Life Sciences Commons^™

Treatment Of Yellow Fever Virus With The Ns4b Inhibitor Bdaa And Effects On Rna‐Sensing Innate Immune Pathways In Hamster And Mouse Models, Abbie E. Weight

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Yellow fever (YF) is an acute and often severe disease cause by yellow fever virus (YFV). Although there is an effective vaccine available to prevent YF, there are no antiviral drugs approved to treat the disease, which has a considerable disease burden in endemic areas of South America and Africa. BDAA is an experimental antiviral treatment which has shown efficacy against YFV both in cell culture and when administered before infection in an animal model of disease. BDAA targets the YFV protein NS4B and has two reported mechanisms of action: the primary mechanism of action is the direct inhibition of …

A Mechanistic Examination Of Interspecific Competition Between Wild And Domestic Herbivores, Courtney Check

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Large herbivores, such as mule deer and cattle have similar life histories and likely compete for resources. However, quantifying the extent to which these species compete and the specific resources they compete for has proved challenging. My research examines if cattle influence deer abundance and behavior due to competition for forage, competition for shade, and/or by affecting the predation risk of deer. Using a grid of autonomous trail cameras, I was able to determine if cattle abundance influences local deer abundance in relation to specific resources and habitat features. Using GPS data from collared deer, I was also able to …

Consumption Of A Western Diet Enhanced Colitis-Associated Colorectal Cancer And Dysbiosis Of The Fecal Microbiome In Mice Notwithstanding Dietary Intervention Or Fecal Microbiome Transfer, Daphne Michelle Rodriguez Jimenez

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In a rodent model of inflammation-associated colorectal cancer, consumption of a Western-style diet increases gut inflammation and enhances risk of developing colon tumors. The goal of this dissertation was to understand the contribution of bacteria within the large intestine on colon inflammation and colon tumorigenesis. Two pre-clinical animal studies were performed using two different intervention strategies to shift the microbiome, and potentially gut inflammation and tumor development: 1) an experiment using dietary supplementation with black raspberries, a functional food enriched in bioactive anthocyanins with purported antiinflammatory activity, and 2) an experiment using fecal microbiota transfer from mice fed a healthy …

Anthropogenic Factors Affecting Common Raven Occurrence And Depredation Of Artificial Nests Within Greater Sage‐Grouse Habitat In Southern Utah, Zoë S. Moffett

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Certain species of wildlife are more generalist and adaptive than others. These species often flourish when supported by human activities that provide additional food and habitat for them. The common raven (Corvus corax; hereafter raven) is one such species; their populations have risen and spread throughout the Intermountain West. As generalist scavengers and predators, ravens have been found to pose a severe threat to several threatened or sensitive species, including the greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse). The purpose of my research was to determine the specific anthropogenic and habitat factors that may increase the threat …

Multispecies Genomic Sex Identification Using Ddx3 Gene Polymorphisms, Jessica Felts

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

PCR sex determination assays must be reliable and cost effective due to the frequent and integral use of these assays in biological research and the animal production industry. Thus, the design of proof of a primer pair with a built-in control is warranted to not only bypass the extra cost of a multiplex reaction, but also to prevent anomalous results that have been documented with other primer pairs.

The objective of this study was to design primer pairs with built in PCR amplification control to identify sex in Equus caballus (domestic horse), Homo sapiens (humans), Macaca mulatta (rhesus macaque), and …

Establishment Of A Transgenic Human Angiotensin Converting Enzyme-2 Hamster Infection Model For The Evaluation Of Therapeutics Against Severe Acute Respiratory Syndrome Coronavirus 2, Scott A. Gibson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The virus SARS-CoV-2 emerged in late 2019 and has gone on to spread throughout the global population. The virus is still the cause of a healthcare crisis two years after being identified. Viral infection in humans leads to the development of the disease COVID-19. A complex disease that can result in a wide variety of outcomes for infected individuals. In the majority of individuals, COVID-19 will manifest as either an asymptomatic disease state or a mild to moderate disease state that is resolved in approximately one week. In some infected patients COVID-19 will manifest with the rapid onset of severe …

