Life Sciences Commons^™

Spotted Cotton Oligonucleotide Microarrays For Gene Expression Analysis, Joshua A. Udall, Lex E. Flagel, Foo Cheung, Andrew W. Woodard, Ran Hovav, Ryan Adam Rapp, Jordan M. Swanson, Jinsuk J. Lee, Alan R. Gingle, Dan Nettleton, Christopher D. Town, Z. Jeffrey Chen, Jonathan F. Wendel

Dan Nettleton

Microarrays offer a powerful tool for diverse applications plant biology and crop improvement. Recently, two comprehensive assemblies of cotton ESTs were constructed based on three Gossypium species. Using these assemblies as templates, we describe the design and creation and of a publicly available oligonucleotide array for cotton, useful for all four of the cultivated species. Synthetic oligonucleotide probes were generated from exemplar sequences of a global assembly of 211,397 cotton ESTs derived from >50 different cDNA libraries representing many different tissue types and tissue treatments. A total of 22,787 oligonucleotide probes are included on the arrays, optimized to target the …

Duplicate Gene Expression In Allopolyploid Gossypium Reveals Two Temporally Distinct Phases Of Expression Evolution, Lex E. Flagel, Joshua A. Udall, Dan Nettleton, Jonathan F. Wendel

Dan Nettleton

Polyploidy has played a prominent role in shaping the genomic architecture of the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species contain two divergent, although largely redundant genomes. Owing to this redundancy, these genomes can play host to an array of evolutionary processes that act on duplicate genes. We compared homoeolog (genes duplicated by polyploidy) contributions to the transcriptome of a natural allopolyploid and a synthetic interspecific F1 hybrid, both derived from a merger between diploid species from the Gossypium A-genome and D-genome groups. Relative levels of A- and D-genome contributions to the petal transcriptome were determined for 1,383 gene …

Belowground Bud Bank Of Bromus Inermis In Response To Mowing Frequency Over Two Growing Seasons, Denise Olson, Lan Xu, Arvid Boe, N. H. Troelstrup Jr.

Arvid Boe

Smooth bromegrass (Bromus inermis) is a Eurasian C3 perennial grass. It was introduced to North America in 1884 to control soil erosion and for pasture improvement, but has been outcompeting the native grasses of the northern Great Plains, decreasing diversity and altering habitats. Control of smooth bromegrass is a key to improve degraded native dominated grasslands. However, current practices have minimal or only short term effects due to extensive rhizome and tiller production by bromegrass. Even though vegetative reproduction via the belowground bud bank is the primary means for its invasiveness and persistence, the effect of management on its bud …

Sustainable Agriculture Lesson For Middle School Classrooms, Sara Colombe, Madhav P. Nepal, Jennifer Mclaughlin, Matthew L. Miller, Larry B. Browning, P. Troy White

Madhav Nepal

In this lesson, students will learn about sustainability, where farmers/agriculturists can meet the needs of food, fiber, and fuel for the growing population. Students learn about growing population, its growth rate, major food source, sustainability barrel, potential ripple effects of positive impacts as well as the food waste and its effects.

The Evolution Of Irrationality, Owen D. Jones

Owen Jones

The place of the rational actor model in the analysis of individual and social behavior relevant to law remains unresolved. In recent years, scholars have sought frameworks to explain: a) disjunctions between seemingly rational behavior and seemingly irrational behavior; b) the origins of and influences on law-relevant preferences, and c) the nonrandom development of norms. This Article explains two components of an evolutionary framework that, building from accessible insights of behavioral biology, can encompass all three. The components are: "time-shifted rationality" and "the law of law's leverage."

Law, Evolution, And The Brain: Applications And Open Questions, Owen D. Jones

Owen Jones

This essay discusses several issues at the intersection of law and brain science. If focuses principally on ways in which an improved understanding of how evolutionary processes affect brain function and human behavior may improve law's ability to regulate behavior. It explores sample uses of such "evolutionary analysis in law" and also raises questions about how that analysis might be improved in the future. Among the discussed uses are: 1) clarifying cost-benefit analyses; 2) providing theoretical foundation and potential predictive power; 3) assessing comparative effectiveness of legal strategies; and 4) revealing deep patterns in legal architecture. Throughout, the essay emphasizes …

Endowment Effects In Chimpanzees, Owen D. Jones, Sarah F. Brosnan, Susan P. Lambeth, Mary Catherine Mareno, Amanda S. Richardson, Steven Schapiro

Owen Jones

Human behavior is not always consistent with standard rational choice predictions. The much-investigated variety of apparent deviations from rational choice predictions provides a promising arena for the merger of economics and biology. Although little is known about the extent to which other species also exhibit these seemingly irrational patterns of human decision-making and choice behavior, similarities across species would suggest a common evolutionary root to the phenomena.

