Life Sciences Commons^™

Using Novel And Traditional Survey Techniques To Monitor Small Mammal Species In Northwestern California, Sydney Mccluskey

Cal Poly Humboldt theses and projects

Small mammal species play a critical role in forest ecosystems contributing significantly to overall forest biodiversity and ecological dynamics. Forest-dwelling species are among the most vulnerable to habitat loss and fragmentation. It is essential to develop efficient techniques for monitoring small mammal populations in forested ecosystems to inform conservation efforts and management plans; yet, monitoring small mammals in these habitats can be particularly challenging due to their size, activity patterns, and frequently nocturnal nature. In this study, I aimed to address two primary research objectives: 1) compare the effectiveness of 3 distinct camera-trap survey techniques (i.e., ground, tree, and tube) …

A Four-Pronged Approach To Addressing A Wild Pig Invasion In A Bottomland And Upland Forested Landscape, Tyler Scott Evans

Theses and Dissertations

Among exotic species that are capable of invading, establishing, and reaching pest status, few pose the range of impacts to biotic (e.g., competition with native species, predation, herbivory, introduction of other exotics) and abiotic (e.g., soil, hydrology) ecosystem components that can be attributed to the wild pig (Sus scrofa). Despite the presence of wild pigs throughout the southeastern United States for centuries, new invasions continue to occur in previously uninhabited and often under-investigated landscapes, including bottomland and upland forests. The recent invasion of the Sam D. Hamilton Noxubee National Wildlife Refuge (hereafter, NNWR) in east-central Mississippi represents an …

The Importance Of Winter Dinoflagellate Blooms In Chesapeake Bay— A Missing Link In Bay Productivity, Nicole C. Millette, Sophie Clayton, Margaret R. Mulholland, Leah Gibala-Smith, Michael Lane

OES Faculty Publications

It is widely assumed that phytoplankton abundance and productivity decline during temperate winters because of low irradiance and temperatures. However, winter phytoplankton blooms commonly occur in temperate estuaries, but they are often undocumented because of reduced water quality monitoring in winter. The small body of in situ work that has been done on winter blooms suggests they can be of enormous consequence to ecosystems. However, because monitoring is often reduced or stopped altogether during winter, it is unclear how widespread these blooms are or how long they can last. We analyzed an over 30-year record of monthly phytoplankton monitoring samples …

Validation Of A Nutria (Myocastor Coypus) Environmental Dna Assay Highlights Considerations For Sampling Methodology, Anna M. Mangan, John A. Kronenberger, Ian H. Plummer

USDA Wildlife Services: Staff Publications

Nutria (Myocastor coypus) is a semiaquatic rodent species that is invasive across multiple regions within the United States. Here, we evaluated a qPCR assay previously described for use in Japan for application across invasive populations in the United States. We also compared two environmental DNA sampling methodologies for this assay: field filtration of large volumes of water passed through filters versus direct sampling of small volumes of water. We validated assay specificity, generality, and sensitivity, compared assay performance between two independent laboratories, and successfully tested the assay in situ on a known wild population. The filtration method required …

Towards Structured Planning And Learning At The State Fisheries Agency Scale, Caleb A. Aldridge

Theses and Dissertations

Inland recreational fisheries has grown philosophically and scientifically to consider economic and sociopolitical aspects (non-biological) in addition to the biological. However, integrating biological and non-biological aspects of inland fisheries has been challenging. Thus, an opportunity exists to develop approaches and tools which operationalize planning and decision-making processes which include biological and non-biological aspects of a fishery. This dissertation expands the idea that a core set of goals and objectives is shared among and within inland fisheries agencies; that many routine operations of inland fisheries managers can be regimented or standardized; and the novel concept that current information and operations can …

Results From Kentucky’S 10-Year Bobwhite Recovery Plan, Cody M. Rhoden, John J. Morgan, Ben A. Robinson, Gary Sprandel

National Quail Symposium Proceedings

The northern bobwhite (Colinus virginianus; hereafter, bobwhite) has experienced a precipitous population decline through almost all its historical range over the last 6 decades. We initiated a 10-year restoration plan in Kentucky, USA in 2008 and reported on it through 3 published “Road to Recovery” reports along with 30 peer-reviewed articles and abstracts, 2 technical documents, 7 theses or dissertations, and 11 popular literature pieces. Seven Quail Focus Areas were selected across the state based on site personnel, geographic position (east to west), and land ownership (e.g., private, public, state, federal) for monitoring and habitat management. The focus …

Landowner Cooperative Key To Success In The Bee Ridge Quail Focus Area, John A. Pinkowski, Beth A. Emmerich, William T. White