Effect Of Increasing Levels Of Gossypol And Fatty Acids Coming From Whole Cottonseed On Rumen Fermentation, Nutrient Digestibility And Microbial Community Composition In Continuous Culture Fermenters, Camila Castro Veloz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In this study we determined the impact of increasing dietary whole cottonseed (WCS) on rumen fermentation, nutrient digestibility, and microbial community composition. This study contributes novel information to the dairy community deepening the understanding of how including different levels of WCS can affect the rumen environment. This research was conducted in continuous culture fermenters. Treatments included a control diet without WCS, or the control diet plus 5, 10, or 15% (dry matter) WCS. The control diet was a 50:50 orchardgrass hay:concentrate mixture fed twice daily. In the second experiment, soybean meal and cottonseed meal (CSM) were included, and rations were …

Habitat Selection By Desert Carnivores: How Water, Intraguild Predation, And Prey Impact Animal Space Use, Nadine A. Pershyn

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Across North America large carnivores have lost nearly half of their historic range, creating openings for smaller (< 15 kg) carnivores to take over their ecological roles. Coyotes (Canis latrans) have seen a significant range expansion, including into arid deserts. It was believed that the addition of artificial water sources by humans allowed coyotes to expand into desert ecosystems where they were previously unable to survive. The kit fox (Vulpes macrotis) is a small, desert-adapted carnivore with declining populations that faces threats from coyotes of intraguild predation. This is when carnivores compete over the same prey, and the larger carnivore (intraguild predator) kills the smaller carnivore (intraguild …

Social Factors Driving Grouping Dynamics In Bighorn Sheep Ewe, Toni Proescholdt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Understanding and predicting movement is critical for conservation planning and disease risk mitigation, and important environmental drivers of animal movement have received extensive attention in the ecological literature. Social factors surrounding group fission and fusion events also directly affect movement. However, these events are infrequently measured in the wild and rarely linked to underlying mechanisms such as relatedness, agreement in reproductive status, or shared life stage. While some social factors cannot be directly observed in the field, individual animals congregating in groups and moving about a landscape can. In animal societies, groups may merge together in a fusion event, and …

Using Cytoplasmic Biopsies To Determine Bovine Oocyte Quality, Madison Lindsey

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Embryos resulting from assisted reproductive technologies, such as in vitro fertilization (IVF) or intracytoplasmic sperm injection (ICSI), develop with lower efficiencies than embryos resulting from their in vivo counterparts. The reasons behind the developmental discrepancies remain largely unknown. Because the egg is the primary determinant of embryo developmental success, it is reasonable to consider inherent egg quality as a possible cause. The hypothesis for this project is that there are distinct mRNA transcript patterns, or molecular “fingerprints,” that distinguish high- versus low-quality eggs developing within the same environment. In this study, a small cytoplasmic biopsy was removed from 40 eggs …

Skeletal Muscle Growth Of Beef Cattle: Cattle Breed Types And Anabolic Implants, Caleb C. Reichhardt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Two potential methods that can be used by the U.S. to help further improve environmental and economic sustainability of the beef industry are through the use anabolic implants, typically composed of the hormones estradiol and trenbolone acetate, and by crossbreeding Bos taurus and Bos indicus cattle. How anabolic implants operate to improve growth, and their resulting relationship with different cattle breed types have yet to be determined. However, crossbreeding these cattle breed types has been found to have a positive influence on economically important traits such as average daily gain and carcass characteristics. Therefore, we hypothesized that the different hormones …

Effects Of Providing Novel Feedstuffs To Livestock On Production And Skeletal Muscle Growth, Laura A. Motsinger

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As the population increases and available land for food production decreases, it is necessary for livestock producers to continually work towards increasing livestock production efficiency. In livestock operations, feed accounts for the majority of input costs associated with raising livestock. As such, it is necessary to improve growth and production of livestock animals, while also optimizing feed utilization. Different feedstuffs can be included in the diet of livestock animals to maximize growth and production. However, the effects of some of these novel feedstuffs on growth and production of livestock animals has not been elucidated. As such, we investigated the effects …

Greater Sage-Grouse Brood Responses To Livestock Grazing In Sagebrush Rangelands, Hailey Peatross Wayment

