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Full-Text Articles in Computer Engineering

Coordinated Control And Estimation Of Multiagent Systems With Engineering Applications, Housheng Su, Michael Z.Q. Chen, Qing Hui, Wei Zhang, Fanglai Zhu Dec 2014

Coordinated Control And Estimation Of Multiagent Systems With Engineering Applications, Housheng Su, Michael Z.Q. Chen, Qing Hui, Wei Zhang, Fanglai Zhu

Department of Electrical and Computer Engineering: Faculty Publications

Recently, coordinated control and estimation problems have attracted a great deal of attention in different fields especially in biology, physics, computer science, and control engineering. Coordinated control and estimation problems have prominent characteristics of distributed control, local interaction, and self-organization. Research on multiagent coordinated control and estimation problems not only helps better understand the mechanisms of natural collective phenomena but also benefits the applications of cyberphysical systems.

This special issue focuses on theoretical and technological achievements in cooperative multiagent Systems. It contains twenty-six papers, the contents of which are summarized below.


Stable And Metastable Nanowires Displaying Locally Controllable Properties, Eli A. Sutter, Peter Werner Sutter Nov 2014

Stable And Metastable Nanowires Displaying Locally Controllable Properties, Eli A. Sutter, Peter Werner Sutter

Department of Electrical and Computer Engineering: Faculty Publications

(57) ABSTRACT Vapor-liquid-solid growth of nanowires is tailored to achieve complex one-dimensional material geometries using phase diagrams determined for nanoscale materials. Segmented one-dimensional nanowires having constant composition dis play locally variable electronic band structures that are deter mined by the diameter of the nanowires. The unique electrical and optical properties of the segmented nanowires are exploited to form electronic and optoelectronic devices. Using gold-germanium as a model system, in situ transmis sion electron microscopy establishes, for nanometer-sized Au Ge alloy drops at the tips of Ge nanowires (NWs), the parts of the phase diagram that determine their temperature dependent equilibrium …


Growth Of Graphene Films And Graphene Patterns, Yongfeng Lu, Wei Xiong, Yunshen Zhou Jul 2014

Growth Of Graphene Films And Graphene Patterns, Yongfeng Lu, Wei Xiong, Yunshen Zhou

Department of Electrical and Computer Engineering: Faculty Publications

Large area graphene can be fabricated by depositing carbon and catalytic metal thin film(s) on a substrate, heating the carbon and the catalytic metal, and forming graphene on the substrate. The catalytic metal is evaporated during the heating process. The catalytic metal can be, for example, nickel, cobalt, or iron.


Thickness Determination Of Few-Layer Hexagonal Boron Nitride Films By Scanning Electron Microscopy And Auger Electron Spectroscopy, P. Sutter, E. Sutter Jul 2014

Thickness Determination Of Few-Layer Hexagonal Boron Nitride Films By Scanning Electron Microscopy And Auger Electron Spectroscopy, P. Sutter, E. Sutter

Department of Electrical and Computer Engineering: Faculty Publications

We assess scanning electron microscopy (SEM) and Auger electron spectroscopy (AES) for thickness measurements on few-layer hexagonal boron nitride (h-BN), the layered dielectric of choice for integration with graphene and other two-dimensional materials. Observations on h-BN islands with large, atomically flat terraces show that the secondary electron intensity in SEM reflects monolayer height changes in films up to least 10 atomic layers thickness. From a quantitative analysis of AES data, the energy-dependent electron escape depth in h-BN films is deduced. The results show that AES is suitable for absolute thickness measurements of few-layer h-BN of 1 to 6 layers.


