Life Sciences Commons^™

Mechanisms Behind The Chaperone Activity Of Nucleic Acids, Theodore J. Litberg

Electronic Theses and Dissertations

Understanding the interplay between nucleic acids and protein aggregation is integral to the understanding of proteostasis, aging, and neurodegenerative disease progression. Nucleic acids are known to modulate the aggregation of PrP, tau, ⍺-synuclein, and other disease relevant proteins. Although the interactions between misfolded protein and nucleic acids can play a role in disease, this interaction may potentially be beneficial as well. Our group and others have shown nucleic acids can be powerful chaperones. Previous work has shown both RNA and DNA can prevent protein aggregation and RNA can pass off protein clients to the heat shock protein (Hsp) system. Here …

Circadian Control Of A Time-Dependent Damage Response In Drosophila Melanogaster, Shahd Haddad

Electronic Theses and Dissertations

Circadian rhythms are physiological and behavioural processes that cycle in a 24-hour period, and they are driven by the circadian clock. The circadian clock is an internal molecular timekeeper that consists of a transcription-translation feedback loop, which controls the expression of many different genes, including ones involved in fasting-feeding and sleep-wake cycles, in a circadian rhythmic manner. The Drosophila intestinal epithelium is constantly renewed by intestinal stem cells (ISCs) and, during regeneration, Janus Kinase/Signal Transducer and Activator of Transcription (JAK/STAT) signalling drives increased ISC division and differentiation. Our lab has previously shown that regeneration is gated by the circadian clock. …

Exploring The Relationships Between Environmentally Influenced Foraging Behaviour, Energetics, And Breeding Decisions In Arctic Breeding Common Eiders, Erika Nissen

Electronic Theses and Dissertations

Migratory species breeding in polar environments face highly seasonal conditions and significant temporal and spatial constraints which can limit their ability to reproduce successfully. Effective energetic management is especially important at high latitudes, where a shortened breeding season and variable spring climatic conditions can restrict seasonal food availability, impact ability to initiate reproduction and successfully raise offspring. We explored this paradigm in marine benthic foraging common eiders (Somateria mollissima), at a long-term studied colonial nesting site at East Bay (Mitivik) Island, Nunavut, Canada. Eiders rely on marine prey to gain the energy necessary to invest in reproduction when arriving at …

Conceptualization And Perceptions Of Student Preparedness In Quantitative Reasoning Among Introductory Biology Faculty, Ann Cleveland

Electronic Theses and Dissertations

Quantitative reasoning (QR) is a crucial competency as undergraduate biology students complete their academic program and enter a workforce increasingly reliant on analyses of vast and complex data sets. The need to prepare biology majors for the 21^st century workforce was cited in Vision and Change: a Call to Action (American Association for the Advancement of Science [AAAS], 2011). The Vision and Change document also advocated for curriculum reform to incorporate QR instruction in undergraduate biology programs. Biology education researchers answered this call with a wealth of research examining undergraduate QR competencies, barriers and challenges to QR learning in …

Characterization Of Molecular Content, Cytotoxicity, And Anti-Inflammatory Activity Of Extractions From Eupatorium Serotinum, Jordy Sloan

Electronic Theses and Dissertations

Inflammation is a complex and varied immune response which can be expressed chronically or as a temporary reaction to foreign invaders. Symptoms of inflammation include swelling, pain, soreness, and difficulty of motion. Recently, the effect of sesquiterpene lactones such as Helenalin from Arnica montana have been studied for their anti-inflammatory properties. In this study, we identified and harvested samples of Eupatorium serotinum, a plant historically used by Native Americans to treat a variety of medical illnesses. Crude extracts of the leaves, flowers, roots, and stems were prepared by ethanol extraction. The cytotoxicity of the different extracts on HEK293 cells …

Comparative Energetics Of Mammalian Thermoregulatory Physiology, Ana M. Breit

Electronic Theses and Dissertations

Endothermy allows species to decouple body temperature from environmental
temperatures but does not equate to endothermic species maintaining those constant temperatures. Instead, heterothermy fluctuating body temperatures, both in and outside of torpor is common and allows endotherms to expand the limits of thermoneutrality. Thermolability is likely to be more common in the tropics and subtropics, where species live within or above their thermoneutral zone. My dissertation research focused on the heterothermic-homeothermic continuum, specifically quantifying where on the continuum different species fall at certain times and why those species have evolved to be at those points. I quantified the thermal profile …

Dolphin Behavioral Responses To Uncrewed Aerial Systems As A Function Of Exposure, Height, And Type, Savannah Damiano