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The distribution and abundance of the greater sage-grouse (Centrocercus urophasianus; sage-grouse) have declined in the last 60 years. Range contractions and population declines have been attributed to loss and fragmentation of their sagebrush (Artemisia spp.) habitats. Grazing by livestock remains the predominant anthropogenic land-use across sagebrush ecosystems in North America, occurring on 87% of remaining sage-grouse habitat. Most of the peer-reviewed literature reports the potential for negative impacts of sagebrush reduction treatments, to increase livestock forage, on sage-grouse habitat. However, few studies have linked livestock grazing at the landscape level to vital rates (e.g., nest initiation rates, …

Impact Of Ph And Palmitic Acid On Ruminal Fermentation And Microbial Community Composition, Lexie Padilla

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The objective of this study was to evaluate the effects of dietary palmitic acid and pH on rumen fermentation, fiber digestibility, and bacterial community composition. The two factors in the experiment were palmitic acid treatment and pH treatment. Palmitic acid treatments included a control diet compared to a diet containing 1.5% palmitic acid. pH treatments included normal pH (6.6 to 7.0) compared to low pH (6.0 to 6.4). Rumen fluid from a cow was added to artificial rumens to study the effects of the two treatments relative to fermentation and changes within the microbial community. Results of the study showed …

Intraspecific Variation In Prey Susceptibility Mediates The Consumptive Effect Of Predation: A Case Study Of Yellowstone Elk And Wolves, Lacy M. Smith

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The reintroduction of wolves (Canis lupus) to Yellowstone National Park starting in 1995 is an important case study for understanding the consequences of predation on a prey population. Simulation studies conducted prior to and shortly after wolf reintroduction predicted that wolf predation of elk (Cervus canadensis) would have a modest influence on elk abundance. Predation of elk by wolves has been well documented and elk have remained the primary prey for wolves despite a decline in elk abundance. I used two quantitative approaches to estimate the influence of wolf predation on adult female elk survival and …

Impact Of Fish Oil On Intestinal Permeability, Inflammation, And Performance In Swine, Anthony Fernando Alberto

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Our research examined the effects of fish oil supplementation on intestinal permeability, systemic inflammation and performance in piglets. An lipopolysaccharide (LPS) challenge was done to stimulate the synthesis and release of the cytokines, in an effort to mimic the immune response that piglets would have when facing stress or pathogen challenge. Fish oil increased feed intake but did not affect growth when compared to control. Total fatty acid digestibility increased by 6% when fish oil was included in the diet. Also, we observed a 16% increase on 16-carbon fatty acids digestibility. Fish oil did not affect the plasma …

The Effects Of Trace Mineral Supplementation On Performance, Health, And Carcass Quality Of At-Risk Mineral Deficient Feedlot Cattle, Tevan J. Brady

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Morbidity in feedlot cattle due to disease is a common economical loss for feedlot producers. Utah is not typically considered a ‘feedlot state’, but there are several producers in the southern part of the state that specialize in receiving at-risk cattle. These cattle are at-risk because they are coming from areas known to be mineral deficient. Areas such as the western US, are known to be deficient in several trace minerals important in immune response. Therefore, it is critical that producers have an adequate plan to decrease the negative effects that this has on economic viability of their beef operations, …

Investigation Of Methionine And Lysine Derivatives As A Source Of Rumen-Protected Amino Acids For Lactating Dairy Cows, Mark Avila Fagundes

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Cows have a protein requirement for growth, maintenance, and lactation. In order to meet those protein requirements, dairy farmers can supplement or feed cattle with specific amino acids, the building blocks that make-up protein. However, in order for the amino acid product to be effective it must avoid degradation in the rumen and be delivered in the small intestine for absorption. Lysine and methionine have traditionally been recognized as the most limiting amino acids for lactating dairy cows. Therefore, nutrition companies have focused on finding ways to encapsulate or protect lysine and methionine from rumen microbes. The N-acetyl-L-methionine and N-acetyl-L-lysine …

Novel Polymorphisms Of Zrsr2 And Gpm6b Gene Homologs And Their Use In Sex Identification Of Bovine And Porcine Species, Evan K. Peterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Accurate and cost-effective PCR based sex identification is important in animal production because it gives producers the ability to determine the sex of embryos prior to transfer, saving time and money. The most efficient PCR sex identification assays work by using a single primer pair to amplify a specific target region located on the Y-chromosome and a second, separate target region on the X-chromosome.

