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Full-Text Articles in Electrical and Computer Engineering
Improved Covariance Model Parameter Estimation Using Rna Thermodynamic Properties, Jennifer A. Smith, Kay C. Wiese
Improved Covariance Model Parameter Estimation Using Rna Thermodynamic Properties, Jennifer A. Smith, Kay C. Wiese
Electrical and Computer Engineering Faculty Publications and Presentations
Covariance models are a powerful description of non-coding RNA (ncRNA) families that can be used to search nucleotide databases for new members of these ncRNA families. Currently, estimation of the parameters of a covariance model (state transition and emission scores) is based only on the observed frequencies of mutations, insertions, and deletions in known ncRNA sequences. For families with very few known members, this can result in rather uninformative models where the consensus sequence has a good score and most deviations from consensus have a fairly uniform poor score. It is proposed here to combine the traditional observed-frequency information with …
Human Image Preference And Document Degradation Models, Chris Hale, Elisa H. Barney Smith
Human Image Preference And Document Degradation Models, Chris Hale, Elisa H. Barney Smith
Electrical and Computer Engineering Faculty Publications and Presentations
Because most degraded documents are created by people, the preferences individuals have in relation to degraded documents are quite important. Their preferences may determine whether or not the documents they created are appropriate for machines. The goal of this study was to find relationships between preference and several parameters of a scanner degradation model. It was found that the difference in binarization threshold and the difference in edge displacement caused by the degradation both had strong linear relationships to preference. The width of the point spread function did not show such a relationship. These relationships were counterintuitive because degraded characters …
Rna Gene Finding With Biased Mutation Operators, Jennifer A. Smith
Rna Gene Finding With Biased Mutation Operators, Jennifer A. Smith
Electrical and Computer Engineering Faculty Publications and Presentations
The use of genetic algorithms for non-coding RNA gene finding has previously been investigated and found to be a potentially viable method for accelerating covariance-model-based database search relative to full dynamic-programming methods. The mutation operators in previous work chose new alignment insertion and deletion locations uniformly over the length of the model consensus sequence. Since the covariance models are estimated from multiple known members of a non-coding RNA family, information is available as to the likelihood of insertions or deletions at the individual model positions. This information is implicit in the state-transition parameters of the estimated covariance models. In the …
Recent Progress In The Development Of Incits W1.1, Appearance-Based Image Quality Standards For Printers, Elisa H. Barney Smith
Recent Progress In The Development Of Incits W1.1, Appearance-Based Image Quality Standards For Printers, Elisa H. Barney Smith
Electrical and Computer Engineering Faculty Publications and Presentations
In September 2000, INCITS W1 (the U.S. representative of ISO/IEC JTC1/SC28, the standardization committee for office equipment) was chartered to develop an appearance-based image quality standard.(J),(2) The resulting W1.1 project is based on a proposal(4) that perceived image quality can be described by a small set of broad-based attributes. There are currently five ad hoc teams, each working towards the development of standards for evaluation of perceptual image quality of color printers for one or more of these image quality attributes. This paper summarizes the work in progress.