Life Sciences Commons^™

Understanding Endangered Sawfish Through The Growth And Structure Of Their Rostral Teeth, Linh Truong, Gabe Gambleton, Jens Hegg

CURCI Student Research

Sawfish are an endangered ray with a toothy rostrum containing a large number of teeth. Largetooth sawfish are a critically endangered species worldwide. Little is known about their life history or behavior, and natural populations are too low to easily track them. Preserved rostra are more accessible to study. Measurements of the rostrum teeth and rostrum length were taken which may indicate a subspecies or sexual dimorphism in the sample. 120 sawfish rostra from the Brazil sample were quantified using ImageJ to compare rostrum size to fish age and length. Sawfish rostral teeth have repeated tubule structures within them that …

Pollinators Of Gonzaga University, Sophie O'Shei, Gary Chang

Biology Student Scholarship

This data is from a public science project conducted by Sophie O'Shei (Gonzaga '24) investigating pollinator diversity in and around Gonzaga's campus. Photos of plants and pollinators were submitted using iNaturalist, an online platform and app that allows users to upload photos of animals, plants, insects, etc. and identifies their species using AI. It also tracks where photos were taken. Users were then able to go through uploaded images and suggest what species they identify in the photo, which can confirm or correct the AI's identification.

The project started during Earth Week 2023, giving students, staff, and other members …

Repurposing The Calcium Biosensor Twitch-2b: Creating Transition Metal Detection Proteins Through Fluorescent Analysis, Sarah Mateer

Honors Projects and Presentations: Undergraduate

Metal ions are key in regulating many biological functions, but their accumulation is associated with neurological diseases. Cellular metal ion concentrations are often detected through exogenous fluorescent dyes, but less invasive and more specific detection can be done using genetically encoded FRET-enabled metal-binding proteins, such as Twitch-2B. Twitch-2B and other ratiometric proteins change conformation when a calcium ion is bound to the active site, initiating an energy transfer between two fluorescent peptides that can be quantified through fluorescent spectroscopy. Previous analyses have demonstrated that wild-type calcium binding can be accurately detected via this method for concentrations from 10 uM to …

An Engineered Artificial Selection System For The Directed Evolution Of Unnatural Cytochrome C Biosynthesis Enzymes, Noah Daniel Smith

Honors Projects and Presentations: Undergraduate

Cytochrome c (cyt c) is a small, stable electron transfer protein with a covalently ligated heme group that has shown promise as a target for catalyst design. Variation of the transition metal in the heme center of cyt c greatly affects the redox potential of the mature metalloprotein, but chemical substitution procedures are costly and difficult to scale. Nevertheless, artificial non-ferrous hemoproteins catalyze an abundance of interesting abiological transformations, and alternative preparation methods would allow for a broader exploration of their properties. Through laboratory evolution and enzyme activity studies, residues responsible for substrate specificity in heme c biosynthesis enzymes have …

Du Undergraduate Showcase: Research, Scholarship, And Creative Works: Abstracts, Emma Aggeler, Elena Arroway, Daisy T. Booker, Justin Bravo, Kyle Bucholtz, Megan Burnham, Nicole Choi, Spencer Cockerell, Rosie Contino, Jackson Garske, Kaitlyn Glover, Caroline Hamilton, Haley Hartmann, Madalyne Heiken, Colin Holter, Leah Huzjak, Alyssa Jeng, Cole Jernigan, Chad Kashiwa, Adelaide Kerenick, Emily King, Abigail Langeberg, Maddie Leake, Meredith Lemons, Alec Mackay, Greer Mckinley, Ori Miller, Guy Milliman, Katherine Miromonti, Audrey Mitchell, Lauren Moak, Megan Morrell, Gelella Nebiyu, Zdenek Otruba, Toni V. Panzera, Kassidy Patarino, Sneha Patil, Alexandra Penney, Kevin Persky, Caitlin Pham, Gabriela Recinos, Mary Ringgenberg, Chase Routt, Olivia Schneider, Roman Shrestha, Arlo Simmerman, Alec Smith, Tessa Smith, Nhi-Lac Thai, Kyle Thurmann, Casey Tindall, Amelia Trembath, Maria Trubetskaya, Zachary Vangelisti, Peter Vo, Abby Walker, David Winter, Grayden Wolfe, Leah York

DU Undergraduate Research Journal Archive

Abstracts from the DU Undergraduate Showcase.