Self-Organizing Microstructures Orientation Control In Femtosecond Laser Patterning On Silicon Surface, Pengjun Liu, Lan Jiang, Jie Hu, Shuai Zhang, Yongfeng Lu Jul 2014

Self-Organizing Microstructures Orientation Control In Femtosecond Laser Patterning On Silicon Surface, Pengjun Liu, Lan Jiang, Jie Hu, Shuai Zhang, Yongfeng Lu

Department of Electrical and Computer Engineering: Faculty Publications

Self-organizing rippled microstructures are induced on silicon surface by linearly polarized femtosecond laser pulses. At a near threshold fluence, it is observed that ripple orientation is co-determined by the laser polarization direction and laser scanning parameters (scanning direction and scanning speed) in surface patterning process. Under fixed laser polarization, the ripple orientation can be controlled to rotate by about 40° through changing laser scanning parameters. In addition, it is also observed that the ripple morphology is sensitive to the laser scanning direction, and it is an optimal choice to obtain ordered ripple structures when the angle between laser scanning and …


Human Brain Networks: Spiking Neuron Models, Multistability, Synchronization, Thermodynamics, Maximum Entropy Production, And Anesthetic Cascade Mechanisms, Wassim H. Haddad, Qing Hui, James M. Bailey Jul 2014

Human Brain Networks: Spiking Neuron Models, Multistability, Synchronization, Thermodynamics, Maximum Entropy Production, And Anesthetic Cascade Mechanisms, Wassim H. Haddad, Qing Hui, James M. Bailey

Department of Electrical and Computer Engineering: Faculty Publications

Advances in neuroscience have been closely linked to mathematical modeling beginning with the integrate-and-fire model of Lapicque and proceeding through the modeling of the action potential by Hodgkin and Huxley to the current era. The fundamental building block of the central nervous system, the neuron, may be thought of as a dynamic element that is “excitable”, and can generate a pulse or spike whenever the electrochemical potential across the cell membrane of the neuron exceeds a threshold. A key application of nonlinear dynamical systems theory to the neurosciences is to study phenomena of the central nervous system that exhibit nearly …


Anisotropy Modulations Of Femtosecond Laser Pulse Induced Periodic Surface Structures On Silicon By Adjusting Double Pulse Delay, Weina Han, Lan Jiang, Xiaowei Li, Qingsong Wang, Hao Li, Yongfeng Lu Jun 2014

Anisotropy Modulations Of Femtosecond Laser Pulse Induced Periodic Surface Structures On Silicon By Adjusting Double Pulse Delay, Weina Han, Lan Jiang, Xiaowei Li, Qingsong Wang, Hao Li, Yongfeng Lu

Department of Electrical and Computer Engineering: Faculty Publications

We demonstrate that the polarization-dependent anisotropy of the laser-induced periodic surface structure (LIPSS) on silicon can be adjusted by designing a femtosecond laser pulse train (800 nm, 50 fs, 1 kHz). By varying the pulse delay from 100 to 1600 fs within a double pulse train to reduce the deposited pulse energy, which weakens the directional surface plasmon polarition (SPP)-laser energy coupling based on the initial formed ripple structure, the polarization-dependent geometrical morphology of the LIPSS evolves from a nearly isotropic circular shape to a somewhat elongated elliptical shape. Meanwhile, the controllable anisotropy of the two-dimensional scanned-line widths with different …


Processing Of Monolayer Materals Vlanterfacial Reactions, Peter Werner Sutter, Eli Anguelova Sutter May 2014

Processing Of Monolayer Materals Vlanterfacial Reactions, Peter Werner Sutter, Eli Anguelova Sutter

Department of Electrical and Computer Engineering: Faculty Publications

A method of forming and processing of graphene is disclosed based on exposure and selective intercalation of the partially graphene-covered metal Substrate with atomic or molecular intercalation species such as oxygen (O) and nitrogen oxide (NO). The process of intercalation lifts the strong metal carbon coupling and restores the characteristic Dirac behav ior of isolated monolayer graphene. The interface of graphene with metals or metal-decorated substrates also provides for controlled chemical reactions based on novel functionality of the confined space between a metal Surface and a graphene sheet.