National Quail Symposium Proceedings

The Missouri Department of Conservation (MDC) began establishing Quail Focus Areas (QFAs) on private lands in 2004. The goal of QFAs is to increase and expand quail habitat management efforts around a core area. Because most (93%) of the landscape of Missouri, USA is in private ownership, habitat improvement programs on private lands have greater potential to impact quail populations than on public lands alone. A motivated group of landowners led the charge to begin habitat improvement efforts in the Bee Ridge QFA. This group was instrumental in starting earlier monitoring efforts to determine whether habitat improvements were leading to …

Habitat Works: How Partnerships And Habitat Improvement Have Restored Quail Populations In The 2c Quail Focus Area, E. Lee Metcalf, Beth A. Emmerich, William T. White

National Quail Symposium Proceedings

The Missouri Department of Conservation (MDC) began establishing Quail Focus Areas (QFAs) on private lands in 2004. The goal of QFAs was to bring groups of landowners together to manage bobwhite habitat on a larger scale in a targeted landscape. Through a variety of state, federal, and other partnership programs, habitat improvement efforts have resulted in large increases in northern bobwhite (Colinus virginianus; hereafter, bobwhite) numbers in the 2C QFA. In spring 2013, MDC staff and Quail Forever biologists began monitoring bobwhite and songbirds in a portion of the 2C QFA in Carroll County, Missouri, USA and in …

Pando's Pulse: Vital Signs Signal Need For Course Correction At World-Renowned Aspen Forest, Paul C. Rogers

Aspen Bibliography

Upland aspen (Populus spp.) forests contribute significantly to biodiversity in their circumboreal role as keystone species. As aspen ecosystems flourish or diminish, myriad dependent species follow suit. The 43-hectare Pando aspen (Populus tremuloides Michx.) clone in Utah, USA, is thought to be the largest living organism on earth, but is faltering due to chronic herbivory. Long-term resilience in aspen communities, including Pando, rests on successful recruitment of vegetative suckers that are nutritiously desirable to browsing ungulates. Here, I evaluate aspen reproduction alongside numerous vital indicators of Pando's status in the first trend assessment of this embattled iconic forest. …

Broadscale Outcome And Monitoring Assessment To Evaluate Protected Area Effectiveness In Northern Patagonia, Maria Daniela Rivarola

Doctoral Dissertations

Biomes worldwide have been affected by biodiversity loss and habitat degradation for more than a century. Protected Areas (PAs) have been established in almost every country, as they represent one of the most important tools in biodiversity conservation. Nevertheless, the relentless biodiversity loss trend has not stopped. Concern about PA effectiveness has risen, and several methods to evaluate it have been implemented over the last few decades. Nahuel Huapi National Park (NHNP) is the first PA in Argentina and one of the largest. The area is considered a biodiversity hotspot, and its conservation is essential, as unique ecological and evolutionary …

Can Plant Or Lichen Natural Abundance N-15 Ratios Indicate The Influence Of Oil Sands N Emissions On Bogs?, R. Kelman Wieder, Melanie A. Vile, Dale H. Vitt, Kimberli D. Scott, Bin Xu, James C. Quinn, Cara M. Albright

Public Health Sciences Faculty Publications

Study region: The 140,329 km(2 )Athabasca Oil Sands Administrative Area (OSAA), which contains 8982 km(2) of bogs. Since the late 1970s, N emissions from oil sands development in the OSAA have steadily increased, reaching over 80,000 metric tonnes yr(-1) in 2017.& nbsp;Study focus: If oil sands N emissions have distinct stable isotopic signatures, it may be possible to quantify the extent to which these emissions have affected N cycling in surrounding aquatic, wetland, and terrestrial ecosystems. To assess the potential for 15N as a tracer of oil sands N emissions, we measured natural abundance 15N ratios and tissue N concentrations …

The Influence Of Climate Change On The Ecology Of The Arctic Ground Squirrel In Denali National Park, Ak., Nigel A. Golden

Doctoral Dissertations

This dissertation research focuses on the ecology of the Arctic ground squirrel (Urocitellus parryii) in Denali National Park and Preserve, AK. The Arctic ground squirrels is a species of interest for monitoring efforts under the National Park Services’ Vital Signs Monitoring Program under the Vital Signs Monitoring program. The focus of this program is to monitor what is considered to be the most significant indicators of ecological conditions of the specific park resources that are of the greatest concern. The CAKN designated the Arctic ground squirrel (Urocitellus parryii) as one indicator species of park ecosystems. Despite being easy to observe …

