Life Sciences Commons^™

Go With The Flow: Patterns Of Connectivity In Low Dispersal Coral Reef Gobies (Coryphopterus Spp.) Throughout The Western Atlantic, Daniel Volk

Electronic Theses and Dissertations

Gene flow is an integral biological process that can mediate speciation. While many consider the ocean to be an open environment, there are many barriers that limit gene flow, particularly in the western Atlantic. I analyzed data from two widespread, coral reef fishes, the bridled goby (Coryphopterus glaucofraenum) and sand-canyon goby (C. venezuelae), throughout their range in the western Atlantic. Using two genetic datasets, mitochondrial DNA (mtDNA) and genomic SNPs, I investigated the evolutionary history of these species and inferred the location and strength of putative barriers. My results suggest that several unique lineages have genetically diverged from one another …

The Paths Less Traveled: Movement Of Gopher Tortoises Along Roads And Railways, Rhett Rautsaw

Electronic Theses and Dissertations

Urbanization and an expanding human population have led to a large degree of habitat destruction and fragmentation. These, in turn, reduce biodiversity and wildlife population sizes on a global scale. Transportation infrastructure, such as roads and railways, are some of the largest contributors to habitat fragmentation. Roads are well-established to negatively impact wildlife, but some studies suggest a potential use in habitat connectivity by functioning as wildlife corridors to connect distant populations. Railways are similarly known to impact wildlife by increasing mortality rates as well as provide unique risks such as electrocution and entrapment when compared to roads. However, the …

H+- And Na+- Elicited Rapid Changes Of The Microtubule Cytoskeleton In The Biflagellated Green Alga Chlamydomonas, Yi Liu, Mike Visetsouk, Michelle Mynlieff, Hongmin Qin, Karl F. Lechtreck, Pinfen Yang

Biological Sciences Faculty Research and Publications

Although microtubules are known for dynamic instability, the dynamicity is considered to be tightly controlled to support a variety of cellular processes. Yet diverse evidence suggests that this is not applicable to Chlamydomonas, a biflagellate fresh water green alga, but intense autofluorescence from photosynthesis pigments has hindered the investigation. By expressing a bright fluorescent reporter protein at the endogenous level, we demonstrate in real time discreet sweeping changes in algal microtubules elicited by rises of intracellular H⁺ and Na⁺. These results from this model organism with characteristics of animal and plant cells provide novel explanations regarding …

Molecular Evolution Of Major Epidermal Structure Genes And An Integrative Transcriptome Analysis Of Chicken Epidermal Embryogenesis, Weier Bao

Theses and Dissertations

Αlpha (α) and beta (β) keratins are the major structural proteins found in vertebrate epidermis and the β-keratins are only found in reptiles and birds. With the recent published 48 avian genomes, we searched and studied the molecular evolution of these gene families. We discovered that the expansion and contraction of different α- and β- keratins among the 48 phylogenetically diverse birds supports the importance of their role in the evolution of the feathers and the adaptation of birds to different ecological niches. Using a customized 44K microarray, we also performed transcriptome analysis on different epidermal regions (scutate scale, dorsal …

Lifelines Winter 2017, Southern Adventist University

Lifelines - Biology Department Newsletter

The Winter 2017 issue of Lifelines contains articles on life-long learning, taskforce work at Shenandoah Valley Academy, an alumni spotlight, and a pictorial directory of the 2017 biology and allied health graduates.