This thesis reports the design of two novel assays. The first assay was designed to target the Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 (ZRSR2) gene found on the X-chromosome and its Y-chromosome …

Demographics, Accuracy, And Impact Of Feed Laboratories In The United States, Jerald H. Severe

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Feed analysis is very important to modern society. In the United States feed analysis is used to optimize production of food animals. Feed analysis is also used as a tool to place value on crops. As important as feed analysis is to society, little research has been done that describes which feed laboratories are the most popular and why people use them. It has been thought by some patrons that different results from the same feed sample are obtained by different laboratories. Is this true? If so, what is the effect on those that use feed laboratories to produce animals, …

Rumen Fermentation Responses To Purified Palmitic, Stearic, Or Oleic Fatty Acids And The Impact Of A Palmitic Acid-Enriched Supplement On Animal Performance, Austin Paul Sears

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Our research examined the responses of palmitic, stearic and oleic fatty acids on neutral detergent fiber (NDF) digestibility and rumen fermentation and the impact of a palmitic acid-enriched supplement on animal performance. In the first research chapter, we evaluated the effect of purified palmitic, stearic, and oleic fatty acids on NDF digestibility and rumen fermentation. Palmitic acid increased NDF digestibility and total production of volatile fatty acids (VFA) compared with oleic acid. Bacterial fatty acid composition was altered by palmitic acid, increasing anteiso-C15:0, C18:2n6 and C18:3n3 fatty acids compared with oleic acid. Compared with control, …

Effects Of Premortem Stress On Heat Shock Protein Abundance, Oxidation, And Color In The Longissimus Lumborum Of Holstein Steers Following Harvest, Reganne K. Briggs

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Consumers consider tenderness and steak color to be two important attributes associated with meat quality. However, inconsistencies in both tenderness and steak color remain despite similar production practices of beef cattle. Stressful events before harvest may impact meat quality by initiating certain pathways such as abundance of heat shock proteins (HSP) and oxidation within the skeletal muscle. Heat shock proteins have been associated with tenderness while oxidation may affect steak color and flavor. In this study, 40 Holstein steers were administered adrenocorticotrophic hormone (ACTH) to mimic a stressful event before harvest. Animals were harvested at different times following the ACTH …

Comparative Analysis Of Small Non-Coding Rna And Messenger Rna Expression In Somatic Cell Nuclear Transfer And In Vitro-Fertilized Bovine Embryos During Early Development Through The Maternal-To-Embryonic Transition, Jocelyn Marie Cuthbert

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Cloning animals using somatic cell nuclear transfer (scNT) was first successfully demonstrated with the birth of Dolly the sheep, but the process of cloning remains highly inefficient. By improving our understanding of the errors that may occur during cloned cattle embryo development, we could obtain a greater understanding of how specific molecular events contribute to successful development. The central dogma of biology refers to the process of DNA being transcribed into messenger RNA (mRNA) and the translation of mRNA into proteins, which ultimately carry out the functions encoded by genes. The epigenetic code is defined as the array of chemical …

The Effects Of Different Organic Pastures On Dairy Heifer Growth And Development, Jacob A. Hadfield

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Raising dairy heifers in a certified organic setting can be difficult for producers. Conventionally, heifers are raised in a confined setting, and fed a total mixed ration (TMR) that is balanced daily to contain all the needed nutrients for developing heifers. Organic producers can use a TMR in their operations, but due to high organic feed costs, many choose to raise their heifers in pasture-based systems. While pasture-based systems may lower costs, heifers on pasture commonly have lower rates of gain, which can be financially burdensome to producers. Grass-legume pastures may help improve rates of gain in heifers on pasture-based …

Enhancing The Production And Sustainability Of Pasture-Fed Beef Using Non-Traditional Legume Forages, Andrea I. Bolletta