Electronic Theses and Dissertations

Uncrewed aerial systems (UAS) are becoming a standard tool in the study of cetaceans, however, a comparative assessment of animal responses to UAS has not been established to gauge the most effective systems for cetacean study. We utilized Dolphin Quest Bermuda’s eleven bottlenose dolphins as subjects for such an investigation taking place over five weeks in 2022 and five weeks in 2023. The dolphins were evaluated for investigative behavioral responses to six off-the-shelf UAS types and a custom fixed wing system. Each UAS was flown in decreasing height vertically above the main dolphin lagoon to evaluate dolphin behavioral responses in …

Use Of Space And Foraging Behavior Of Loggerhead Shrikes In Urban Areas, Katie Anne Maddox

Electronic Theses and Dissertations

Loggerhead shrikes, Lanius ludovicianus, are a declining grassland songbird native to North America. Land-use change has been associated with the decline of grassland bird species. However, the process of urbanization creates novel short-grass habitats reminiscent of shrikes’ natural habitats. Loggerhead shrikes have been observed living in developed areas, particularly in Southeastern coastal states. Understanding the long-term impacts of urban-dwelling on loggerhead shrike populations is vital to identifying whether urban areas offer refuge or act as an ecological sink for shrike populations.

In chapter one, I quantified the use of space by shrikes in urban habitats within Horry County, South …

Neonate Atlantic Sharpnose Shark (Rhizoprionodon Terraenovae) Relative Abundance And Body Condition In Two South Carolina Estuaries Varying In Urbanization, Rileigh E. Hawk

Electronic Theses and Dissertations

Urbanization near estuaries has been shown to affect the growth and survival of juvenile sharks using the system as a nursery. North Inlet and Murrells Inlet, South Carolina, are similarly-sized, tidally-dominated, bar-built estuaries with extensive Sporobolus-lined tidal creeks but differ in degree of human impact. Previously, Murrells Inlet was shown to have a lower abundance and diversity of large sharks than North Inlet and Atlantic Sharpnose Sharks (Rhizoprionodon terraenovae) were shown to use North Inlet as a primary nursery. To examine potential differences in neonate shark abundance and growth between a developed estuary, Murrells Inlet, and a protected estuary, North …

Development Of Three Novel Edna Assays For Detecting Coastal Sharks, Kristina Dawn Flanigan

Electronic Theses and Dissertations

Environmental DNA (eDNA) analysis is an emerging, non-invasive community monitoring tool. This study aimed to determine if eDNA methods can be reliably used in a large brackish, partially mixed estuary by developing and testing three novel eDNA primers, for Sandbar Sharks (Carcharhinus plumbeus), Blacknose Sharks (Carcharhinus acronotus), and Bonnetheads (Sphyrna tiburo). These primers were designed to target 109, 156, and 120 base pair (bp) fragments, respectively, of the highly conserved NAD2 gene in the mitochondrial genome of each species. Primer function was validated through testing against 102 known genomic source samples and 25 filtered water samples from aquaria in which …

Neuronal Or Intestinal Knockdown Of C. Elegans Nadk-1 Decreases Oxygen Consumption And Reactive Oxygen Species, Jake Regan

Electronic Theses and Dissertations

Reactive oxygen species (ROS) such as H2O2 can damage cellular components and are formed as a byproduct of mitochondrial oxidative metabolism. Studies using the nematode C. elegans have found that increasing ROS during development or early adulthood can extend lifespan, while increasing ROS during later adulthood normally decreases lifespan. NADPH provides the reducing power for several cellular antioxidants and is synthesized in a two-step reaction from NAD+ with the first step being catalyzed by NAD kinase (NADK). In this study, the effects of knocking down C. elegans cytoplasmic NADK, nadk-1 globally or in a neuron or intestine-specific manner starting from …

Vibroacoustic Response Of The Tympanic Membrane To Hyoid-Borne Sound Generated During Echolocation In Bats, Chelsie Snipes

Electronic Theses and Dissertations

The hyoid apparatus in laryngeally echolocating bats forms a mechanical connection between the larynx and auditory bullae and has been hypothesized to transfer the outgoing echolocation call to the middle ear during echolocation call emission. We used µCT data to build models of the hyoid apparatus and middle ear from six species of bats and used finite element modeling (FEM) to measure the vibroacoustic response of the tympanic membrane due to hyoid-borne sound generated during echolocation. We found that hyoid-borne sound in all six species stimulated the eardrum within a range likely heard by bats. Although there were minor differences …