Polarization-Coupled Ferroelectric Unpolarunction Memory And Energy Storage Device, Mathias M. Schubert, Tino Hofmann, Venkata Rao Voora Apr 2014

Polarization-Coupled Ferroelectric Unpolarunction Memory And Energy Storage Device, Mathias M. Schubert, Tino Hofmann, Venkata Rao Voora

Department of Electrical and Computer Engineering: Faculty Publications

A memory device is provided. The memory device includes a plurality of memory cells and a controller to write data to and read data from the memory cells. Each memory cell includes a first semiconductor material having a spontaneous polarization, a resistive ferroelectric material having a switchable spontaneous polarization, and a second semiconductor material having a spontaneous polarization, the resistive ferroelectric material being positioned between and in contact with the first and second semiconductor materials. The memory device can be configured to store energy that can be released by applying a voltage pulse to the memory device.


Flame-Enhanced Laser-Induced Breakdown Spectroscopy, L. Liu, S. Li, X. N. He, X. Huang, C. F. Zhang, L. S. Fan, M. X. Wang, Y. S. Zhou, K. Chen, L. Jiang, J. F. Silvain, Yongfeng Lu Apr 2014

Flame-Enhanced Laser-Induced Breakdown Spectroscopy, L. Liu, S. Li, X. N. He, X. Huang, C. F. Zhang, L. S. Fan, M. X. Wang, Y. S. Zhou, K. Chen, L. Jiang, J. F. Silvain, Yongfeng Lu

Department of Electrical and Computer Engineering: Faculty Publications

Flame-enhanced laser-induced breakdown spectroscopy (LIBS) was investigated to improve the sensitivity of LIBS. It was realized by generating laser-induced plasmas in the blue outer envelope of a neutral oxy-acetylene flame. Fast imaging and temporally resolved spectroscopy of the plasmas were carried out. Enhanced intensity of up to 4 times and narrowed full width at half maximum (FWHM) down to 60% for emission lines were observed. Electron temperatures and densities were calculated to investigate the flame effects on plasma evolution. These calculated electron temperatures and densities showed that high-temperature and low-density plasmas were achieved before 4 μs in the flame environment, …


Relationship Between Photofixed Condensate, Effluent And Bulk Composition Of Several Common Rtv Materials, Fen Zhou Hanrahan, Natale J. Ianno Apr 2014

Relationship Between Photofixed Condensate, Effluent And Bulk Composition Of Several Common Rtv Materials, Fen Zhou Hanrahan, Natale J. Ianno

Department of Electrical and Computer Engineering: Faculty Publications

Raman spectroscopy and Fourier Transform Infrared (FTIR) spectroscopy are employed to analyze the bulk compositions of five kinds of Room Temperature Vulcanized (RTV) silicones (CV2568, RTV566, DC93-500, SCV2590 and SCV2590-2) that are commonly employed in orbiting spacecraft. It is found that polydimethylsiloxane (PDMS), silicon dioxide, Tetra-n-propylsilicate (NPS), silicic acid, tetraethyl orthosilicate, and trimethylsilanol are contained in all of them. The outgassing products from those silicones are characterized by FTIR. By comparing the position of the peaks, it is found that the outgassing products of each material are PDMS and NPS which are consistent with the compositions of samples determined with …


Contrast Enhancement Using Silica Microspheres In Coherent Anti-Stokes Raman Spectroscopic Imaging, X. Huang, X. N. He, W. Xiong, Y. Gao, L. J. Jiang, Li Liu, Y. S. Zhou, L. Jiang, J. F. Silvain, Yongfeng Lu Feb 2014

Contrast Enhancement Using Silica Microspheres In Coherent Anti-Stokes Raman Spectroscopic Imaging, X. Huang, X. N. He, W. Xiong, Y. Gao, L. J. Jiang, Li Liu, Y. S. Zhou, L. Jiang, J. F. Silvain, Yongfeng Lu

Department of Electrical and Computer Engineering: Faculty Publications

Coherent anti-Stokes Raman scattering (CARS) microscopy is a powerful imaging technique that can provide chemical information of organic and nonorganic materials through vibrational spectroscopy. However, its contrast is not sufficient for monitoring thin film materials. In this study, silica microspheres were employed for enhancing the signal contrast in CARS imaging. One layer of optically transparent silica microspheres was self-assembled onto polymer grating samples to enhance the CARS signals. The highest contrast enhancement factor of 12.5 was achieved using 6.1-μm-diameter microspheres. Finite-difference timedomain method (FDTD) simulation was conducted to simulate the contrast enhancement with silica microspheres of different diameters.


