Life Sciences Commons^™

Impacts Of Environmental Stressors On Native South Dakota Amphibian Physiology And Survival, Danielle Jean Galvin

Dissertations and Theses

Amphibian populations around the world are declining, with some of the most likely drivers behind these declines including emerging infectious diseases and environmental contaminants. To address major gaps in the current literature, I sought to evaluate the effect of two major environmental stressors on various aspects of amphibian physiology: emerging infectious diseases and environmental contaminants. Emerging infectious diseases of amphibians include fungal, viral, and parasitic pathogens which have expanded in host range, either geographically or in competent host species. Environmental contaminants include chemicals which may be naturally occurring in the environment, or which may be introduced to the environment, often …

Monitoring Movement And Range Expansion Of Silver And Bighead Carp (Hypophthalmichthys Molitrix, H. Nobilis) In South Dakota Tributaries Of The Missouri River, Lindsey Ann Pearl Labrie

Dissertations and Theses

Invasive species, climate change, human impacts on the landscape, flooding, and drought are all dynamic factors that greatly impact the Missouri River and its tributaries in eastern South Dakota. Invasive Carp, and more specifically, Bighead (Hypophthalmichthys nobilis) and Silver Carp (H. molitrix), first invaded the Missouri River watershed in eastern South Dakota in the late 1990s and have since spread throughout the basin downstream of Gavin’s Point Dam. The first chapter of this study uses environmental DNA (eDNA) in the context of two major barriers to fish movement in the Vermillion and Big Sioux Rivers to determine potential presence and …

Application Of Hierarchical Species Distribution Models To Avian Species Of South Dakota And The Upper Missouri River Basin, Reza Goljani Amirkhiz

Dissertations and Theses

Recognizing the distributional patterns of species can inform management actions and increase scientific knowledge about species. Habitat Suitability Models (HSMs) are valuable tools in modeling species’ niches and effects of climate change and anthropogenic and natural disturbances on species’ distributions and abundances. In this dissertation, I expanded the application of hierarchical HSMs for a rare bird (Virginia’s warbler) and an economically valuable bird (ring-necked pheasant) in South Dakota. Also, we developed multiscale HSMs for grassland birds in the Upper Missouri River Basin (UMRB) to quantify current habitat associations and predict the influences of climate and landcover change associated with the …

Documenting Range Expansion Of Two Invasive Tick (Acari:Ixodidae) Species In Eastern South Dakota, Braden Wojahn

Dissertations and Theses

This project documents the expanded zoogeographic ranges of the blacklegged tick (Ixodes scapularis) and lone star tick (Amblyomma americanum) within eastern South Dakota. Ticks are important when considering a “One Health” approach, as many species are competent vectors of zoonotic pathogens causing human diseases and conditions such as Lyme disease, tularemia, rickettsia, and alpha gal syndrome. The research involved constitutes two steps. First, tick surveillance was conducted in eastern counties of South Dakota, spanning March 2021 through August 2022. Surveillance took place along edge habitat at recreation areas, state and public parks, wildlife management areas and refuges, and other natural …

Fine Characterization Of Leafing Phenology In The Brazilian Atlantic Forest By Optical And Microwave Remote Sensing, James B. Bell

Dissertations and Theses

Tropical forests provide important ecosystem functions in the global biosphere, but they remain among the most poorly understood elements of land surface models, especially with regard to their seasonal dynamics. For instance, in seasonally dry forests, the pattern of the annual green-up in their canopies closely follows annual patterns of rainfall. The same, however, does not occur in wet forest canopies which are dominated by evergreen trees. In the latter, water is not scarce enough to limit leaf photosynthetic function. Canopy leafing phenology in these forests is therefore poorly characterized by optical remote sensing methods which are not sensitive to …

Urban Nesting Biology, Population Viability And Ecology Of The Willow Flycatcher, Empidonax Traillii, Stephanie Alexandra Byrne Doorly

Dissertations and Theses

Reproductive success, in any species, relies both on the habitat utilized to reproduce and on the successful reproductive output of individual animals within a population. Populations in turn rely on the reproductive fitness of the individual. Whether populations remain stable, grow, or decline ultimately relies on the combined reproductive output of the individuals within that population.