Deterrent Effects Of The Select Magnetic And Repellent Treated (Smarttm) Hooks And The Recently Developed "Smarter" Hooks On Sharks In Recreational Hook-And-Line And Longline Trials, Ryan Lowndes

Electronic Theses and Dissertations

As bycatch continues to impact global shark populations, there is a continuing need for effective bycatch reduction devices. Prior research has shown promise in exploiting sharks' electrosensory ability to this end. We tested the deterrent efficacy of the Select Magnetic and Repellant Treated (SMARTTM) and the newly developed "SMARTER" hooks in experimental longline and hook-and-line trials. Both are magnetized and contain an electropositive metal component made of magnesium (SMART) and a magnesium alloy designed to extend longevity (SMARTER). We deployed 127 longlines with SMART hooks, SMARTER hooks, controls, and procedural controls from 2021-2022 in Winyah Bay, South Carolina, and caught …

Transmission And The Evolution Of Diseases Caused By Chlamydia Trachomatis, Sars-Cov-2, And Plasmodium Species., Nathan Steffens

Electronic Theses and Dissertations

Principles of natural selection have proven valuable for explaining why pathogens cause the diseases that they do. In theory, the evolved level of host exploitation should reflect how dependent a pathogen is on host health for transmission. This dependency is shaped by transmission mode and transmission opportunity, which should therefore be predictors of disease manifestations. In this dissertation, I apply these principles to investigations of depression in Chlamydia trachomatis and virulence of SARS-COV-2 and Plasmodium species. This dissertation has five chapters. In chapter I, I describe the theoretical foundation of my dissertation research. I also briefly introduce each study system. …

Cyclic-Di-Gmp Regulates Salmonella Typhimurium Infection Of Epithelial Cells And Macrophages, Abdulafiz Musa

Electronic Theses and Dissertations

Regulation of the bacterial second messenger cyclic-di-GMP in Salmonella Typhimurium allows it to delicately alter phenotypes to optimize invasion and survive intracellularly in epithelial cells and macrophages to become virulent and cause infection. Cyclic-di-GMP concentration is regulated by the presence of external stimuli, sensory diguanylate cyclases (DGCs) and phosphodiesterases (PDEs), and cyclic-di-GMP binding effectors. Previous studies established that maintenance of low cyclic-di-GMP concentrations is required for survival in macrophages, and that deletion of 3 active PDEs reduces this survival. Here I showed that these 3 PDEs also influenced the infection of epithelial cells. Further studies re-established the decreased survival in …

The Evolution Of Empathy: Through The Lens Of A Rodent Model., Caroline Driscoll-Braden

Electronic Theses and Dissertations

Empathy is the capacity to be affected by and share the emotions of others, to discern the circumstances prompting another’s emotional state, and to identify with another by adopting their perspective. Research investigating the empathically motivated behavior of rats can help inform the evolutionary history of empathy and provide additional support of the continuity of empathy in animals and humans. In this dissertation, I examine the helping behavior of rats to explore the complexities of rodent empathy. In Chapter I, I review the multiple layers of empathy and describe both historical and contemporary research examining empathy in non-humans. I explain …

Examining The Effectiveness Of Probiotic Therapy For Improving Growth Performance Of Triploid Chinook Salmon (Oncorhynchus Tshawytscha) In Aquaculture Using A Behavioural Genomics Approach, Chelsea Frank

Electronic Theses and Dissertations

With an increasing human population, there has been increased production of fish to meet nutritional needs. Commercial aquaculture accounts for a significant portion of seafood production with salmonids being the major farmed finfish in Canada. To obtain greater biomass from aquaculture with minimal drawbacks (e.g., compromised flesh quality), triploidization has been implemented, altering ploidy from 2N to 3N, to induce sterility and promote energy investment towards somatic growth. Triploid individuals experience transcriptional and behavioural changes resulting in disease, mortalities, and reduced growth. Probiotic therapies (live microorganisms) have been recommended to potentially overcome drawbacks of triploidy and improve mass due to …

The Role Of Cort And Anaphase Promoting Complex/Cyclosome (Apc/C) In Drosophila Sex Determination And Meiosis, Abuzar Sikander Malik

Electronic Theses and Dissertations

The E3 ubiquitin ligase, APC/C, is essential for the completion cell cycle; along with its co-activators it allows mitotic exit and maintenance of G1. APC/C marks various substrates with ubiquitin chains; marked substrates are subsequently destroyed via the 26S proteasome pathway. Cort is a Drosophila female meiosis specific activator of APC/C. Cort works within meiosis in conjunction with Fzy to mediate Securin and cyclin destruction. A C-terminal IR-tail motif and a N-terminal C-box support Cort-APC/C interaction, whereas short motifs like D-box and KEN-box on the target protein impart substrate recognition to Cort. Cort expression is tightly controlled in the female …

