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Electrical and Computer Engineering

University of Kentucky

Blast Interproscan Bioinformatics

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Pathologyxgrid Implementation For The Interproscan Bioinformatics Software, Cody K. Bumgardner Apr 2006

Pathologyxgrid Implementation For The Interproscan Bioinformatics Software, Cody K. Bumgardner

Cody Bumgardner

SoftwareInterProScan is an essential step in the Epichloëfestucae genome project’s pipeline. Complete determination of the genome sequence for Epichloëfestucae, requires substantial programmatic and computing efforts. Due to the running time requirements the computational volume of some of its subtasks exceed the power of a traditional single processor computation and high performance approaches, such as grid computing, are needed.