Computer Engineering Commons^™

An Analysis Of Project Setup And Organization In Software, Adam Fitzgibbon

Honors Theses

The setup of a software project can greatly influence how efficiently software can be built. In this paper, I will be discussing my experiences with various software projects and their setups. These experiences will be used as a basis to draw conclusions on the strengths and weaknesses of specific project setups in certain situations.

Because of the complexity of building software, there isn’t a project setup that works optimally for solving every type of software-based problem. The best approach is to know what variations would best fit the situation and make design decisions from there.

Mintbase V2.0: A Comprehensive Database For Trna-Derived Fragments That Includes Nuclear And Mitochondrial Fragments From All The Cancer Genome Atlas Projects., Venetia Pliatsika, Phillipe Loher, Rogan Magee, Aristeidis G. Telonis, Eric R. Londin, Megumi Shigematsu, Yohei Kirino, Isidore Rigoutsos

Computational Medicine Center Faculty Papers

MINTbase is a repository that comprises nuclear and mitochondrial tRNA-derived fragments ('tRFs') found in multiple human tissues. The original version of MINTbase comprised tRFs obtained from 768 transcriptomic datasets. We used our deterministic and exhaustive tRF mining pipeline to process all of The Cancer Genome Atlas datasets (TCGA). We identified 23 413 tRFs with abundance of ≥ 1.0 reads-per-million (RPM). To facilitate further studies of tRFs by the community, we just released version 2.0 of MINTbase that contains information about 26 531 distinct human tRFs from 11 719 human datasets as of October 2017. Key new elements include: the ability …