Crassulacean Acid Metabolism As A Continuous Trait: Variability In The Contribution Of Crassulacean Acid Metabolism (Cam) In Populations Of Portulacaria Afra, Lonnie J. Guralnick, Kate Gladsky

Arts & Sciences Faculty Publications

Portulacaria afra L. is a dominant facultative CAM species growing in the Southeastern Cape of South Africa. P. afra is well adapted to regions of the Spekboom thicket in areas of limited and sporadic rainfall. P. afra populations occur in isolated drainages. We hypothesized the utilization of CAM would vary in the different populations in response to rainfall and temperature gradients. Carbon isotope composition can be used to determine the contribution of CAM in leaf tissue. P. afra leaves of populations were analyzed in transects running south to north and east to west in locations from the coast to elevations …

Towards A Better Understanding Of Secondary Metabolite Production In Toxic Marine Algae, Thuy My Nguyen

Electronic Theses and Dissertations

Roseofilum reptotaenium is a marine cyanobacteria responsible for the loss of 50% of corals worldwide due to Black Band Disease (BBD). Investigating the basis for secondary metabolite production by R. reptotaenium cultures revealed a suite of potent anti-malarial and anticancer compounds that likely include dolastatin 10 and monomethyl auristatin D (MMAD). These R. reptotaenium cultures are non-axenic (not pure monocultures) and R. reptotaenium appears to require the presence of several heterotrophic bacteria to survive. Scanning Election Microscope (SEM) images show closely associated bacteria. Preliminary metagenomic analysis indicates three dominant non-cyanobacterial phyla: Bacteroidetes, Planctomycetes, and Proteobacteri (?-proteobacteria accounted for >50% of …

Osm1 Facilitates The Transfer Of Electrons From Erv1 To Fumarate In The Redox-Regulated Import Pathway In The Mitochondrial Intermembrane Space, Deepa V. Dabir

Biology Faculty Works

Prokaryotes have aerobic and anaerobic electron acceptors for oxidative folding of periplasmic proteins. The mitochondrial intermembrane space has an analogous pathway with the oxidoreductase Mia40 and sulfhydryl oxidase Erv1, termed the mitochondrial intermembrane space assembly (MIA) pathway. The aerobic electron acceptors include oxygen and cytochrome c, but an acceptor that can function under anaerobic conditions has not been identified. Here we show that the fumarate reductase Osm1, which facilitates electron transfer from fumarate to succinate, fills this gap as a new electron acceptor. In addition to microsomes, Osm1 localizes to the mitochondrial intermembrane space and assembles with Erv1 in a …

Mercury Accumulation And Effects In The Brain Of Atlantic Sharpnose Sharks (Rhiszoprionodon Terranovae), Samantha L. Ehnert

UNF Graduate Theses and Dissertations

Sharks often bioaccumulate mercury (Hg) concentrations in their muscle to levels that threaten the health of human consumers. However, few published studies have examined if the high Hg levels seen in shark muscle also occur in the shark brain, or if Hg accumulation affects shark neurophysiology. Therefore, this study examined if shark brains accumulate significant levels of Hg, if Hg accumulation occurs in certain subcomponents of the brain, and if Hg accumulation is associated with oxidative stress effects on the shark central nervous system, with special focus on the Atlantic sharpnose shark (Rhizoprionodon terraenovae). Sharks were collected along …

The Soundscape Of The St. Johns River And Its Potential Impacts On The Habitat Use Patterns Of Bottlenose Dolphins, Carissa Deeann King

UNF Graduate Theses and Dissertations

The development of effective management plans for animal populations relies on an understanding of how the population is utilizing the habitat as well as the identification of any critical habitat areas. The St. Johns River (SJR), an urban estuary with a high level of anthropogenic disturbance, is home to a resident population of bottlenose dolphins (Tursiops truncatus). In chapter one, SJR dolphin habitat use patterns, the factors that influenced these patterns, and the critical habitat areas were identified. Significant associations were found in most pair-wise comparisons between season, behavioral state, group size, water depth, and location, indicating that …

Season, But Not Symbiont State, Drives Microbiome Structure In The Temperate Coral Astrangia Poculata., Koty H. Sharp, Zoe A. Pratte, Allison H. Kerwin