An Effective Heat Propagation Path-Based Online Adaptive Thermal Model For Igbt Modules, Ze Wang, Wei Qiao, Bo Tian, Liyan Qu Jan 2014

An Effective Heat Propagation Path-Based Online Adaptive Thermal Model For Igbt Modules, Ze Wang, Wei Qiao, Bo Tian, Liyan Qu

Department of Electrical and Computer Engineering: Faculty Publications

The information of junction temperature is crucial for operation management of IGBT modules. In practice, junction temperature is typically estimated by using an electrothermal model. IGBT modules are subject to various aging processes during operation, some of which, e.g. substrate solder crack, changes the thermal impedance of an IGBT module. However, in the literature little work has included the aging effects into online thermal behavior modeling of IGBT modules. This paper proposes an Effective Heat Propagation Path (EHPP)-based online adaptive thermal model for IGBT modules, where the EHPP is proposed to quantify the impact of substrate solder cracks on the …


An Interconnection And Damping Assignment Passivity-Based Controller For A Dc–Dc Boost Converter With A Constant Power Load, Jianwu Zeng, Zhe Zhang, Wei Qiao Jan 2014

An Interconnection And Damping Assignment Passivity-Based Controller For A Dc–Dc Boost Converter With A Constant Power Load, Jianwu Zeng, Zhe Zhang, Wei Qiao

Department of Electrical and Computer Engineering: Faculty Publications

This paper proposes an adaptive interconnection and damping assignment (IDA) passivity-based controller (PBC) with a complementary proportional integral (PI) controller for dc–dc boost converters with constant power loads (CPLs). The plant is modeled as a port-controlled Hamiltonian system (PCHS). A virtual circuit that interprets the parameters of the PCHS is then derived to determine the parameters of the IDA-PBC for the system to work in the underdamping, critical-damping, and overdamping modes. Moreover, a complementary PI controller is designed to eliminate the steady-state output voltage error of the IDA-PBC caused by the load variation. Simulation studies are carried out inMATLAB/Simulink to …


An Isolated Multiport Dc–Dc Converter For Simultaneous Power Management Of Multiple Different Renewable Energy Sources, Jianwu Zeng, Wei Qiao, Liyan Qu, Yanping Jiao Jan 2014

An Isolated Multiport Dc–Dc Converter For Simultaneous Power Management Of Multiple Different Renewable Energy Sources, Jianwu Zeng, Wei Qiao, Liyan Qu, Yanping Jiao

Department of Electrical and Computer Engineering: Faculty Publications

This paper proposes a new isolated multiport dc–dc converter for simultaneous power management of multiple renewable energy sources, which can be of different types and capacities. The proposed dc–dc converter only uses one controllable switch in each port to which a source is connected. Therefore, it has the advantages of simple topology and minimum number of power switches. A general topology of the proposed converter is first introduced. Its principle and operation are then analyzed. The proposed converter is applied for simultaneous maximum power point tracking (MPPT) control of a wind/solar hybrid generation system consisting of one wind turbine generator …


Fiber-Optic Temperature Sensor Using A Fabry–Pérot Cavity Filled With Gas Of Variable Pressure, Yujie Lu, Ming Han, Jiajun Tian Jan 2014

Fiber-Optic Temperature Sensor Using A Fabry–Pérot Cavity Filled With Gas Of Variable Pressure, Yujie Lu, Ming Han, Jiajun Tian

Department of Electrical and Computer Engineering: Faculty Publications

We report a high-temperature fiber-optic sensor based on measuring the spectral fringes of a Fabry–Pérot (FP) cavity on a microstructure fiber (MF) when the gas pressure in the cavity is varied through the holes in the MF. Theoretical analysis shows that the absolute temperature can be deduced from the slope of the spectral shift versus pressure curve, which requires no calibration and is insensitive to the FP cavity length variations. For demonstration, we fabricated a miniature sensor whose FP cavity is formed by sandwiching a fuse-silica tube between a side-hole MF and a solid-core fiber. Using the holes in the …


Modeling Molecular Communications At Nano-Scale With Applications In Medicine And Microbiology, Tadeusz A. Wysocki Jan 2014

Modeling Molecular Communications At Nano-Scale With Applications In Medicine And Microbiology, Tadeusz A. Wysocki

Department of Electrical and Computer Engineering: Faculty Publications

No abstract provided.