We studied the Willow Flycatcher (Empidonax traillii; henceforth WIFL), a well-studied Neartic-Neotropical migrant passerine whose breeding range extends from the east to west coast of North America. Across much of their range, and in particular in the western regions, breeding population are …

Climate And Intraspecific Geographic Variation Of Nests And Eggs In The Eastern Kingbird Tyrannus Tyrannus, Samantha Marie Gillette

Dissertations and Theses

The reproductive success of birds is ultimately driven by the traits of nests, eggs, and incubation behavior and the interactions among them. Avian reproduction varies on large geographic scales, most prominently between tropic- vs. temperate-breeding species, but also on finer scales, such as along latitudinal and elevational geographic gradients. However, despite the importance of eggs and nests, how their traits vary geographically in response to differences in regional climate remains understudied.

We studied Eastern Kingbirds (Tyrannus tyrannus), which have been previously demonstrated to alter incubation length in response to local climate conditions. Our study sites, Kansas (KS), New …

Effects Of Green Crab (Carcinus Maenas) Across Variable Densities Of Eelgrass (Zostera Marina), Kimberly Alexis Brown

Dissertations and Theses

Eelgrass (Zostera marina) plays a critical role in estuarine ecosystem function by sustaining a variety of marine and freshwater species, but it's increasingly threatened by the aggressive non-native green crab (Carcinus maenas). The abundance of C. maenas is on the rise within the coastal environment of Oregon and it is imperative to know how these populations will affect the long-term health of Z. marina. C. maenas have been linked to declines in Z. marina coverage and shellfish abundance, but there has been no research on to what extent the density of Z. marina affects its …

Digging For Information: Investigating The Efficacy Of Tracking And Augmenting Lacunicambarus Nebrascensis For Endangered Dragonfly Conservation, Danielle Elaine Tesar

Dissertations and Theses

Restoration and preservation of habitat for threatened and endangered species can proceed in many ways. Augmentation strategies can be used to supplement threatened and endangered populations or the species and resources on which those imperiled species depend. Comprehensive knowledge of species movement and home range is necessary to formulate effective augmentation plans. For freshwater burrowing crayfish, this type of information is generally lacking. The studies reported here were designed to acquire detailed information that is essential for augmentation of the plains devil crayfish, Lacunicambarus nebrascensis (formerly, Cambarus diogenes). Although L. nebrascensis populations are not considered threatened, this crayfish provides vital …

Population Structure Of The Lizard Ecpleopus Gaudichaudii Coincides With A Biogeographic Barrier - The Doce River, Alexander J. Garretson

Dissertations and Theses

Intraspecific genetic variation is an integral component of diversification and the accumulation of biodiversity. The degree to which isolated populations of the same species are genetically structured in geographical space is impacted by a variety of mechanisms. In this study, I document patterns and discuss possible drivers of genetic structure within Ecpleopus gaudichaudii, a lizard species endemic to the Atlantic Forest of Brazil. For that, I assembled ddRadseq sequences from 48 individuals across much of the range of the E. gaudichaudii and analyzed its population structure. I created an intraspecific phylogeny for this group utilizing RAxML and conducted a …

Ecological Changes Of The Lower Niobrara River Valley And Lewis And Clark Lake Delta From Past To Present, Madalyn Christine Bollig

Dissertations and Theses

Over half of the world’s large river systems are impacted by dams. These may prevent sediment flow downstream, resulting in accumulation in the upstream reservoir. On the Missouri River, deltas and associated backwater-affected areas occur in nine locations across six reservoirs. One of these, the Lewis and Clark Lake delta-backwater, is influenced by sediment inputs from both the Missouri River and the Niobrara River. While the extension of the prograding delta into the reservoir has been well documented, there has been little research on upstream (backwater) effects of the delta on the lower Niobrara River. This study examined ecological changes …

Post-Fire Tree Mortality And Regeneration Patterns As Proxies Of Conifer Forest Resilience, Sebastian Upton Busby

Dissertations and Theses

Shifting wildfire patterns and climate conditions, magnified by anthropogenic climate change, are threatening the resilience of conifer forests in North America and more specifically, the western US. If native conifer species are functionally maladapted to novel fire patterns and post-fire climate conditions, large-scale shifts in conifer forest structure, composition, and extent may occur as warming intensifies. Forest resilience in the context of fire and climate can be understood and quantified by the survival of trees through fire events and success of trees to regenerate post-fire and maintain population levels. In this dissertation, I use field observations and remote sensing to …

Impacts Of Environmental And Anthropogenic Stressors On Amphibian Welfare, Diversity, And Distribution In The Upper Missouri River Basin, Kaitlyn Campbell