Arts & Sciences Faculty Publications

BACKGROUND: Understanding the associations among corals, their photosynthetic zooxanthella symbionts (Symbiodinium), and coral-associated prokaryotic microbiomes is critical for predicting the fidelity and strength of coral symbioses in the face of growing environmental threats. Most coral-microbiome associations are beneficial, yet the mechanisms that determine the composition of the coral microbiome remain largely unknown. Here, we characterized microbiome diversity in the temperate, facultatively symbiotic coral Astrangia poculata at four seasonal time points near the northernmost limit of the species range. The facultative nature of this system allowed us to test seasonal influence and symbiotic state (Symbiodinium density in the coral) on microbiome …

Passive Warming Reduces Stress And Shifts Reproductive Effort In The Antarctic Moss, Polytrichastrum Alpinum, Erin E. Shortlidge, Sarah M. Eppley, Hans Kohler, Todd N. Rosenstiel, Gustavo E. Zúñiga, Angélica Casanova-Katny

Biology Faculty Publications and Presentations

Background and Aims: The Western Antarctic Peninsula is one of the most rapidly warming regions on Earth, and many biotic communities inhabiting this dynamic region are responding to these well-documented climatic shifts. Yet some of the most prevalent organisms of terrestrial Antarctica, the mosses, and their responses to warming have been relatively overlooked and understudied. In this research, the impacts of 6 years of passive warming were investigated using open top chambers (OTCs), on moss communities of Fildes Peninsula, King George Island, Antarctica.

Methods: The effects of experimental passive warming on the morphology, sexual reproductive effort and stress physiology of …

Small Noncoding Rna Expression During Extreme Anoxia Tolerance Of Annual Killifish (Austrofundulus Limnaeus) Embryos, Claire L. Riggs, Jason E. Podrabsky

Biology Faculty Publications and Presentations

Small noncoding RNAs (sncRNA) have recently emerged as specific and rapid regulators of gene expression, involved in a myriad of cellular and organismal processes. MicroRNAs, a class of sncRNAs, are differentially expressed in diverse taxa in response to environmental stress, including anoxia. In most vertebrates, a brief period of oxygen deprivation results in severe tissue damage or death. Studies on sncRNA and anoxia have focused on these anoxia-sensitive species. Studying sncRNAs in anoxia-tolerant organisms may provide insight into adaptive mechanisms supporting anoxia tolerance. Embryos of the annual killifish Austrofundulus limnaeus are the most anoxia-tolerant vertebrates known, surviving over 100 days …

Embryonic Development Of The Annual Killifish Austrofundulus Limnaeus: An Emerging Model For Ecological And Evolutionary Developmental Biology Research And Instruction, Jason E. Podrabsky, Claire L. Riggs, Amie L. Romney, S. Cody Woll, Josiah T. Wagner, Kristin M. Culpepper, Timothy Grant Cleaver

Biology Faculty Publications and Presentations

Background: Austrofundulus limnaeus is an annual killifish from the Maracaibo basin of Venezuela. Annual killifishes are unique among vertebrates in their ability to enter into a state of dormancy at up to three distinct developmental stages termed diapause I, II, and III. These embryos are tolerant of a wide variety of environmental stresses and develop relatively slowly compared with nonannual fishes.

Results: These traits make them an excellent model for research on interactions between the genome and the environment during development, and an excellent choice for developmental biology laboratories. Furthermore, A. limnaeus is relatively easy to maintain in a laboratory …

Integrated Stress And Community Perceptions: Toward An Understanding Of Human-Cougar Tolerance, Lara Brenner

Graduate Student Theses, Dissertations, & Professional Papers

Evidence suggests that cougars (Puma concolor) are beginning to recolonize their traditional range in the Midwestern and Eastern US, returning to a landscape and a social environment that have changed drastically in a century of absence. Any hope of the cougar’s persistence depends on both human tolerance of their presence and on cougar tolerance of disrupted habitat. In this thesis, we took advantage of diverse cougar policy in place in the Western US to explore variation in human attitudes and acceptability of cougars and in the cougar stress response. We validated a process to identify and extract cortisol …