The present study investigated whether chimpanzees exhibit an endowment effect, a seemingly paradoxical behavior in which humans tend to value a good they have just come to possess more than they would have …

Evolution And The Expression Of Biases: Situational Value Changes The Endowment Effect In Chimpanzees, Owen D. Jones, Sarah F. Brosnan, Molly Gardner, Susan P. Lambeth, Steven J. Schapiro

Owen Jones

Cognitive and behavioral biases, which are widespread among humans, have recently been demonstrated in other primates, suggesting a common origin. Here we examine whether the expression of one shared bias, the endowment effect, varies as a function of context. We tested whether objects lacking inherent value elicited a stronger endowment effect (or preference for keeping the object) in a context in which the objects had immediate instrumental value for obtaining valuable resources (food). Chimpanzee subjects had opportunities to trade tools when food was not present, visible but unobtainable, and obtainable using the tools. We found that the endowment effect for …

Proprioception, Non-Law, And Biolegal History, Owen D. Jones

Owen Jones

This Article explores several advantages of incorporating into law various insights from behavioral biology about how and why the brain works as it does. In particular, the Article explores the ways in which those insights can help illuminate the deep structure of human legal systems. That effort is termed "biolegal history."

Law, Biology, And Property: A New Theory Of The Endowment Effect, Owen D. Jones, Sarah F. Brosnan

Owen Jones

Recent work at the intersection of law and behavioral biology has suggested numerous contexts in which legal thinking could benefit by integrating knowledge from behavioral biology. In one of those contexts, behavioral biology may help to provide theoretical foundation for, and potentially increased predictive power concerning, various psychological traits relevant to law. This Article describes an experiment that explores that context.

The paradoxical psychological bias known as the endowment effect puzzles economists, skews market behavior, impedes efficient exchange of goods and rights, and thereby poses important problems for law. Although the effect is known to vary widely, there are at …

Intuitions Of Punishment, Owen D. Jones, Robert Kurzban

Owen Jones

Recent work reveals, contrary to wide-spread assumptions, remarkably high levels of agreement about how to rank order, by blameworthiness, wrongs that involve physical harms, takings of property, or deception in exchanges. In The Origins of Shared Intuitions of Justice (http://ssrn.com/abstract=952726) we proposed a new explanation for these unexpectedly high levels of agreement.

Elsewhere in this issue, Professors Braman, Kahan, and Hoffman offer a critique of our views, to which we reply here. Our reply clarifies a number of important issues, such as the interconnected roles that culture, variation, and evolutionary processes play in generating intuitions of punishment.

Low Reproductive Success Of Black Skimmers Associated With Low Food Availability, Christopher A. Gordon, Daniel A. Cristol, Ruth A. Beck

Daniel Cristol

No abstract provided.

Interactions Between Chemical And Climate Stressors: A Role For Mechanistic Toxicology In Assessing Climate Change Risks, M J. Hooper, G Ankley, Daniel A. Cristol, L Maryoung, P Noyes, K Pinkerton

Daniel Cristol

No abstract provided.

High Levels Of Maternally Transferred Mercury Do Not Affect Reproductive Output Or Embryonic Survival Of Northern Watersnakes (Nerodia Sipedon), S Y. Chinn, J D. Willson, Daniel A. Cristol, D V.V. Drewett, W A. Hopkins

Daniel Cristol

No abstract provided.

A Communal Catalogue Reveals Earth’S Multiscale Microbial Diversity, L R. Thompson, Daniel A. Cristol

Daniel Cristol

No abstract provided.

Avian Prey-Dropping Behavior Ii: American Crows And Walnuts, P V. Switzer, Daniel A. Cristol

Daniel Cristol

No abstract provided.

Avian Prey-Dropping Behavior I: Effects Of Prey Characteristics And Prey Loss, P V. Switzer, Daniel A. Cristol

Daniel Cristol

No abstract provided.