Dissertations and Theses

Climate change and anthropogenic stressors have contributed to rapid declines among various taxonomic groups; however, amphibian declines have been particularly intense and primarily stemmed from warming temperatures, habitat loss, exposure to contaminants, disease, and their subsequent interactions. Several climate mitigation strategies, like Bioenergy with Carbon Capture and Storage, have been proposed to alleviate the impact of rising temperatures; however, these proposals often fail to recognize and quantify the true impact on fauna, including changes in species distributions. To address this critical gap in knowledge, this research identified current amphibian distributions in the Upper Missouri River Basin and projected distribution changes …

Mitonuclear Mismatch Is Associated With Increased Male Frequency, Outcrossing, And Male Sperm Size In Experimentally-Evolved C. Elegans, Brent William Bever

Dissertations and Theses

We provide the first controlled study of how male frequencies and rates of outcrossing evolve in response to mitonuclear mismatch by allowing replicate lineages of C. elegans nematodes containing either mitochondrial or nuclear mutations of electron transport chain (ETC) genes to evolve under three sexual systems: facultatively outcrossing (wildtype), obligately selfing, and obligately outcrossing. In partial support of a tenet of the mitonuclear sex hypothesis, which predicts that outcrossing will be favored in cases of mitonuclear mismatch, we found evolution of increased male frequency in at least one replicate line of all four ETC mutant backgrounds tested--nuclear isp-1, mitochondrial …

Microbes On The Mountain: Plant-Microbe Associations And Interactions On Mount St. Helens, Emily Rose Wolfe

Dissertations and Theses

Plant-microbe associations and interactions provide critical context to studies in both community and ecosystem ecology, especially in systems that are relatively new and still undergoing early successional processes. Microbes can colonize the surfaces and interiors of all plant tissues, and these assemblages vary in composition both spatially and temporally, even within the same plant. Endophytes are bacteria or fungi that spend most of their lifecycles living within plant tissues asymptomatically--typically, "endophyte" refers specifically to aboveground tissues such as leaves and stems, and therefore may have direct influences on defenses against herbivory, pathogen or pest tolerance, and even afterlife effects on …

Exploring Linkages Between Landscape Patterns And Freshwater And Estuarine Bivalves In The Coast Range Of Oregon, Kaegan Michael Scully-Engelmeyer

Dissertations and Theses

Spatial configurations of landscape variables (biotic, abiotic, and socio-ecological) affect and are affected by ecological processes and species in watersheds. This dissertation explores relationships among landscape patterns, ecosystem processes and bivalve species dynamics in coastal watersheds in Oregon, USA. I approached this broad topic through two primary avenues of research: investigating cross-ecosystem threats from pesticide use in forestland management to downstream aquatic environments, and the landscape ecology of an at-risk freshwater mussel species.

Terrestrial land use activities present cross-ecosystem threats to riverine and marine species and processes. Specifically, pesticide runoff can disrupt hormonal, reproductive, and developmental processes in aquatic organisms, …

Spatial And Non-Spatial Patterns Of Genetic Diversity In Neotropical Bats, Andrea J. Calderon Brito

Dissertations and Theses

Macroecological studies that predict genetic diversity and its correlation with other biodiversity dimensions are essential to conservation in a rapidly changing environment. However, in bats (order Chiroptera), studies associating abiotic or ecological traits that could help to predict genetic diversity are scarce, even for singular species. In the Neotropics, the highest concentration of mammal and amphibian genetic diversity has been found in the Andes mountains and the Amazon Rainforest, yet it is an open question whether bat genetic diversity is also higher in these regions, or even if any abiotic factors are correlated with bat genetic diversity. Additionally, it is …

A Historical Ecology Of Aridland Springs In Desert National Wildlife Refuge, Nuwu/Nuwuvi (Southern Paiute/Chemehuevi) Ancestral Territory, Nevada, Yarrow Sarah Valentine Geggus

Dissertations and Theses

Aridland springs are among the most threatened ecosystems in the world. Vital to desert ecologies and Indigenous cultures, these complex and individualistic ecosystems have layered histories. To inform management in the changing landscape of Desert National Wildlife Refuge, a 1.6 million acre protected area in Southern Nevada, I conducted a historical ecology study of a sample of ten upland springs. Through a six-part interdisciplinary methodology including interviews, archaeological survey, botanical survey, and archival research, I summarize findings into three broad eras: the Nuwu/Nuwuvi pre-Contact Era, the Settler Era, and the U.S. Fish and Wildlife Service Era.