Conservation, Restoration, And Monitoring Plan For The Lower White River, Utah, Casey A. Pennock, William W. Macfarlane, Phaedra Budy, Justin Jimenez, Jerrad Goodell

Ecology Center Publications

In this report we present a conservation, restoration and monitoring plan for the lower White River, a major tributary of the Green River. The plan is intended to help guide conservation, restoration and management of the lower White River over the next several decades and is also developed as an adaptive management plan to facilitate learning. The recommended conservation and restoration actions are intended to maintain and enhance native riparian vegetation and instream habitat for native desert fishes including federally endangered Colorado Pikeminnow (Ptychocheilus lucius), federally endangered Razorback Sucker (Xyrauchen texanus), Speckled Dace (Rhinichthys osculus …

Occurrence Of An Exotic Whitefly, Siphoninus Phillyreae (Haliday) (Hemiptera: Aleyrodidae) In South Korea And Its Potential Pathway Analysis, Seon Woo Lee, Hyun Jik Lee, Jun-Ran Kim, Soo-Jung Suh

Insecta Mundi

The ash whitefly, Siphoninus phillyreae (Haliday) (Hemiptera: Aleyrodidae), was first found in southern areas of South Korea during September 2019. During the survey of 2021, no additional specimens of the ash whitefly were found other than the previously reported regions. Attempts to trace a possible path­way for exotic ash whitefly suggested that this species probably followed pathways of illegal importation of infested plants from China or Japan and was unintentionally introduced into South Korea based on a survey-based study. This whitefly has not been intercepted at ports of entry to South Korea on imported plant material between 1999 and 2019 …

Addressing Challenges In Aggregating And Analyzing Agroecological Data, Sarah E. Mccord

Open Access Theses & Dissertations

Agroecosystems face multiple threats including land degradation and climate change, changing and competing land uses, invasive species and disease spread, and biodiversity loss. While scientists seek to understand rapidly changing ecosystems, land managers are struggling to maintain ecosystem services amid transitions to novel ecosystem states. Understanding agroecosystem drivers and ensuing responses requires quality information about ecosystems that span biomes, trophic scales, ecological processes, spatiotemporal scales, land use, and land ownership. Yet, using multi-scale agroecosystem information can be frustrating for both scientific researchers and land managers as it is difficult to locate data that are trustworthy, easily accessible, standardized, and connected …

Interdisciplinary Research Collaborative Trains Students To See Through Turbulent Systems, Kristina Cammen, Gabriella Marafino, Sarah Burton, Jillian Dow, Emma Dullaert, Madalyn Jorge, Kate Macolini, Louise Mcgarry, Christopher Tremblay, Jessica Jansujwicz, Tora Johnson, Lauren Ross, Gayle B. Zydlewski

Civil Engineering Faculty Scholarship

Despite the availability of interdisciplinary academic training programs, the practice of environmental science is often hampered by a lack of convergence across diverse disciplines. This gap is particularly salient in settings characterized by complex environmental issues, such as multiple-use coastal ecosystems. In response, we developed and implemented a training, research, and communication framework to provide undergraduates with an authentic operative experience working at the interface of interdisciplinary science and public decision-making within a case study of marine renewable energy. In our program, students gained hands-on experience with the scientific process and learned how to make information relevant, useful, and accessible …

Monitoring For Wolves, Jeff Hansen, Cat Urbigkit

Wildlife Damage Management Technical Series

Gray wolves (Canis lupus) and Mexican wolves (Canis lupus baileyi) once again roam across landscapes where they have been absent for decades (Figure 1). With wolf range expansion comes increased opportunities for conflicts when wolves harass or prey on domestic livestock or other animals. Wolves have relatively high reproductive and dispersal rates but detecting individual animals in low-density populations is difficult without a concerted monitoring effort. In fact, wolf presence in an area often is not known until there is a confirmed livestock depredation. Ranchers and wildlife damage management experts need not wait for livestock depredations to occur before wolves …

What Lies Beneath: Predicting Seagrass Below-Ground Biomass From Above-Ground Biomass, Environmental Conditions And Seagrass Community Composition, C. J. Collier, L. M. Langlois, Kathryn M. Mcmahon, J. Udy, M. Rasheed, E. Lawrence, A. B. Carter, M. W. Fraser, L. J. Mckenzie