Effects Of Mercury And Sex On Plumage In Belted Kingfishers, Ariel E. White, Daniel A. Cristol

Daniel Cristol

No abstract provided.

Modeling The Effects Of Crab Potting And Road Traffic On A Population Of Diamondback Terrapins, Sarah Gilligand, Randolph Chambers

Randolph Chambers

No abstract provided.

Efficiency Of The Male Effect With Photostimulated Bucks Does Not Depend On Their Familiarity With Goats, A. L. Muñoz, M. Bedos, R. M. Aroña, J. A. Flores, H. Hernández, C. Moussu, Elodie F. Briefer, P. Chemineau, M. Keller, J. A. Delgadillo

Elodie Briefer, PhD

In ewes, the ovulatory response of females exposed to familiar rams is lower than the response of those exposed to novel ones. In goats, males rendered sexually active by exposure to long days are more efficient to induce ovulation in seasonal anestrous females than untreated males. Two experiments were conducted to determine 1) whether male goats remain familiar to females after 45 days of separation; and 2) whether photostimulated males are able to stimulate the sexual activity of females, independently of their familiarity with them. In Experiment 1, three groups of goats (n = 10 goats per group) were put …

The Dry Season Shuffle: Gorges Provide Refugia For Animal Communities In Tropical Savannah Ecosystems, J. Sean Doody, Simon Clulow, Geoff Kay, Domenic D'Amore, David Rhind, Steve Wilson, Ryan Ellis, Christina Castellano, Colin Mchenry, Michelle Quayle, Kim Hands, Graeme Sawyer, Michael Bass

J. Sean Doody

In the wet-dry tropics, animal species face the major challenges of acquiring food, water or shelter during an extended dry season. Although large and conspicuous animals such as ungulates and waterfowl migrate to wetter areas during this time, little is known of how smaller and more cryptic animal species with less mobility meet these challenges. We fenced off the entire entrance of a gorge in the Australian tropical savanna, offering the unique opportunity to determine the composition and seasonal movement patterns of the small vertebrate community. The 1.7 km-long fence was converted to a trapline that was deployed for 18-21 …

Claw Morphometrics In Monitor Lizards: Variable Substrate And Habitat Use Correlate To Shape Diversity Within A Predator Guild, Domenic D'Amore, Simon Clulow, J. Sean Doody, David Rhind, Colin R. Mchenry

J. Sean Doody

Numerous studies investigate morphology in the context of habitat, and lizards have received particular attention. Substrate usage is often reflected in the morphology of characters associated with locomotion, and, as a result, claws have become well‐studied ecomorphological traits linking the two. The Kimberley predator guild of Western Australia consists of 10 sympatric varanid species. The purpose of this study was to quantify claw size and shape in the guild using geometric morphometrics, and determine whether these features correlated with substrate use and habitat. Each species was assigned a Habitat/substrate group based on the substrate their claws interact with in their …

Modeling Spatial And Temporal Variation In Natural Background Specific Conductivity, John Olson, Susan M. Cormier

John Olson

Inferring Processes Of Coevolutionary Diversification In A Community Of Panamanian Strangler Figs And Associated Pollinating Wasps, Jordan D. Satler, Edward Allen Herre, K. Charlotte Jandér, Deren A. R. Eaton, Carlos A. Machado, Tracy A. Heath, John D. Nason

Tracy Heath

The fig and pollinator wasp obligate mutualism is diverse (~750 described species), ecologically important, and ancient (~80-90 Ma), providing model systems for generating and testing many questions in evolution and ecology. Once thought to be a prime example of strict one-to-one cospeciation, current thinking suggests that genera of pollinator wasps coevolve with corresponding subsections of figs, but the degree to which cospeciation or other processes contributes to the association at finer scales is unclear. Here we use genome-wide sequence data from a community of Panamanian strangler figs (Ficus subgenus Urostigma, section Americana) and associated fig wasp pollinators …

Employing Natural History Collections In The Aid Of Conservation: Streamlining An Approach To Model Species Distributions En Masse For The Preservation Of Biodiversity, Alice Fornari

