Life Sciences Commons^™

Top-Down Vs Bottom-Up Effects On Predator-Prey Interactions In Aquatic Communities, Catherine Mary Mcclure

All Graduate Theses and Dissertations, Fall 2023 to Present

Ecology is studied at multiple scales to better understand how small changes at the individual level scale up to affect our ecosystems and global systems. These ecological scales include individuals (single organism), populations (group of organisms of the same species), communities (populations of different species interacting with each other), and ecosystems (species interacting with other species and their local environment). The research in this document is focused on the individual, population, and community scale. In particular, this research addresses questions regarding how changes in environmental conditions (i.e., predation and resources) affect species interactions which ultimately affects the composition of ecological …

Fractally Sampling Diversity-Environment Relationships To Understand Plant Assemblage Health Across Spatial Scales, Elizabeth G. Simpson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Humans influence the health of ecosystems and rely on healthy ecosystems to support their livelihoods and well-being. By looking at how the parts of ecosystems interact we can understand and improve ecosystem health. Ecosystem interactions change across spatial scales or different size patches of area. For example, individual organisms interact with each other at small spatial scales, while at large spatial scales, communities of organisms interact with weather conditions. However, many research studies do not look at how ecosystem interactions change across spatial scales. To address this gap in ecological research, I use a fractal sampling design which samples at …

Host-Microbe Interactions In Non-Native Estuarine Anemones: Biogeography And Temperature, Parker K. Lund

Cal Poly Humboldt theses and projects

Non-native species are increasing in prevalence around the world, resulting in negative economic and ecological impacts. However, the broad distributions of non-native species also offer a system for investigating the response of host-associated microbial communities to environmental factors across a range of ecological scales. At the broadest scale, I investigated the geography of microbial communities in the non-native estuarine anemone Diadumene lineata on the west coast of the United States of America. Across latitudes, microbial community composition was very similar and displayed a high percentage of Klebsiella spp. at all sites. However, the communities in California tended to exhibit higher …

Conservation Of Open-Canopy-Associated Wildlife: Multi-Scale Management Impacts On Imperiled Herpetofauna, Ethan Joseph Royal

Graduate Theses and Dissertations

The loss of open-canopy ecosystems throughout North America has precipitated declines in reptile and amphibian species associated with these habitat types. Current efforts to restore open-canopy ecosystems are underway in many areas, but the local distributions of, habitat characteristics required by and the effects of management actions on many herpetofauna species are poorly understood or entirely unknown. Research examining relationships among herpetofauna and their environments is often complicated by the extremely low detectability seen in many studies. We used landscape-scale, assemblage-level surveys to investigate the occupancy patterns and habitat associations of open-canopy-associated herpetofauna in two regions, as well as gain …

Biodiversity And Global Change In Terrestrial Ecosystems, Timothy J. Ohlert

Biology ETDs

Terrestrial ecosystems are critical to human and ecological processes but many gaps in our knowledge remain regarding how terrestrial plant communities assemble and respond to global change. I used field experiments distributed around the world, including long-term experiments from the Sevilleta National Wildlife Refuge (SNWR) in New Mexico and deserts of the southwestern U.S., to evaluate the consequences of drought and other abiotic stressors on plant communities. Dominant grasses were particularly important for the productivity and structure of grasslands at SNWR. In general, the structure of desert plant communities had high resistance to extreme drought, though grasses and other perennial …

Pilfering Passerines? Inter-Class Competition: A New Direction In Foraging Ecology, Shannon Gillen

Masters Theses, 2020-current

Life in the epigeal layer below leaf litterfall often goes unexplored. Shrews (Soricidae, 1910) have foraged in this microhabitat for millions of years, carving out an existence in harsh habitats around the world, ranging from the tropics to subarctic boreal tundra. Two shrew species that inhabit the Shenandoah Valley of Virginia, the least shrew (Cryptotis parva) and northern short-tailed shrew (Blarina brevicauda), were the focus of this study. Shrews make epigeal foraging trails while they continually forage for food, and caching is a way to save this food for times of low and sporadic food availability. …

Incorporating Human Effects In Quantifying Mechanisms Of Stream Fish Community Structure Using Metacommunity Theory, Lauren E. Stoczynski