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Despite the increasing worldwide demand for beef as a protein source, consumers are concerned about the sustainability of ruminant production systems. Their main concerns are animal welfare for feedlot-fed animals, greenhouse gas (GHG) emissions, global warming and worker safety. Traditional feedlot-based beef production systems have been associated with locally greater levels of soil, water and air contamination, as well as the overuse of antibiotics and growth hormones. The use of legume pastures such as cicer milkvetch (CMV) and birdsfoot trefoil (BFT), which fix their own nitrogen (N) and often contain beneficial secondary compounds such as tannins and provide for rapid …

Influence Of Forage Diversity And Condensed Tannins On Livestock Foraging Behavior, Production And Environmental Impact, Sebastian P. Lagrange

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Eating a combination of forages with different chemistries (i.e., nutrients, beneficial compounds such as tannins) may enhance ruminant nutrition and reduce environmental impacts relative to eating single forages. I explored the influence of offering sheep and cattle all possible combinations of tanniferous (i.e., plants with tannins; birdsfoot trefoil, sainfoin) and non-tanniferous legumes (i.e., plants without tannins; alfalfa) or their monocultures on animal performance, behavior, and methane and nitrogen (N) emissions. Offering choices among these legumes to penned sheep improved intake and diet digestibility relative to feeding monocultures. Mixtures selected by sheep were better digested than mixtures containing equal parts of …

The Effects Of Gene Therapy In An Ovine Osteoarthritis Model, Crystal Collier

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Humans rely on the health of their joints for stability and mobility in daily life. In a normal, healthy functioning joint, complex processes maintain joint tissues, including remodeling, lubrication, and immune function among many other tasks. Osteoarthritis (OA) is the most common joint disorder in the U.S. It becomes most prevalent in adults 60+ years of age and causes decreased mobility, discomfort, and in some cases, excruciating pain. In the biological processes of osteoarthritis, the metalloproteinase enzymes responsible for the degeneration of cartilage are upregulated. The inhibitors of metalloproteinase activity are known as Tissue Inhibitor of Metalloproteinases (TIMPs), which keep …

Crispr/Cas9-Mediated Gene Editing In Herda Equine, Joseph R. Hawkes

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

HERDA (Heritable Equine Regional Dermal Asthenia) is a genetic skin disease mainly found in Quarter Horses, but also in Appaloosa and American Paint breeds. HERDA is similar to Ehlers-Danlos syndrome in humans, with symptoms including stretchy skin, hyperflexible joints, and, unique to HERDA equine, spontaneous skin sloughing. Horses affected by HERDA are not suitable for performing and are oftentimes euthanized. Some carriers for the HERDA-mutation are very competitive in the American Quarter Horse industry, especially in cutting events where it is believed, yet unproven, to give them an advantage with increased flexibility. It is also possible that the genomic locus …

Forest Grouse Ecology And Management In The Bear River Range Northern Utah, Skyler Y. Farnsworth

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

To better manage dusky grouse (Dendragapus obscurus) and ruffed grouse (Bonasa umbellus), hereafter forest grouse, managers require better information on forest grouse population status and habitat selection. To address this need, from 2015-2017, I conducted research on a sympatric populations inhabiting the Bear River Range of northern Utah to develop a breeding survey protocol, assess habitat selection, evaluate dusky grouse response to livestock grazing, and determine hunter harvest rates.

The breeding census protocol that I developed compared listening intervals with and without electronic playback calls at designated survey stop locations. Using digital mapping software, I plotted …

North Dakota Greater Sage-Grouse (Centrocercus Urophasianus) Recovery Project: Using Translocation To Prevent State-Wide Extirpation And Develop Rangewide Protocols, Kade D. Lazenby

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Greater sage-grouse (Centrocurcus urophasianus; hereafter sage-grouse) are the largest grouse species in North America. Sage-grouse occupy 11 western states, extending into North Dakota. North Dakota sage-grouse population is part of the Great Plains Management Zone. Conservation of sage-grouse has been on the forefront of conservation management 1990s. In 2015 the USFWS declared sage-grouse were not warranted for listing based on significant management efforts. Translocations of sage-grouse to prevent populations from extirpation are an example of these efforts.

Translocations have been described as movement and release of animals into a novel environment. There have been more than 7200 sage-grouse …