For millennia, Nuwu/Nuwuvi drank …

Impacts Of Vegetation Density And Distance From The High Tide Line On Raccoon Predation Of Diamondback Terrapin Nests In Jamaica Bay, Ny – A Preliminary Study, Zvi Teitelbaum

Dissertations and Theses

Diamondback terrapin turtles (Malaclemys terrapin) have been culturally and economically important since at least the nineteenth century. However, due to overharvesting, this became a species of conservation concern. While extensive data are available to describe its natural history, some conditions that impact nest predation are poorly understood. In this exploratory study, vegetation type and distance to the high tide line were examined to determine their potential impact on predation of diamondback terrapin nests by raccoons. For that, terrapin scented water was used to construct 50 artificial nests at Jamaica Bay Wildlife Refuge. These artificial nests were placed in …

More Than Meets The Eye: A Taxonomic Revision Of The Nearctic Species In The Eye-Gnat Genus Amiota Loew (Diptera: Drosophilidae), Lance E. Jones

Dissertations and Theses

Thorough biotic inventories are still needed even in families as seemingly well-studied as fruit flies (Diptera: Drosophilidae). Drosophilidae have had an outsize effect on the history of biology because of their pivotal role in the study of genetics, development, and evolution. Even with more than a century of intensive study, large gaps remain in our understanding of diversity in this fly family, including well-studied areas such as North America. This thesis presents a taxonomic revision of the Nearctic species of the genus Amiota Loew. Twenty-three species are identified as being new to science for publication at a later date. This …

The Fate Of Atmospherically Deposited Mercury In Mountain Lake Food Webs, And Implications For Fisheries Management, Ariana Martos Chiapella

Dissertations and Theses

Mountain lakes are an iconic feature of the landscape in the Mountain West. They hold significant ecological and cultural value, and are important sentinels of environmental change. Despite their pristine image, these remote waterbodies are subjected to numerous anthropogenic stressors. Mountain lakes are naturally fishless systems, but historical fish stocking has led to major changes in mountain lake food web structure, including declines of resident amphibians, large-bodied zooplankton, and emergent insect populations. Atmospherically deposited contaminants, such as mercury, can accumulate in mountain lake food webs, leading to relatively high levels in the fish relative to the water. Managing for these …

Multi-Locus Phylogenetic Inference Of The Howler Monkey (Alouatta) Radiation In South America., Esmeralda Ferreira

Dissertations and Theses

Abstract

Howler monkeys (Alouatta) are the most widely distributed New World primates, ranging from southern Mexico to northern Argentina. They occur in tropical rain forests, flooded and gallery forests, and deciduous and semi-deciduous environments. Despite their importance as seed dispersers, howlers have also been known to be ecological indicators. Available phylogenetic hypotheses for this genus have used chromosomal characters, morphological characteristics, and a limited number of molecular markers and specimens. In spite of these analyses, branching patterns among howler species lineages conflict between studies or remain unresolved. Using 14 unlinked non-coding intergenic nuclear regions under both a concatenated …

Do Saproxylic Curculionids Affect The Fitness Of Co-Occurring Cerambycids?, Sheila R. Heath

Dissertations and Theses

Saproxylic insects sometimes coexist in incredibly high numbers under bark and share common resources. Thus, interactions between species are possible and could even explain their coexistence. This study investigates evidence of negative or positive effects of curculionid beetles (Coleoptera: Curculionidae) on cerambycid beetles (Coleoptera: Cerambycidae) that coexisted in dead tree branches in Costa Rica. Co-occurrence analysis and generalized regressions were used to test associations between cerambycid and curculionid species. Three cerambycid species that each co-occurred with a curculionid species were selected to measure fitness. Fitness measures of the cerambycid were compared with abundance of the co-occurring curculionid to assess the …

Accumulation And Transmission Dynamics Of A Naturally-Occurring Mtdna Deletion In Caenorhabditis Briggsae, Jennifer Anne Sullins

Dissertations and Theses

Maintaining mitochondrial genome sequence integrity is essential for preserving normal mitochondrial function. Several human diseases have been associated with heteroplasmic mitochondrial genome mutations, but few genetic systems can simultaneously represent pathogenic mitochondrial genome evolution and inheritance. The nematode Caenorhabditis briggsae is one such model. Natural C. briggsae isolates are globally-distributed and phylogenetically grouped into three distinct clades, with isolates exhibiting varying levels of a large-scale mtDNA deletion, nad5∆. Furthermore, a small subset of clade II isolates exhibits putative compensatory mutations that may reduce the risk of deletion formation and accumulation in those populations. In this thesis, the author characterizes the …