All Dissertations

Metacommunity theory incorporates local and regional factors to understand how biotic communities are structured across the landscape. Despite established knowledge of how humans impact aquatic systems, inclusion of anthropogenic factors in metacommunity studies have been largely ignored. Additionally, alpha, beta, and gamma diversity can all be explored at the metacommunity level to investigate mechanistic drivers of community structure. Beta diversity can be further partitioned into turnover and richness difference components, each with different mechanistic drivers. Streams provide an excellent study system for metacommunity research because of the dendritic structure of watersheds and the natural delineation that watershed boundaries provide. Large-extent …

Risk-Prone And Risk-Averse Foraging Strategies Enable Niche Partitioning By Two Diurnal Orb-Weaving Spider Species, Mitchell D. Long

Electronic Theses and Dissertations

Niche partitioning is a major component in understanding community ecology and how ecologically similar species coexist. Temporal and spatial partitioning and differences in foraging strategy, including sensitivity to risk (variance), likely contribute to partitioning as well. Here, we approach this partitioning with fine resolution to investigate differences in overall strategy between two species of diurnal, orb-weaving spiders, Verrucosa arenata and Micrathena gracilis (Araneae: Araneidae), that share similar spatial positioning, temporal foraging window, and prey. Through field observation, we found that V. arenata individuals appear to increase spatial and temporal sampling to compensate for an overall risk-prone strategy that depends on …

Nitrogen Availability In Dune Systems And Its Effect On Root Fungal Endophyte Communities., Haley E. Sage

College of Arts & Sciences Senior Honors Theses

As global change persists, changes in resource availability can influence plant-microbe interactions. To understand how resource availability can influence these interactions and species diversity, I focused this research on how varying nitrogen (N) levels affect root endophyte communities in the plant species Ammophila breviligulata, an ecosystem engineer in the dune system. I analyzed the relationship between nitrogen addition and microbial community composition across 60 plots treated with three nitrogen addition levels (control, low, and high) in a long-term experimental field site in the Lake Michigan dunes. I identified Ammophila breviligulata's root endophyte community after creating a culture collection and …

Invasive Predators Affect Community-Wide Pollinator Visitation, Christina T. Liang, Aaron B. Shiels, William P. Haines, Manette E. Sandor, Clare E. Aslan

USDA Wildlife Services: Staff Publications

Disruption of plant–pollinator interactions by invasive predators is poorly understood but may pose a critical threat for native ecosystems. In a multiyear field experiment in Hawai’i, we suppressed abundances of globally invasive predators and then observed insect visitation to flowers of six native plant species. Three plant species are federally endangered (Haplostachys haplostachya, Silene lanceolata, Tetramolopium arenarium) and three are common throughout their range (Bidens menziesii, Dubautia linearis, Sida fallax). Insect visitors were primarily generalist pollinators, including taxa that occur worldwide such as solitary bees (e.g., Lasioglossum impavidum), social bees (e.g., …

Soil Invertebrates In Agriculture: Assessing Ecosystem Services, Biodiversity Impacts, And Farmer Perceptions, Eva Kinnebrew

Graduate College Dissertations and Theses

Harmonizing biological diversity and crop production is a major goal towards building more sustainable food systems. Soil invertebrates are diverse and abundant organisms in agriculture, but relatively little is known about their benefits or how agricultural management impacts them. In this dissertation, I dig into the complex interactions between agricultural land use and soil invertebrate biodiversity to better inform farmer decision-making. I find that soil invertebrate communities have major potential contributions to agroecosystems (Chapter 2) and are shaped heavily by agricultural land use (Chapters 3, 4), but remain too uncertain to contribute to farmers’ management choices (Chapter 5). First, I …

Host-Parasite Interactions Within Food Webs, Adam Zvanut Hasik

Graduate Theses and Dissertations

Parasitism is one of the most common life history strategies employed in nature, yet the effects of parasites are often thought to be minimal, and the vast majority of studies fail to consider parasites and their effects on host organisms. This is likely a problem, as the magnitude of parasite-mediated effects on their hosts can be quite large. Additionally, the effects of parasites are known to extend beyond the host to affect other species interactions. I used a series of approaches to gain a more integral understanding of host-parasite interactions by studying (1) the effects of parasites on biotic interactions …

Marine Phytoplankton Functional Types Exhibit Diverse Responses To Thermal Change, S. I. Anderson, A. D. Barton, Sophie Clayton, S. Dutkiewicz, T. A. Rynearson