Insulin-Like Growth Factor Signaling Regulates Developmental Trajectory Associated With Diapause In Embryos Of The Annual Killifish Austrofundulus Limnaeus, S. Cody Woll, Jason E. Podrabsky

Biology Faculty Publications and Presentations

Annual killifishes exhibit a number of unique life history characters including the occurrence of embryonic diapause, unique cell movements associated with dispersion and subsequent reaggregation of the embryonic blastomeres, and a short postembryonic life span. Insulin-like growth factor (IGF) signaling is known to play a role in the regulation of metabolic dormancy in a number of animals but has not been explored in annual killifishes. The abundance of IGF proteins during development and the developmental effects of blocking IGF signaling by pharmacological inhibition of the insulin-like growth factor I receptor (IGF1R) were explored in embryos of the annual killifish Austrofundulus …

A Macroinvertebrate Bioassessment Of Two Streams On Turnbull National Wildlife Refuge (Tnwr), Sultan Mohammad Areshi

EWU Masters Thesis Collection

This project focused on highly impacted streams at Turnbull National Wildlife Refuge, Cheney, WA to evaluate the health status and ecosystem integrity of the water bodies. Turnbull National Wildlife Refuge contains over 3,000 acres of wetlands, and provides high quality habitat for migrating and breeding waterfowl. However, these wetlands are impacted by both high nutrient levels (Davidson and Rule 2006) and invasive fish (Scholz et al. 2003). This project focused on stream sections of the Company Ditch (CD) and Pine Draw (PD) watersheds. Company Ditch historically had very high nutrient levels and low water quality. Water quality may be improving …

Impact Of Prophylactic Intranasal Oxytocin Administration On Symptoms Of Post-Traumatic Stress, Morgan A. Thomas

EWU Masters Thesis Collection

Post-traumatic stress disorder (PTSD) is a mental health condition that affects people after instances of severe emotional trauma. Research suggests that oxytocin treatment decreases PTSD symptoms. This study served to evaluate the efficacy of intranasal oxytocin pre-treatment on symptoms related to PTSD. The hypotheses are that oxytocin will decrease fear and anxiety, and increase reward-seeking behaviors. Sprague Dawley rats were assigned to three groups (Control, Stress, Oxytocin, and Oxytocin+Stress; n=6 per group) to conduct this experiment. Prior to foot shock treatment, rats were trained to expect a food reward (Kellogg’s Froot Loops) in an open field enclosure. Subsequently, the Oxytocin …

Invasion Routes And Evolution Of Brook Stickleback (Culaea Inconstans) In Eastern Washington, Samuel Gunselman

EWU Masters Thesis Collection

Chapter 1. Invasive species pose a serious threat to native ecosystems. In eastern Washington brook stickleback (Culaea inconstans) is an important invasive species, especially at Turnbull National Wildlife Refuge, where they compete with waterfowl for food resources and are associated with declines in habitat quality. Understanding the invasion routes of this invasive species may help managers implement strategies to prevent further spread and mitigate damages caused by these fish. The objectives of this study were to identify the most likely point of brook stickleback invasion, to determine their most likely invasion routes, and to investigate landscape features and processes that …

Interactions Between Lake Trout And Bull Trout In The Priest Lake System, Idaho, Derek C. Entz

EWU Masters Thesis Collection

Seasonal and directional movements, and distributions of Bull Trout and Lake Trout between Priest Lake and Upper Priest Lake, Idaho, were studied from May 2015 to April 2017. Lake Trout (n=220) and Bull Trout (n=40) movements were monitored using Lotek JSATS transmitters and hydrophones both passively, using gate formations at either end of the Thorofare, and actively in both lakes. No significant difference was found between directional or seasonal movements of either species (P>0.05) and all movements were observed when water surface temperatures were below 15oC. Poisson regression analysis indicated that there were significantly more detections by the Upper …