Research outputs 2014 to 2021

© 2020 Seagrass condition, resilience and ecosystem services are affected by the below-ground tissues (BGr) but these are rarely monitored. In this study we compiled historical data across northern Australia to investigate biomass allocation strategies in 13 tropical seagrass species. There was sufficient data to undertake statistical analysis for five species: Cymodocea serrulata, Halophila ovalis, Halodule uninervis, Thalassia hemprichii, and Zostera muelleri. The response of below-ground biomass (BGr) to above-ground biomass (AGr) and other environmental and seagrass community composition predictor variables were assessed using Generalized Linear Models. Environmental data included: region, season, sediment type, water depth, proximity to land-based sources …

Small Unmanned Aircraft Systems Acoustic Analysis For Noninvasive Marine Mammal Response: An Exploratory Field Study, David Thirtyacre, Gennifer Brookshire, Sarah Callan, Brittany Arvizu, Patrick Sherman

International Journal of Aviation, Aeronautics, and Aerospace

As in countless other fields of human endeavor, small unmanned aircraft systems (sUAS) have the potential to benefit pinniped (Pinnipedia; e.g., Phocidae [seals], Otariidae [sea lions], and Odobenidae [walruses]) response efforts. The employment of sUAS could give responders a close-up look at animals in distress in order to determine their condition as well as develop a response strategy. However, unlike other subjects that are regularly inspected by sUAS (e.g., croplands and civil infrastructure) pinnipeds may respond to the distinctive sound generated by small, multirotor sUAS. This reaction may include retreating into the water en masse, which could put …

A Rapid Assessment Function To Estimate Common Raven Population Densities: Implications For Targeted Management, Brianne E. Brussee, Peter S. Coates, Shawn T. O'Neil, Seth J. Dettenmaier, Pat J. Jackson, Kristy B. Howe, David Delehanty

Human–Wildlife Interactions

Common raven (Corvus corax; raven) populations have increased over the past 5 decades within the western United States. Raven population increases have been largely attributed to growing resource subsidies from expansion of human enterprise. Concomitantly, managers are becoming increasingly concerned about elevated adverse effects on multiple sensitive prey species, damage to livestock and agriculture, and human safety. Managers could benefit from a rapid but reliable method to estimate raven densities across spatiotemporal scales to monitor raven populations more efficiently and inform targeted and adaptive management frameworks. However, obtaining estimates of raven density is data- and resource-intensive, which renders …

Feral Swine, Michael P. Glow, Nathan P. Snow, Kurt C. Vercauteren

Wildlife Damage Management Technical Series

Feral swine (Sus scrofa; Figure 1), also known as feral hogs, feral pigs, wild pigs, wild boar, or other similar derivations, are a non-native species considered to be one of the most destructive invasive terrestrial vertebrates in North America. While feral swine populations remained relatively small and confined in the continental United States following initial introductions by European explorers during the 15th century, substantial range expansion has occurred across every geographical region of the United States (Figure 2). This expansion has primarily been attributed to human-mediated movements, predominately for the purpose of establishing populations for recreational hunting, and facilitated by …

Autonomous Recording Units As An Alternative Method For Monitoring Songbirds, Lindsay Clough

Masters Theses

There is an increasing interest in the use of autonomous recording units as an alternative survey method to point count surveys conducted by human observers; however, questions remain about whether or not these recording units perform similarly to point count surveys and produce valid, comparable results. The use of individual listeners to transcribe the acoustic data collected by autonomous recording units is a common method for the analysis of recorded acoustic data, but potential variability among transcribers raises questions about the standardization of listening protocols to decrease inconsistencies in transcription results.

Autonomous recording units have been used to monitor birds …

A Guide To Integrate Plant Cover Data From Two Different Methods, David M. Burdick, Chris R. Peter

Jackson Estuarine Laboratory

There is a lack of consensus on how to monitor (measure) plant cover in tidal marshes. Multiple methods exist to estimate plant cover, which can confound interpretation when making comparisons across methods. Here, we provide a novel and more accurate approach, building off of traditional data transformations designed to integrate the two most common methods: Point Intercept and Ocular Cover.

Developing An Odonate-Based Index For Monitoring Freshwater Ecosystems In Rwanda: Towards Linking Policy To Practice Through Integrated And Adaptive Management, Erasme Uyizeye

Antioch University Dissertations & Theses

Worldwide, the decline of biodiversity in freshwater ecosystems is occurring at an alarming rate, due to anthropogenic threats, which directly impact humans in a variety of ways. Freshwater ecosystems occupy an integral part of political, socio-economic and ecological spheres. Integrated Watershed Management (IWM) and Adaptive Management (AM) conceptual frameworks provide an underpinning holistic platform from which to evaluate the performance of policies and actions on the ground in relation to freshwater ecosystem management. I investigate the extent to which environmental policies and practices embrace IWM and AM frameworks in Rwanda. Furthermore, this dissertation develops an odonate-based ecological monitoring tool, referred …

