayals of social-ecological systems, which …

Efficacy Of Sediment Contaminant Remediation Of The Benthos In A Segment Of The Southern Branch Of The Elizabeth River, Colton Martin

Biological Sciences Theses & Dissertations

The bottom sediment of the Southern Branch of the Elizabeth River, a tributary of Chesapeake Bay, was historically contaminated with hydrocarbons from industrial sources especially wood treatment facilities. The Elizabeth River Project selected a section of the bottom off Money Point in the Southern Branch for a sediment contaminant remediation effort. Prior to initiation of remediation efforts, a survey occurred in summer 2010 to characterize the ecological condition of the benthic communities off Money Point compared to benthic communities of a benthic region across the channel and northwest of Money Point near Blows Creek. That study characterized the benthos of …

Connecting Communities To Coastal Resilience: Enhancing Sustainability Through Public Participation In Salt Marsh Management And Restoration In Suffolk County, Ny, Jennifer L. Mcgivern

Dissertations, Theses, and Capstone Projects

Coastal resiliency is becoming significantly more critical to the livelihood of coastal communities as the frequency and intensity of storm events increases and is exacerbated by rising sea levels due to climate change. In October 2012 Superstorm Sandy impacted the New York-New Jersey area costing over $70 billion in storm damages and 147 lives lost, as storm surges surpassed record highs for the region. Protruding more than 100 miles into the Atlantic Ocean with over 1,000 miles of shoreline, Long Island is particularly vulnerable to the increasingly ferocious and numerous storms as well as the rising sea levels that climate …