OES Faculty Publications

Marine phytoplankton generate half of global primary production, making them essential to ecosystem functioning and biogeochemical cycling. Though phytoplankton are phylogenetically diverse, studies rarely designate unique thermal traits to different taxa, resulting in coarse representations of phytoplankton thermal responses. Here we assessed phytoplankton functional responses to temperature using empirically derived thermal growth rates from four principal contributors to marine productivity: diatoms, dinoflagellates, cyanobacteria, and coccolithophores. Using modeled sea surface temperatures for 1950-1970 and 2080-2100, we explored potential alterations to each group's growth rates and geographical distribution under a future climate change scenario. Contrary to the commonly applied Eppley formulation, our …

The Effects Of Multiple Stressors On Stream Communities: The Convergence Of Drought, Nutrient Pollution, And Invasive Species, Robert Joseph Fournier Iii

Graduate Theses and Dissertations

Freshwater systems experience multi-faceted degradation from a variety of ecological and environmental stressors. Three common stressors in these systems, drought, nutrient pollution, and invasive species, have wide-ranging effects on stream population- community- and ecosystem dynamics. We have a broad understanding of how each of these stressors works to influence stream systems independently. However, we still know relatively little about if, and how, these stressors might interact when they co-occur. Though drought is a natural part of many stream systems, all three of these stressors can be exacerbated or facilitated by anthropogenic actions. Accordingly, as human population and resource use continue …

Fish Community Composition And Structure Near A Freshwater River Diversion In Southeastern Louisiana, Rachel L. Snider

LSU Master's Theses

Gulf of Mexico estuaries, particularly in Louisiana, are among the world’s most productive, with landings of commercially- and recreationally-important species exceeding all other contiguous US states. Coastal wetlands are disappearing at an alarming rate because they have been impounded from Mississippi River water and sediment. Although controversial, one proposed solution is to re-route the Mississippi River through diversions and siphons to supply the freshwater and sediments necessary to rebuild vanishing wetlands, particularly in Barataria Bay and Breton Sound, LA. This strategy is one approach outlined in the Louisiana Coastal Master Plan. This project aimed to describe the composition and structure …

Same Stone, Different Outcomes: Marine Communities On Engineered Vs. Natural Rock Shores, Lucy Anne Dando Lockwood

Graduate Masters Theses

The effort to protect coastal property and infrastructure from storm damage, erosion, and sea level rise has resulted in increased construction of coastal protection structures (CPS) worldwide. Researchers around the globe have found that the marine communities living on CPS differ from those living on natural rock outcroppings in the same area. We conducted a classic disturbance experiment to investigate possible differences in marine organism response and community assembly between natural and human-constructed rocky intertidal habitat along the Massachusetts coast. The one-year study used naturally occurring rock shores and human-made granite seawalls with both wave-exposed and wave-protected areas. Significant differences …

Interspecific Differences In Stressor Tolerance Drive Community-Level Changes In A Small Aquatic Ecosystem, Jennifer M. Weathered

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The global human population is expected to reach 9.8 billion by 2050 and an increase in food yield will be needed to provide for the future generations. Insects are among the biggest threats to food production and are therefore the subject of intense chemical control through the application of pesticides. The ability of insects to evolve resistance to pesticides after repeated use has been documented. However, how evolved responses affect individuals’ behaviors, their interactions with others, and how these factors impact overall patterns in distribution remains relatively unexplored in the bromeliad.

The aquatic insect communities housed in water-holding tropical plants …

The Effects Of Hackberry Psyllids On Refueling Migratory Songbirds And Autumnal Seed Rain, Chance H. Hines

Biological Sciences Theses & Dissertations

Hackberry psyllids (Pachypsylla sp) are a galling insect native to North America’s hackberry trees (Celtis sp). Hackberry leaf-galling psyllids are ephemerally abundant during autumn, a period of time when migratory songbirds are traveling from their breeding areas in temperate North America south to their winter ranges. These migrations are energetically taxing and many songbirds fuel their journey with resources like insects and fruits. I captured birds with mist nets, observed foraging behaviors, and captured avian-dispersed fleshy fruit seeds (hereafter, seed rain) rain during the autumn of 2016 and 2017 to determine how hackberry psyllids, an ephemerally …

Context-Dependent Dynamics Lead To The Assembly Of Functionally Distinct Microbial Communities, Leonora S. Bittleston, Matti Gralka, Gabriel E. Levanthal, Itzhak Mizrahi, Otto X. Cordero

Biology Faculty Publications and Presentations

Niche construction through interspecific interactions can condition future community states on past ones. However, the extent to which such history dependency can steer communities towards functionally different states remains a subject of active debate. Using bacterial communities collected from wild pitchers of the carnivorous pitcher plant, Sarracenia purpurea, we test the effects of history on composition and function across communities assembled in synthetic pitcher plant microcosms. We find that the diversity of assembled communities is determined by the diversity of the system at early, pre-assembly stages. Species composition is also contingent on early community states, not only because of …