Ain't No Sunshine When They're Gone: Pollinators In A Solar Prarie, Brigid M. Morgan

Honors Theses

Around the world, pollinator populations are decreasing due to climate change, habitat loss and fragmentation, invasive species, pesticide use, and disease. A solar prairie can provide that habitat space with native plants to attract and promote the growth of native pollinator populations. In this study at the University of Dayton in Dayton, Ohio, I sought to find out if native pollinators were using the habitats inside and around the solar panels at Curran Place. By using pan traps weekly throughout the summer months to collect the insects, I found that native pollinators are using the habitats between the rows of …

A Starling In A Pear Tree: Assessing The Influence Of Bird Dispersal On Callery Pear (Pyrus Calleryana), Olivia Clark

Honors Theses

Invasive species can disrupt ecosystems and negatively affect other species. Callery pear (Pyrus calleryana) is an invasive ornamental tree that is spreading quickly throughout the United States. It is possible that birds are responsible for spreading Callery pear by eating the fruit and depositing seeds in new areas. European starlings (Sturnus vulgaris) and American robins (Turdus migratorius) are mentioned in most studies as responsible for the dispersal of Callery pear. However, there is also evidence that Cedar waxwings (Bombycilla cedrorum) also feed on the tree. Invasive plants can impact avian health, reproduction, and migration. Additionally, there are many aspects of …

The Impact Of Anaerobic Exposure And Propionate On The Kinetics And Pathogenesis Of Listeria Monocytogenes, Mackenzie T. Martin

Honors Theses

Listeria monocytogenes is a foodborne pathogen commonly found in ready-to-eat deli and dairy products. This foodborne pathogen is responsible for the disease listeriosis, which disproportionately impacts immunocompromised individuals. This research aims to evaluate how natural intestinal environments influence the pathogenesis of Listeria. One particular environmental condition that has a well-documented effect on Listeria is varying levels of oxygen. Specifically, anaerobic exposure during the growth of Listeria greatly impacts subsequent intracellular pathogenesis. When grown and adapted under anaerobic conditions, Listeria overall exhibits decreased intracellular survival and decreased cell to cell spread. However, the presence of propionate, a natural byproduct of fermentation …

Establishing A Drosophila Colon Cancer Model To Study Interactions And Therapeutic Targets Of Oncogenic Pathways, Kathleen T. Mccaslin

Honors Theses

The objective of this project is to develop an in vivo colorectal cancer (CRC) model in Drosophila melanogaster to test the role of Ras and Wnt pathways in gastrointestinal cancer as potential therapeutic targets. To do so, we have (a) developed a CRC model in flies, (b) tested the levels of Ras and Wnt pathway activity in this model, and (c) will use drugs to find inhibitors of these pathways. Using fly mutants and transgenic flies we have created small patches of cancerous cells in the fly intestine in which have activated oncogenic Ras (mutation RasV12) and dominant negative p53 …

Full Issue: The International Undergraduate Journal Of Health Sciences, Volume 1, Issue 1, June 2021

International Undergraduate Journal of Health Sciences

The full June 2021 issue (Volume 1, Issue 1) of the International Undergraduate Journal of Health Sciences

Determine The Effects Of Propionate On The Interactions Between Macrophages And Listeria Monocytogenes, Stephanie M. Johnson

Honors Theses

Listeria monocytogenes is an opportunistic and intracellular foodborne pathogen that can be deadly in high risk populations. During infection in the human body, L. monocytogenes may encounter macrophages, a type of white blood cell that is critical in innate immune response both by directly targeting invading pathogens and by eliciting adaptive immune responses. During intestinal as well as peripheral infections, both L. monocytogenes and macrophages may encounter propionate, a common gut microbiome metabolite. Although propionate is shown to have various regulatory and nutritional functions, its effects on infection outcome is not well understood. Therefore, the goal of this research is …

An Exploration Of The Widely Observed Mechanisms Permitting Freeze Tolerance & The Potential Of Cope’S Gray Treefrog, Dryophytes Chrysoscelis, Samuel A. Ripley