Guidelines For Aspen Restoration In Utah With Applicability To The Intermountain West, Stanley G. Kitchen, Patrick N. Behrens, Sherel K. Goodrich, Ashley Green, John Guyon, Mary O'Brien, David Tart

Aspen Bibliography

As highly productive and biologically diverse communities, healthy quaking aspen (Populus tremuloides; hereafter aspen) forests provide a wide range of ecosystem services across western North America. Western aspen decline during the last century has been attributed to several causes and their interactions, including altered fire regimes, drought, excessive use by domestic and wild ungulates, and conifer encroachment. Today’s managers need science-based guidance to develop and implement strategies and practices to restore structure, processes, and resilience to the full range of aspen functional types across multiple spatial scales. In these guidelines, we detail a process for making step-by-step decisions …

Designing Data Collection For Decision-Making: Shaping The Coastal First Nations Regional Monitoring System To Meet The Needs Of The Nations, Erica Olson, Brendan Connors, Lara Hoshizaki, Jana Kotaska, Darcy Pickard, Marc Nelitz, Amy Groesbeck, Jordan Benner, Katherine Kellock, Anton Pitts

Salish Sea Ecosystem Conference

The Coastal First Nations (CFN) Regional Monitoring System (RMS) was redeveloped to support decisions related to threats to ecological and cultural values, resulting from changes to existing and impending resource use on the North and Central Coast of British Columbia. As First Nations reassert their governance authority, participate in shared decision-making with other governments, undertake land and marine use planning, and manage their territories and resources, the need for coordinated regional monitoring efforts are increasingly important. We used a systematic and inclusive strategy to determine a suitable monitoring approach to meet the needs of a diverse group of Nations across …

Kelp Forest Dynamics: Links To Climate And Long Term Trends, Helen Berry, Cathy Pfister, Tom Mumford

Salish Sea Ecosystem Conference

Kelp forests are foundation species in the Salish Sea, and their dynamics are key to the fate of many other species. Research in other regions has shown that kelp abundance is driven in part by climate and can be impacted by human activities (for example, pollution and altered competition among species). While downward trends in kelp abundance have been of concern globally, trends are often locally distinct. We combined long term monitoring datasets and historical records to explore whether bull kelp (Nereocystis luetkeana) and giant kelp (Macrocystis pyrifera) dynamics in the Salish Sea region: 1) correlate with climate conditions, and …

Long-Term Monitoring In Central Puget Sound: Are Local Climate Anomalies Impacting Phytoplankton Populations?, Gabriela Hannach, Lyndsey M. Swanson, Kimberle Stark

Salish Sea Ecosystem Conference

Puget Sound is a large and productive estuarine system at the southern end of the Salish Sea. King County’s comprehensive, long-term marine monitoring program tracks water quality in Puget Sound’s Central Basin through year-round collection of data for a suite of physical, chemical and biological parameters. Phytoplankton monitoring began with traditional microscopy methods in 2008, and expanded to include a particle imaging system in 2014. These data are critical to assess how changes from climate, physical conditions and other stressors linked to anthropogenic activity from the region’s growing population may impact the Sound’s biodiversity and trophic structure. Currently, twice-monthly surface …

Monitoring And Enforcement Of Laws And Policies In Canada: The Bad, The Ugly And How We Can Get To Good, Christianne Wilhelmson

Salish Sea Ecosystem Conference

The creation of strong environmental laws in BC and Canada has improved over the years, however the implementation of these laws is often undermined and their effectiveness to protect ecosystems and communities suffers. The reasons are many but often it’s a question of underfunding of the monitoring and enforcement mechanisms that are necessary to ensure compliance. Other reasons, in particular for regulations that apply to marine and freshwater systems, is the lack of clarity around jurisdictional responsibility and accountability. The confusion around roles, exacerbated by poor communication, results in poor monitoring and response, and laws that are paper dragons only. …

The Wria 9 Marine Shoreline Monitoring And Compliance Project Phase 2, Kollin Higgins

Salish Sea Ecosystem Conference

This phase builds off of the pilot project undertaken in 2012-2013. The pilot project found many shoreline changes within the WRIA were not permitted, especially on Vashon and Maury Islands. Since the pilot project was completed, King County has undertaken an effort to bring the unpermitted issues found on Vashon and Maury Islands into compliance. The pilot project and King County’s follow on compliance efforts have created community awareness on the islands about the problem and issues around shoreline modifications. This phase will undertake a similar set of boat based surveys of the 92 miles of marine shoreline of Watershed …