Ecology And Population Dynamics Of Salmonids In The Columbia River: Response Of Fishes To Anthropogenic Change In A Large Riverscape, Timothy Sean Elder

Dissertations and Theses

Freshwater ecosystems and the species that reside therein are disproportionately imperiled compared to terrestrial systems. Over the past 150 years, the Columbia River basin in the western United States has gone from one of the most productive and abundant salmon watersheds in the world, to having just a small fraction of its former salmon abundance. The cause of declines in salmon productivity and abundance are related to overlapping and confounding stressors including changes in large-scale climatic patterns and anthropogenic alterations within and adjacent to the Columbia River. Four main anthropogenic stressors have been identified as the leading causes of salmonid …

Recovery Of Zooplankton Communities To Whole-Lake Disturbance, Brian Newton Mcgann

Dissertations and Theses

Community assembly following disturbance is a key process in determining the composition and function of the future community. However, replicated studies of community assembly at whole ecosystem scales are rare. Here is described a series of whole-lake experiments in which the recovery of zooplankton communities is tracked following an ecosystem-scale disturbance. Fourteen lakes in eastern Washington were chosen: seven lakes were treated with rotenone, while the remaining seven were reference. Each lake was monitored up to six months before and one to two years after the rotenone treatments. Zooplankton tows were taken monthly, at a shallow, intermediate, and deep site …

Evolution Of Floral Morphology And Symmetry In The Miconieae (Melastomataceae), Maria Gavrutenko

Dissertations and Theses

Analyses of evolution of floral morphology and symmetry broaden our understanding of the drivers of angiosperm diversification. Integrated within a flower, labile floral characters produce different phenotypes that promote variable interactions with pollinators. Thus, investigation of floral evolution may help infer potential historic transitions in pollinator modes and ecological pressures that generated present diversity. This study aims to explore morphological evolution of flowers in Miconieae, a species-rich Neotropical tribe within family Melastomataceae. Despite a constrained floral plan, Melastomataceae manage to achieve a variety of floral traits appealing to diverse pollinator types, with majority of the species requiring specialized “buzz pollination” …

The Geographic Mosaic Of Wolbachia Infection In Melanitis Leda Butterfly Populations, Brandon E. Latorre

Dissertations and Theses

Insects are the most species-rich multicellular taxon on the planet, and it is estimated that more than half of all insect species are infected with the endosymbiont Wolbachia. This bacterium can manipulate the reproduction of its host and potentially affect host evolution. Most surveys investigating patterns of Wolbachia infection in nature sample limited numbers of individuals; population-level investigations into geographic differences in infection status that might affect host evolution are few. To investigate geographic variability among populations of a single species, we assayed 133 Melanitis leda butterflies (Lepidoptera: Nymphalidae: Satyrinae) for Wolbachia infection collected throughout its range in the …

Responses Of Aquatic Non-Native Species To Novel Predator Cues And Increased Mortality, Brian Christopher Turner

Dissertations and Theses

Lethal biotic interactions strongly influence the potential for aquatic non-native species to establish and endure in habitats to which they are introduced. Predators in the recipient area, including native and previously established non-native predators, can prevent establishment, limit habitat use, and reduce abundance of non-native species. Management efforts by humans using methods designed to cause mass mortality (e.g., trapping, biocide applications) can reduce or eradicate non-native populations. However, the impacts of predator and human induced mortality may be mitigated by the behavior or population-level responses of a given non-native species.

My dissertation examined the responses of non-native aquatic species to …

A Phylogenetic And Environmental Analysis Of Brazilian Placosoma Lizards, Kai A. Farje-Van Vlack

Dissertations and Theses

Placosoma is a genus comprised of the Brazilian spectacled lizards P. champsonotus, P. cipoense, P. cordylinum, P. glabellum, and P. limaverdorum. While P. champsonotus, P. cordylinum, and P. glabellum occupy the southern coast of Brazil, P. cipoense is found in the montane grasslands north of that range, and P. limaverdorum was recently discovered in forest isolates that persist within the semi-arid Caatinga. This study elucidates the ecological and evolutionary relationships among these morphologically similar lizards. Using mitochondrial and nuclear gene sequences, genus-wide phylogenies were inferred through Bayesian inference and a species tree approach, …