Honors Theses

Over 80% of the Earth’s surface is exposed to seasonal cold temperatures less than 5.0oC. Ectotherms implement a variety of strategies to survive seasonal, or permanent, cold exposure. Some of the most common overwintering strategies are migration, hibernation, and freeze avoiding behavior. However, freeze tolerance is a minority choice among ectotherms. This strategy permits organisms to survive between 50.0 to 70.0% of their total body water volumes frozen primarily in extracellular spaces for up to several months at a time. Freeze tolerant organisms undergo minimal supercooling of their body fluids to ensure ice formation is slow and produce a wide …

Investigating The Effects Of A P53 Mutation And Various Tyrosine Kinase Inhibitors On Glioma Progression And Therapy Resistance In Drosophila, Kaitlyn M. Alleman

Honors Theses

Gliomas, which are brain tumors that arise from glial cells, are some of the most aggressive and lethal types of tumors. These brain tumors are difficult to treat because not enough information regarding the mutations present in these tumors exists. This project studies effects of a p53 mutation on Drosophila glioma progression and then will test to see if this results in resistance to current chemotherapy. The main goal of this endeavor is to investigate the numerous defects occurring at the cellular and biochemical level in gliomas, which will give insight into why these types of tumors are so difficult …

Leaf Phenology And Freeze Tolerance Of The Invasive Tree Pyrus Calleryana (Rosaceae) And Potential Native Competitors, Abby E. Hay

Honors Theses

Pyrus calleryana is quickly becoming one of the most problematic invasive species in the Eastern and Central part of the United States. Pyrus calleryana is an early successional species that quickly proliferates in highly disturbed soils such as old fields and younger prairies. Currently, this species poses a large threat to land managers as it changes the successional trajectories of forest and prairie systems, creating new novel ecosystems. Pyrus calleryana outcompetes most native early successional species and is relatively understudied. The mechanism in which Pyrus calleryana utilizes to dominate ecosystems are not fully understood, but one theory is Pyrus calleryana …

Determine The Effects Of Propionate On The Activation Of Macrophages Against The Intracellular Pathogen Listeria Monocytogenes, Leah O. Allen

Honors Theses

The main goal of this research is to see how propionate, a common food preservative and an important metabolite in humans, alters the activation of our immune system. The effects of propionate on macrophage activation will be determined by using nitrite and LDH assays. For these assays, different concentrations of propionate will be tested to determine how macrophages respond to the activation by LPS and interferon gamma. Another goal of this project is to determine the effects of propionate and macrophage activation on intracellular survival of L. monocytogenes. A gentamicin protection assay will be used to better establish the role …

Investigation Into The Genetic Provenance Of Three Rare Plants With East-West Disjunction Patterns In Pennsylvania., Scott Schuette, Christopher T. Martine

Other Faculty Research and Publications

Rare plant conservation relies on an understanding of the natural history, biology and ecology, and real and potential threats to their populations to inform state regulations that serve to protect the species from extirpation. This work often involves extensive field surveys over several years to determine population sizes and whether those populations are seeing reductions in number of individuals necessary to maintain the genetic diversity within and between those populations. Species and populations with high genetic diversity are better equipped to withstand sudden changes to their habitats that derive from land use changes and changing climate. There are a variety …

Implementing And Evaluating A Course-Based Undergraduate Research Experience (Cure) At A Hispanic-Serving Institution, Michele I. Shuster Phd, Jennifer Curtiss, Timothy F. Wright, Camilla Champion, Maryam Sharifi, Judith Bosland

Interdisciplinary Journal of Problem-Based Learning

We are examining the impact of a course-based undergraduate research experience (CURE) at a land-grant, Hispanic-serving institution in the southwestern United States. Students in our CURE completed one or two extended research projects over a single semester. Our CURE enrolled a high proportion of underrepresented minority students (70.3%), including 60.2% Hispanic students. One year after CURE completion, 31.5% of CURE students had graduated with a STEM degree, and 54.3% were enrolled in a STEM major. Pre- and postcourse surveys of indicators of persistence including scientific self-efficacy, scientific identity, valuing scientific community objectives, and intention to persist showed positive shifts. Impacts …

The Effects Of Sublethal Antibiotics On Listeria Monocytogenes, Marlena Rae Merling

Honors Theses

Antibiotics can be found in sublethal levels environmentally as pollution and within the body when used as medication. Antibiotics induce stress responses and sometimes act as signaling molecules in bacteria. In order to better understand the relationship between antibiotics and bacterial infections, the effects of sublethal antibiotic exposure on the ability of Listeria monocytogenes to infect macrophages was studied. Listeria monocytogenes is an intracellular pathogen of the gastrointestinal tract that is facultatively anaerobic. Two strains of Listeria monocytogenes were tested: a lab strain and a clinical cardiotropic strain. The strains were grown in liquid media overnight aerobically or anaerobically with …