Stoichiometric And Stable Isotope Ratios Of Wild Lizards In An Urban Landscape Vary With Reproduction, Physiology, Space And Time, Andrew M. Durso, Geoffrey David Smith, Spencer B. Hudson, Susannah S. French

Ecology Center Publications

Spatial and temporal variation in stoichiometric and stable isotope ratios of animals contains ecological information that we are just beginning to understand. In both field and lab studies, stoichiometric or isotopic ratios are related to physiological mechanisms underlying nutrition or stress. Conservation and ecosystem ecology may be informed by isotopic data that can be rapidly and non-lethally collected from wild animals, especially where human activity leaves an isotopic signature (e.g. via introduction of chemical fertilizers, ornamental or other non-native plants or organic detritus). We examined spatial and temporal variation in stoichiometric and stable isotope ratios of the toes of Uta …

Haemoparasite Infection And Immunogenetic Diversity In A Clade Of North American Songbirds, Naima Starkloff

Legacy Theses & Dissertations (2009 - 2024)

The persistence of an organism in a particular habitat is mediated by a complex interplay of abiotic and biotic interactions. These interactions become especially complicated for a vector-transmitted parasite as its persistence relies on its ability to colonize both ectothermic and endothermic host organisms. Host factors, rather than environmental factors, have been highlighted as key predictors of the diversity and prevalence of avian haemosporidians (malaria parasites and relatives) globally. The range of a parasite is limited by its host specificity as well as the community of hosts present. In addition, as haemosporidian infections typically have negative fitness consequences on hosts, …

Impacts Of Ocean Acidification On Intertidal Macroalgae And Algivore Preference, Andrea Michelle Fieber

Cal Poly Humboldt theses and projects

Ocean acidification, a facet of global climate change, has the potential to induce changes in marine macroalgae that modify their existing interactions with algivorous invertebrates. In this study, I examined the effects of elevated carbon dioxide (pCO₂) on several species of intertidal macroalgae (Phaeophyta, Rhodophyta) and evaluated the present-day and predicted future preferences of algivores (Pugettia producta and Tegula funebralis) by assessing grazing rates on untreated algal tissue and on algae exposed to high-pCO₂ seawater. Both red and brown algae grew faster in elevated pCO₂ than in ambient seawater, …

The Effect Of Shade Tree Species On Bird Communities In Central Kenyan Coffee Farms, Deven Kammerichs-Berke

Cal Poly Humboldt theses and projects

Shade coffee has been recognized as a well-studied example of a land-sharing management strategy that both creates habitat for tropical birds while also maintaining agricultural yield. Despite the general consensus that shade coffee is more “bird-friendly” than a sun coffee monoculture, little work has been done to investigate the effects of specific shade tree species on bird diversity and their capacity to help deliver ecosystem services. Previous studies in temperate regions have demonstrated that due to shared evolutionary histories, native plant species are better at promoting native arthropod numbers, which in turn support a greater number of birds. This study …

Past Management Spurs Differential Plant Communities Within A Giant Single-Clone Aspen Forest, Paul C. Rogers, Jan ŠEbesta

Ecology Center Publications

Sustainable aspen ecosystems hold great promise for global biodiversity conservation. These forests harbor relatively high species diversity, yet are threatened by fire suppression, land development, timber-focused management, extended droughts, and chronic herbivory. “Pando” is a high-profile quaking aspen (Populus tremuloides) forest in Utah, USA which is putatively the ‘largest living organism on earth.’ Pando comprises an estimated 47,000 genetically identical stems, but is threatened by human impacts. Our interest in the present study is whether changes to the giant organism were affecting understorey vegetation and whether discrete zones are displaying divergent community compositions. For instance, recent research has demonstrated strong …

Reconstructing Energy Flow Through Modern And Historical Marine Communities: Insights From Amino Acid Isotope Analysis, Emma A. Elliott Smith

Biology ETDs

The fundamental currency of life is energy. Organisms need energy to grow, to survive and to reproduce. Understanding the acquisition of energy by consumers is thus a foundational aspect of biological research. This is especially important in the modern era, as impacts of ongoing anthropogenic effects will be mediated or amplified through food webs. Here, I explore how isotopic analysis of individual amino acids – a technique new to ecological studies – can be used to trace energy flow through animal communities in modern and ancient time periods. In particular, I focus on kelp forest food webs, which are nearshore …