The Black Soldier Fly, Hermetia Illucens Linnaeus (Diptera: Stratiomyidae): A Novel Approach To Combat Food Waste In Windsor-Essex., Patricia Obianuju Okpara

Electronic Theses and Dissertations

Within Ontario alone, approximately 3.7 million tonnes of organic food waste is generated yearly. This waste includes food scraps, wasted food, and plant wastes such as leaves, plant stems, and fruit. Most of it is transported to landfills for composting each year, but the use of landfills as a method of waste management is not sustainable. It adds strain to the environment by releasing harmful greenhouse gases and by demanding landfill space. The current protocols set by the Ontario government, while promising, do not address methods that support the safe disposal of organic waste and conversion into valuable end products …

Application Of Crispr/Cas9 Whole Genome Screens To Advance Macrophage Biology, Kevin Wanniarachchi

Electronic Theses and Dissertations

Advances in CRISPR/Cas9 gene editing technologies present opportunities to better understand the contribution of individual genes to complex eukaryotic cellular processes. I have applied CRISPR whole genome screen technologies to inform further mechanistic understanding of macrophage fitness and neutral lipid metabolism. This work is important because macrophages play critical roles in immune function and are implicated as causative agents in disease states. Chapter One of this dissertation provides insights into how CRISPR genome screening technologies have improved biological discovery and key findings from their application and discusses how this technology can be implemented to advance the discovery of novel macrophage …

Sustainability Practices In Aquaculture: Using Algae Turf Scrubber Biomass To Raise Black Soldier Flies As An Alternative Feed In Blue Tilapia, Oreochromis Aureus, Culture, Michelle C. Lowery

Electronic Theses and Dissertations

Since the 1980s, non-algal aquaculture has grown to encompass 49% of all seafood production in response to a growing human population and increased seafood demand (FAO, 2022). Hurdles exist to aquaculture sustainability, including dependence on wild sourced fishmeal (FM) and the impacts wastewater discharge. It takes 4-5 tons of wild forage fish to produce one ton of dry FM (Miles and Chapman, 2006) and as aquaculture is primarily conducted in earthen ponds and public open water bodies (FAO, 2022), finfish culture can have a high impact on the surrounding environment by discharging excess nutrients. This study used algae turf scrubber …

Dna Methylation And The Response To Infection In Introduced House Sparrows, Melanie Gibson

Electronic Theses and Dissertations

Epigenetics is the study of molecular modification of a genome without changing its base pairs. The most studied type of epigenetic mechanism is DNA methylation, which is capable of turning a gene “on” or “off.” Epigenetic potential is the capacity to which an individual can have methylation on its genome. The more CpGs available, the greater the epigenetic potential. In invasive species, genetic variation has been observed to be paradoxical: not much of it exists on a genomic level, but epigenetically, phenotypic variation can occur. The focus on shift in gene expression in this study is on Toll-Like Receptor 4 …

Endogenous Antioxidant Response And Lipid Peroxidation Levels In Muscle Tissue Of The Cownose Ray (Rhinoptera Bonasus), Bailey Berry

Electronic Theses and Dissertations

Oxidative stress is the result of an imbalance between reactive oxygen species (ROS) and antioxidant response within cells. ROS generation is a natural consequence of ETC activity within the mitochondria and is associated with aerobic metabolism. Oxidative stress data on elasmobranch muscle is limited, with previous studies primarily focusing on mammalian and teleost muscle. Elasmobranch skeletal muscle is generally composed of large proportions of white muscle fibers (anaerobic), low proportions of red muscle fibers (aerobic), and low proportions of pink muscle fibers (anaerobic). The cownose ray, a benthopelagic batoid species, presents an interesting model of study because it contains relatively …

Seroprevalence Of Sars-Cov-2 Antibodies Among Rural Healthcare Workers, Jordan Neises

Electronic Theses and Dissertations

The objective of this longitudinal cohort study was to determine the seroprevalence of antibodies to severe acute respiratory syndrome coronavirus-2 (SARSCoV- 2) in healthcare workers employed at healthcare clinics in three rural counties in eastern South Dakota and western Minnesota from May 13, 2020 through December 22, 2020. Three blood draws were performed at five clinical sites and tested for the presence of antibodies against the SARS-CoV-2 virus. Serum samples were tested for the presence of antibodies using a fluorescent microsphere immunoassay (FMIA), neutralization of SARS-CoV-2 Spike-pseudotyped particles (SARS-CoV-2pp) assay, and serum virus neutralization (SVN) assay. The seroprevalence was determined …