Can Amphipods Be Used To Monitor Mining-Impacted Lakes?, Chantilly S. Higbee

EWU Masters Thesis Collection

Metal pollution in aquatic systems is complicated and expensive to manage; establishing a sentinel species for contaminated habitats, rather than measuring abiotic parameters, can provide a more complete perspective of the impacts of pollutants. I conducted a dual field/laboratory study to determine whether an amphipod (Hyalella azteca) can serve as a sentinel in a mining-impacted area in Northern Idaho, the Coeur d’Alene (CDA) River Basin. My objectives in the field study were to (1) determine seasonal abundance and metal burden of amphipods in nine chain lakes and a reference lake (Benewah L.) and (2) compare aqueous trace metal levels and …

Spatial Sequestration And Oligomer Remodeling During De Novo [Psi+] Formation, Douglas Lyke, Anita L. Manogaran

Biological Sciences Faculty Research and Publications

Prions are misfolded, aggregated, infectious proteins found in a range of organisms from mammals to bacteria. In mammals, prion formation is difficult to study because misfolding and aggregation take place prior to symptom presentation. The study of the yeast prion [PSI⁺], which is the misfolded infectious form of Sup35p, provides a tractable system to monitor prion formation in real time. Recently, we showed that the de novo formation of prion aggregates begins with the appearance of highly mobile cytoplasmic foci, called early foci, which assemble into larger ring or dot structures. We also observed SDS-resistant oligomers during …

Identification Of Multiple Functional Receptors For Tyramine On An Insect Secretory Epithelium, Haiying Zhang, Edward M. Blumenthal

Biological Sciences Faculty Research and Publications

The biogenic amine tyramine (TA) regulates many aspects of invertebrate physiology and development. Although three TA receptor subtypes have been identified (TAR1-3), specific receptors have not been linked to physiological responses in native tissue. In the Malpighian (renal) tubule of Drosophila melanogaster, TA activates a transepithelial chloride conductance, resulting in diuresis and depolarization of the transepithelial potential. In the current work, mutation or RNAi-mediated knockdown in the stellate cells of the tubule of TAR2 (tyrR, CG7431) resulted in a dramatic reduction, but not elimination, of the TA-mediated depolarization. Mutation or knockdown of TAR3 (tyrRII, …

Using Multiple Methodologies To Understand Within Species Variability Of Adelges And Pineus (Hemiptera: Sternorrhyncha), Tav Aronowitz

Graduate College Dissertations and Theses

The species of two genera in Insecta: Hemiptera: Adelgidae were investigated through the lenses of genetics, morphology, life cycle and host species. The systematics are unclear due to complex life cycles, including multigenerational polymorphism, host switching and cyclical parthenogenesis. I studied the hemlock adelgids, including the nonnative invasive hemlock woolly adelgid on the east coast of the United States, that are currently viewed as a single species. I used multivariate morphometric analyses to identify morphological differences among hemlock adelgid lineages. With principal component analyses and MANOVA, the six lineages that were used in this study were found to be significantly …

Co-Localization Of Basal And Proliferative Cells In The Murine Main Olfactory Epithelium And Vomeronasal Organ After Injury With Cyclophosphamide, Kyle Barnes Joseph

Graduate College Dissertations and Theses

ABSTRACT

In humans, advanced malignancies are often targeted with broad-spectrum cytotoxic drugs that engender several detrimental side effects, in addition to their primary usage for eradicating cancerous cells. One of the lesser-researched of these effects, histological distortion of the olfactory system impedes a patient's ability to smell, perceive flavor, and ultimately may interfere with their nutritional intake and recovery from chemotherapy. Recent studies have indicated that cytotoxic drugs can damage gustatory epithelia immediately following administration (Mukherjee & Delay, 2011, 2013). We sought to observe the histological effects that cyclophosphamide (CYP), one of the oldest and most popular alkylating antineoplastic agents, …

Synthesis Of N-Acetyl-ᴅ-Quinovosamine In Rhizobium Etli Ce3 Is Completed After Its 4-Keto-Precursor Is Linked To A Carrier Lipid, Tiezheng Li, K. Dale Noel