The Effects Of L. Rhamnosus Consumption On Male Long Evans Rat Anxiety-Like Behavior, Amanda Marie Schleper

Honors Theses

Adolescent stress in humans has been correlated with an increased likelihood of an individual to develop an alcohol use disorder later in life. Literature has demonstrated that rats subjected to adolescent stress tend to show an increased preference and consumption of ethanol. Adolescence is a critical time of development. The link between adolescent stressors and alcohol use disorders is not fully understood yet. This study examined the relationship between adolescent stress and alcohol consumption and preference in rats. Probiotics are bacteria with potential health benefits and have been well accepted as a dietary supplement. Literature shows that probiotics could decrease …

Pathogenic Differences In Listeria Monocytogenes 10403s And Cardiotropic Strains Grown Under Aerobic And Anaerobic Conditions, Alexander Hayes

Honors Theses

Listeria monocytogenes is a gram-positive bacillus that is commonly associated with foodborne illness. It is a facultative intracellular pathogen responsible for causing the listeriosis infection in humans which is particularly dangerous to immunocompromised individuals. L. monocytogenes pathogenesis occurs through a series of complex interactions between host and bacterial cellular machinery. The wild-type strain as well as a cardiotropic strain with high affinity for infecting cardiac tissue were used to investigate pathogenesis in L. monocytogenes. Specifically, the Listeriolysin O protein that is critical for virulence was investigated. Aerobic and anaerobic growth environments as well as short-chain fatty acid supplementation were utilized …

Flourishing The Urban Environment: How Urban Gardens Affect Pollinators, Emily Ann Rickert

Honors Theses

The order of Hymenoptera is classified as bees, wasps, and ants and are widely recognized as pollinators. Some species of bees (family Apoidea) and hoverflies tend to focus on certain types of flowers and are attracted to patterns and colors. Native plants and crops that are specifically bee-friendly can encourage bees and other pollinators that are decreasing in biodiversity and population to come back. Urban gardens work to provide vegetables and organic produce to its communities and subsequently are also growing pollinator-friendly food. This study focuses on whether the biodiversity of Hymenoptera, hoverflies, and other significant pollinators are affected by …

In The Face Of Antimicrobialsfactors Contributing To Listeria Monocytogenes Survival And Development Of Resistance, Andrea M. Vietti

Honors Theses

Bacterial antibiotic resistance is on an alarming rise worldwide, thus posing an urgent threat to human health. The rise in antibiotic resistance can be attributed to the overuse and misuse of antibiotics in both the healthcare and agricultural industries. In order to address this concern, this research aimed to identify environmental conditions that may lead to the development of antibiotic resistance in Listeria monocytogenes. L. monocytogenes is a foodborne pathogen capable of causing the disease listeriosis and is especially dangerous for immunocompromised populations. Although infected individuals are treated with antibiotics, an alarmingly high mortality rate of 20 percent still persists; …

Propionate Enhances The Antimicrobial Defenses In Macrophages Against Listeria Monocytogenes, John Weis

Honors Theses

Propionate is a short chain fatty acid produced by the bacteria in the human gut. It has a wide range of nutritional functions in the human body. Several studies have also reported the effects of propionate on immune cell activation. In this study, we used Listeria monocytogenes as a model pathogen to determine how and what the effects of propionate on immune cells influence cell susceptibility to infections. Listeria is a dangerous intracellular pathogen that can replicate inside immune cells such as macrophages. Therefore, we can assess the impact of propionate on infection susceptibility by performing cell culture infections. We …

Analysis Of Change In The Biodiversity Of Fish And Macroinvertebrates Following Low Dam Modification And Kayak Chute Installation In The Great Miami River In Downtown Dayton, Ohio, Madison E. Conway

Honors Theses

Over two years, from 2015-2017, the Miami Conservancy District and Five Rivers Metroparks completed a project to modify the low dam above Monument Avenue into a kayak chute and constructed a second, entirely new kayak chute about one-half mile upstream near Riverscape Metropark in downtown Dayton, Ohio. Low dams have a negative impact on river habitat by decreasing water velocity in the impoundment behind the dam. Physical habitat, which should consist of alternating pools and riffles, is disturbed and replaced by deeper, slower-moving water that accumulates deposits of sediment on the river bottom degrading its value as habitat. The conditions …