C3 And C4 Grass Dominated Plant Communities Differ In Response To Future Larger And Less Frequent Rainfall, Zigeng Chen

Electronic Theses and Dissertations

Climate change is leading to larger and less frequent rainfall in the Northern Great Plains (NGP). We ask if this change in rainfall would influence carbon (C) and nitrogen (N) cycling in the NGP. First, we collected soils from C3 and C4 grass dominated plant communities from western South Dakota and conducted an incubation experiment to explore the effects of soil water content (SWC) and temperature on soil respiration (Rs) and N mineralization rate (ΔIN). Second, we conducted a three-year rainfallmanipulation (RaMP) experiment with two distinct rainfall regimes (frequent/small and infrequent/large events with constant total monthly precipitation) and two grasses …

Characterization Of Parp1-Dependent Poly-Adp-Ribosylation Of Sprtn, Quincee Simonson

Electronic Theses and Dissertations

DNA-protein crosslinks (DPCs) are a type of DNA lesion that form when proteins become covalently linked to DNA. It is estimated that replicating cells experience approximately 6,000 DPCs per day per genome during exponential growth (Ruggiano & Ramadan, 2021). If left unrepaired, DPCs can be lethal to cells. For this reason, cells have evolved multiple pathways to repair or bypass DPCs to survive. One such pathway involves SPRTN, a nuclear metalloprotease that plays a key role in the repair of DPCs through direct proteolysis (Lopez-Mosqueda et al., 2016; Vaz et al., 2016). Once SPRTN degrades the bulky protein component of …

The Influence Of Administrative Timing In Triple-Negative Breast Cancer Treatments, Emily Mailloux

Electronic Theses and Dissertations

Breast cancer accounts for 25% of all cancers in Canadian women, and 15-20% of these are triple-negative breast cancers (TNBC), which have a poorer prognosis than other breast cancer subtypes. TNBC lacks expression of the estrogen receptor, progesterone receptor, and the human epidermal growth factor receptor 2 (HER2), which are common therapeutic targets in breast cancer. Due to the lack of target therapy, generalized chemotherapy treatments are used instead. The standard of care for treatment of TNBC instead consists of doxorubicin (A), cyclophosphamide (C) paclitaxel (T), and carboplatin (Carbo), that target various aspects of the cell cycle to induce cell …

Genetic Characterization Of Centromere-Mediated Uniparental Genome Elimination In Arabidopsis, Diana Spencer

Electronic Theses and Dissertations

The production of haploids through crossing was first discovered from instances of interspecies crosses in Nicotiana spp. in 1924. Since then, haploid induction crosses has been used to improve plant breeding programs and commercially utilized in a number of crop industries. The generation of doubled haploid instantaneously creates a pure homozygous line, therefore eliminating the need for several generations of inbreeding. There are several pathways to induce haploids in plants: of these methods, centromere-mediated genome elimination pathway engenders the highest haploid induction rate (HIR) with up to 45% in Arabidopsis compared to 15% through phospholipase-mediated haploid induction in maize. Centromere-mediated …

Abundance And Growth Of Juvenile Atlantic Sturgeon In The Edisto River, Sc, Molly Katherine Takacs

Electronic Theses and Dissertations

Information on abundance and body growth are important for understanding the status and health of populations, and this information can be used to guide and monitor conservation and recovery efforts for species of conservation concern. The Atlantic Sturgeon (Acipenser oxyrinchus oxyrinchus) is an anadromous fish native to the Atlantic coast of the United States and Canada. Due to overfishing and habitat degradation, population levels declined, and Atlantic Sturgeon were placed on the Endangered Species list in 2012. Although there is substantial research on adult Atlantic Sturgeon, knowledge about their early life history is lacking. The objective of this study were …

Fine-Scale Site Selection Of Strand-Feeding Common Bottlenose Dolphins (Tursiops Truncatus) And Their Prey, Deborah Kleinclaus

Electronic Theses and Dissertations

Strand-feeding is a unique, cooperative foraging strategy used by some common bottlenose dolphins (Tursiops truncatus) at low tide in South Carolina and Georgia salt marshes, where a group of dolphins charges schools of fish, thrusting them onto the bank with their bow wave and then capturing prey items onshore. Strand-feeding dolphins are estuarine residents and frequent predictable stranding sites, suggesting an intimate knowledge of the area. Dolphin behavior prior to stranding suggests they do not herd the fish before charging, but instead prey on fish already shoaling near the bank. The use of active acoustics from strand-feeders in order to …