Alice Fornari

Using species distribution models (SDMs) in Natural History Collections (NHCs) can influence how humans implement conservation changes in flora and fauna communities and ecosystems. Through the use of legacy data (old NHCs and their associated locality/collection information), data correction (background data or pseudo absences added to presence-only data), and the SDM software, Maxent (and its associated geographic information systems or GIS projected models), it has been shown that it is feasible to create a low budget protocol/setup to project the past, present and future of species population changes. This has been done in the past few decades as more collections …

Mercury Reduces Avian Reproductive Success And Imposes Selection: An Experimental Study With Adult- Or Lifetime-Exposure In Zebra Finch, Claire W. Varian-Ramos, John P. Swaddle, Daniel A. Cristol

Daniel Cristol

Mercury is a global pollutant that biomagnifies in food webs, placing wildlife at risk of reduced reproductive fitness and survival. Songbirds are the most diverse branch of the avian evolutionary tree; many are suffering persistent and serious population declines and we know that songbirds are frequently exposed to mercury pollution. Our objective was to determine the effects of environmentally relevant doses of mercury on reproductive success of songbirds exposed throughout their lives or only as adults. The two modes of exposure simulated philopatric species versus dispersive species, and are particularly relevant because of the heightened mercury-sensitivity of developing nervous systems. …

Reproductive Success Of Eastern Bluebirds (Siala Sialis) On Suburban Golf Courses, Kerri L. Cornell, Caitlin R. Kight, Ryan B. Burdge, Alex R. Gunderson, Joanna K. Hubbard, Allyson K. Jackson, Joshua E. Leclerc, Marie L. Pitts, John P. Swaddle, Daniel A. Cristol

Daniel Cristol

Understanding the role of green space in urban—suburban landscapes is becoming critical for bird conservation because of rampant habitat loss and conversion. Although not natural habitat, golf courses could play a role in bird conservation if they support breeding populations of some native species, yet scientists remain skeptical. In 2003–2009, we measured reproduction of Eastern Bluebirds (Siala sialis) in Virginia on golf courses and surrounding reference habitats, of the type that would have been present had golf courses not been developed on these sites (e.g., recreational parks, cemeteries, agriculture land, and college campus). We monitored >650 nest boxes …

Blood Mercury Levels Of Zebra Finches Are Heritable: Implications For The Evolution Of Mercury Resistance, Kenton A. Buck, Claire W. Varian-Ramos, Daniel A. Cristol, John P. Swaddle

Daniel Cristol

Mercury is a ubiquitous metal contaminant that negatively impacts reproduction of wildlife and has many other sub-lethal effects. Songbirds are sensitive bioindicators of mercury toxicity and may suffer population declines as a result of mercury pollution. Current predictions of mercury accumulation and biomagnification often overlook possible genetic variation in mercury uptake and elimination within species and the potential for evolution in affected populations. We conducted a study of dietary mercury exposure in a model songbird species, maintaining a breeding population of zebra finches (Taeniopygia guttata) on standardized diets ranging from 0.0–2.4 μg/g methylmercury. We applied a quantitative genetics …

The International Whaling Commission—Beyond Whaling, Andrew J. Wright, Mark P. Simmonds, Barbara Galletti Vernazzani

Mark P. Simmonds, OBE

Since its establishment in 1946 as the international body intended to manage whaling, the International Whaling Commission (IWC) has expanded its areas of interest to ensure the wider conservation of whales. Several key conservation topics have been taken forward under its auspices including climate change, chemical and noise pollution, marine debris and whale watching. Work on each of these topics at the IWC has grown substantially since the 1990s and remains ongoing. Important developments were the establishment of the Standing Working Group on Environmental Concerns in 1996 and the IWC’s Conservation Committee in 2003. Trying to address this diverse set …

Stable Isotopic Niche Predicts Fitness Of Prey In A Wolf–Deer System, C. T. Darimont, P. C. Paquet, T. E. Reimchen

Chris Darimont, Ph.D.

Interindividual variation in niche presents a potentially central object on which natural selection can act. This may have important evolutionary implications because habitat use governs a suite of selective forces encountered by foragers. In a free‐living native black‐tailed deer, Odocoileus hemionus, population from coastal British Columbia, we used stable isotope analysis to identify individual variation in foraging niche and investigated its relationship to fitness. Using an intragenerational comparison of surviving and nonsurviving O. hemionus over 2 years of predation by wolves, Canis lupus, we detected resource‐specific fitness. Individuals with isotopic signatures that suggested they foraged primarily in cedar ( …