Establishing The Effect Of Ethanol On Listeria Infection, Ryan Evan Restrepo

Honors Theses

Excessive alcohol consumption is common in the United States, particularly among college campuses. Previous studies have shown that excessive drinking increases the risk of drug dependency, sexual assault and liver damage. Heavy drinking has also proven to impact immune capabilities. Immune cell function and numbers have been shown to be negatively impacted by alcohol treatment. This research project used different cell cultures to model human cells and investigated how exposure to alcohol affects susceptibility to bacterial infection. Listeria monocytogenes, a common foodborne bacterium, was used as a model pathogen. A high alcohol preferring mouse model was also used to examine …

The Vascular Flora Of Bill Yeck Park: Supporting The Conservation Of Local Biodiversity, Taylor Sparbanie

Honors Theses

Maintaining and fostering biodiversity is a critical component of natural areas management and conservation because of its known links to ecosystem function and stability. Identifying and documenting species through a floristic inventory is an important strategy for detecting the presence of rare or unique species, as well as invasive species that pose a threat to biodiversity. Bill Yeck Park is a 194-acre nature park maintained by Centerville-Washington Park District and is largely surrounded by residential areas. The goal of this project was to generate list of vascular plant species for Bill Yeck Park, a large park within the Centerville-Washington Township …

Modulation Of Listeria Monocytogenes Carbon Metabolism By Short Chain Fatty Acids, Diksha Bedi

Honors Theses

Listeria monocytogenes, a bacterial pathogen, is associated with foodborne infections in humans. Listeria encounters short chain fatty acids (SCFAs) during its transit through the intestine but its metabolic responses to SCFAs are not fully understood. To determine how Listeria metabolism is affected by SCFAs, I performed basic microbiology assays, including monitoring optical density, determining acetoin production, and measuring culture pH levels. I also performed preliminary 13C-NMR assays to provide a more in-depth look into carbon metabolism in SCFA-treated Listeria. I found that propionate-supplemented Listeria produced significantly more acetoin compared to no supplemented controls. Because acetoin is a product of central …

The Prickly Problem Of Pears Potential Effects Of Native Orthopteran Herbivory On An Invasive Woody Plant, Kaitlin Gawkins

Honors Theses

Across the United States, land managers are struggling to cope with a relatively new invasive species, Callery pear (Pyrus calleryana). Callery pear is currently one of the most important invasive species threatening prairies and early successional habitats in Ohio and the Midwest, and yet, no viable means of control exists for this species. This species is relatively resistant to herbicides and resilient against prescribed cutting and burning. One potential management of invasive species is biocontrol, or the intentional introduction of natural enemies to control the growth and propagation of a target organism. Previous experiments with Callery Pear have examined herbivory …

Global And Gene-Specific Regulation In Freeze-Tolerant Anuran Dryophytes Chrysoscelis, Elizabeth Claire Sinnathamby

Honors Theses

Cope’s Gray Treefrog, Dryophytes chysoscelis, seasonally tolerates freezing. During this process, it is subject to cellular stress from factors such as metabolic starvation, DNA damage, toxin accumulation (from cellular metabolism), and the risk of protein misfolding. Preliminary transcriptome data indicates that many mRNA transcripts vary in relative abundance within hepatocytes of D. chrysoscelis during discrete periods of warm acclimation, cold acclimation, freezing, and thawing. Physiological changes that occur in this frog are likely the result of epigenetic regulation—an alteration in gene expression that does not influence DNA sequence. This modification in gene expression can be observed by the subsequent change …

Drosophila Tumor Mosaic Models To Study Intercellular Interaction, Minh T.D. Ho

Honors Theses

Drosophila is a powerful genetic model system to study cancer. In patients, a small number of mutations accumulate in cells that change their growth characteristics and eventually lead to the formation of tumors. These tumors are clonal in origin, meaning the cancer arose from the proliferation of a single rogue cell. We have developed similar "clonal" cancer models in the Drosophila brain to study how tumor cells interact among each other and with their neighbors. To study such interactions, we need to tag the tumor cells and their neighboring cells. Such differentially marked clone-pairs or ‘twin-spots’ are ideal for genetic …