Biological Sciences Faculty Research and Publications

Bacterial O-antigens are synthesized on lipid carriers before being transferred to lipopolysaccharide core structures. Rhizobium etli CE3 lipopolysaccharide is a model for understanding O-antigen biological function. CE3 O-antigen structure and genetics are known. However, proposed enzymology for CE3 O-antigen synthesis has been examined very little in vitro, and even the sugar added to begin the synthesis is uncertain. A model based on mutagenesis studies predicts that 2-acetamido-2,6-dideoxy-d-glucose (QuiNAc) is the first O-antigen sugar and that genes wreV, wreQ and wreU direct QuiNAc synthesis and O-antigen initiation. Previously, synthesis of UDP-QuiNAc was shown to occur in vitro with a WreV …

Clinical Implications Of Augmenter Of Liver Regeneration In Cancer: A Systematic Review, Deepa V. Dabir

Biology Faculty Works

Background/Aim: Hepatocellular carcinoma is a substantial healthcare burden with high prevalence and poor prognosiS. As such, efforts are continually made to uncover molecules relevant in cancer biology, that are exploitable as targets for therapy. The mitochondrion is the powerhouse of the cell and exhibits altered functionality in the malignant state, including aberrant regulation of apoptosis and cellular respiration. Augmenter of liver regeneration (ALR) is a multifunctional mitochondrial protein that demonstrates antioxidative and anti-apoptotic properties and plays a key role in liver regeneration. Materials and Methods: The present study systematically reviews the available literature on the role of ALR in cancer. …

The Role Of Lipocalin-2 In The Hepatic Microenvironment Of Colorectal Cancer Metastasis, Daniel Titus Hughes

Theses and Dissertations

Colorectal cancer (CRC) is the second leading cause of cancer deaths in the United States. The major cause of death is metastasis and the frequent target organ is the liver. When diagnosed early at a localized stage, the five year survival rate after resection is 90%. However, after metastasis has occurred, this drops to less than 12%. Metastasis is often asymptomatic and diagnosed at the final stage when therapeutic options are limited. Because of this, the genetic and cellular mechanisms regulating metastasis are still poorly understood. Recent studies have shown that prior to the arrival of cancer cells at the …

Molecular Diversity Of Foliar Fungal Endophytes In Relation To Defense Strategies And Disease In Whitebark Pine, Lorinda Bullington

Graduate Student Theses, Dissertations, & Professional Papers

An invasive fungal pathogen, Cronartium ribicola (the causative agent of white pine blister rust) infects and kills whitebark pine (Pinus albicaulis) throughout the western US. Blister rust has decreased whitebark pine populations by over 90% in some areas. Whitebark pine, a keystone species, has been proposed for listing under the Endangered Species Act in the U.S., and the loss of this conifer is predicted to have severe impacts on forest composition and function in high elevations. Hundreds of asymptomatic fungal species live inside whitebark pine tissue, and recent studies suggest that these fungi can influence the frequency and …

Skeletal Stiffening In An Amphibious Fish Out Of Water Is A Response To Increased Body Weight, Andy J. Turko, Dietmar KüLtz, Douglas S. Fudge, Roger P. Croll, Frank M. Smith, Matthew R. Stoyek, Patricia A. Wright

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Terrestrial animals must support their bodies against gravity, while aquatic animals are effectively weightless because of buoyant support from water. Given this evolutionary history of minimal gravitational loading of fishes in water, it has been hypothesized that weight-responsive musculoskeletal systems evolved during the tetrapod invasion of land and are thus absent in fishes. Amphibious fishes, however, experience increased effective weight when out of water – are these fishes responsive to gravitational loading? Contrary to the tetrapod-origin hypothesis, we found that terrestrial acclimation reversibly increased gill arch stiffness (∼60% increase) in the amphibious fish Kryptolebias marmoratus when loaded normally by gravity, …