Ecological Consequences Of Sea Star Wasting Disease: Non-Consumptive Effects And Trait-Mediated Indirect Interactions From Pisaster Ochraceus, Timothy Ian Mcclure

Cal Poly Humboldt theses and projects

Consumptive effects (CEs) of predators are an important factor in structuring biological communities, but further work is needed to understand how the interaction between spatial and temporal differences in predator density affects non-consumptive effects (NCEs) on prey. NCEs can cause indirect effects on food resources, known as trait-mediated indirect interactions (TMIIs), and thus can also affect community structure. However, few studies have considered the relationships between spatial and temporal predator density variation and the strength of NCEs and TMIIs in the natural environment. The ochre star Pisaster ochraceus is common predator of the herbivorous black turban snail Tegula funebralis, imposing …

Quantifying Climate Sensitivity And Climate-Driven Change In North American Amphibian Communities, David A. W. Miller, Evan H Campbell Grant, Erin Muths, Staci M. Amburgey, Michael J. Adams, Maxwell B. Joseph, J. Hardin Waddle, Pieter T. J. Johnson, Maureen E. Ryan, Benedikt R. Schmidt, Daniel L. Calhoun, Courtney L. Davis, Robert N. Fisher, David M. Green, Blake R. Hossack, Tracy A. G. Rittenhouse, Susan C. Walls, Larissa L. Bailey, Sam S. Cruickshank, Gary M. Fellers, Thomas A. Gorman, Carola A. Haas, Ward Hughson, David S. Pilliod, Steve J. Price, Andrew M. Ray, Walt Sadinski, Daniel Saenz, William J. Barichivich, Adrianne Brand

Forestry and Natural Resources Faculty Publications

Changing climate will impact species’ ranges only when environmental variability directly impacts the demography of local populations. However, measurement of demographic responses to climate change has largely been limited to single species and locations. Here we show that amphibian communities are responsive to climatic variability, using > 500,000 time-series observations for 81 species across 86 North American study areas. The effect of climate on local colonization and persistence probabilities varies among eco-regions and depends on local climate, species life-histories, and taxonomic classification. We found that local species richness is most sensitive to changes in water availability during breeding and changes in …

Delineating Metrics Of Diversity For A Snake Community In A Rare Ecosystem, Zachary John Marcou

Electronic Theses and Dissertations

Snakes are among the least understood vertebrate groups despite their considerable diversity. A diverse community of snakes in an ecosystem can indicate a complex habitat structure that is capable of supporting a robust assemblage of other biota. I used remote photography arrays (RPA) to quantify metrics of diversity for the snake community occurring in a ~7,000–ha tract of contiguous Longleaf Pine (Pinus palustris) Savanna within the Angelina National Forest (ANF; Angelina and Jasper Cos., TX), over the course of two consecutive snake activity seasons. I quantified the snake species richness, Shannon diversity, and Shannon equitability for the snake community in …

Soil Homogenization: Plant Species Diversity, Ecosystem Properties And Soil Freezing Effects During Tallgrass Prairie Restoration, Holly J. Stover

Electronic Thesis and Dissertation Repository

Tillage can increase soil uniformity in former agricultural sites. Within plant communities, niche-based species sorting may occur among distinct soil patches (microsites), increasing diversity, and the interfaces between microsites (microedges) also may provide unique microsites. However, the influence of soil homogenization and microedges on ecosystem processes and plant responses to stress have not been examined. My thesis assessed if adding microsites containing sand, woodchips, pits or mounds increased plant species diversity, productivity, decomposition and nitrogen retention (¹⁵N tracer) and buffered plant responses to soil freezing in a tallgrass prairie restoration on former cropland. Homogenization decreased diversity in flat …

The Effects Of Tree Plantations And Land Use On Natural Regeneration Of Woody Plants In The Tropics: Diversity, Species Composition, Successional Dynamics, And Functional Traits, John Benjamin Longworth

LSU Doctoral Dissertations

As anthropogenic forests become more common in the tropics, there is a greater need to understand the factors that impact forest succession. I used censuses of woody plants in successional forests to study the effects of prior land use and tree plantations on species composition and richness. First, I tested the hypothesis that communities originating from different land uses were converging in species composition over time. I compared species composition using the Chao-Jaccard similarity index. I observed shifts in the dominant species during the first 30 years of succession, but not convergence of species composition in sites with different land-use …