Evaluation Of Ann Estimation-Based Mppt Control For A Dfig Wind Turbine, Chun Wei, Liyan Qu, Wei Qiao Jan 2014

Evaluation Of Ann Estimation-Based Mppt Control For A Dfig Wind Turbine, Chun Wei, Liyan Qu, Wei Qiao

Department of Electrical and Computer Engineering: Faculty Publications

This paper proposes an artificial neuronal network (ANN) estimation-based wind speed sensolress MPPT algorithm for wind turbines equipped with doubly-fed induction generators (DFIG). The ANN is designed to produce the optimal control signal for the DFIG power or speed controller. The optimal parameters of the ANN are determined by using a particle swarm optimization (PSO) algorithm. A 3.6 MW DFIG wind turbine is simulated in PSCAD to evaluate and compare the proposed MPPT method with the traditional tip speed ratio (TSR) and turbine power profile-based MPPT methods in both the speed control and power control modes in variable wind speed …


An Isolated Multiport Bidirectional Dc-Dc Converter For Pv-Battery-Dc Microgrid Applications, Jianwu Zeng, Wei Qiao, Liyan Qu Jan 2014

An Isolated Multiport Bidirectional Dc-Dc Converter For Pv-Battery-Dc Microgrid Applications, Jianwu Zeng, Wei Qiao, Liyan Qu

Department of Electrical and Computer Engineering: Faculty Publications

This paper proposes a new isolated, multiport, bidirectional DC-DC converter with the least number of switches for photovoltaic (PV)-battery-DC microgrid applications. The proposed converter is able to perform the maximum power point tracking (MPPT) control for the PV system when solar energy is available as well as control the charge and discharge of the battery with the PV system and the DC microgrid. Simulation and experimental studies are carried out and validate the proposed converter for simultaneous power management of a PV-battery system connected to a DC microgrid.


A Low-Power Compact Nqr Based Explosive Detection System, Xinwang Zhang, Nathan Schemm, Sina Balkır, Michael W. Hoffman Jan 2014

A Low-Power Compact Nqr Based Explosive Detection System, Xinwang Zhang, Nathan Schemm, Sina Balkır, Michael W. Hoffman

Department of Electrical and Computer Engineering: Faculty Publications

Nuclear quadruple resonance (NQR) has been studied for explosive detection for years. Some prototype NQR-based detection systems have been reported, but were all designed from the laboratory perspective, with bulky sizes and high power consumption. To achieve a portable NQR-based detection system for field applications, a low-power compact system utilizing state-of-the-art semiconductor technologies is presented in this paper. Several novel circuits for the key modules are proposed, including a Class-D type power amplifier, a power multiplexing and matching network, a customized IC with integrated analog signal processing chain, and a microcontroller-based logic control unit. An advanced digital signal processor platform …


A Flux Vector-Based Discrete-Time Direct Torque Control For Salient-Pole Permanent-Magnet Synchronous Generators, Zhe Zhang, Yue Zhao, Jianwu Zeng, Wei Qiao Jan 2014

A Flux Vector-Based Discrete-Time Direct Torque Control For Salient-Pole Permanent-Magnet Synchronous Generators, Zhe Zhang, Yue Zhao, Jianwu Zeng, Wei Qiao

Department of Electrical and Computer Engineering: Faculty Publications

This paper proposes a flux vector-based discretetime direct torque control (DTC) scheme for salient-pole permanent-magnet synchronous generators (PMSGs) used in the variable-speed, direct-drive wind energy conversion systems (WECSs). The discrete-time control law is derived from the perspective of flux space vectors and load angle with the torque and stator flux information only. The saliency of the PMSG is eliminated by the active flux concept. Compared with the existing space vector modulation (SVM)-based DTCs, the proposed scheme removes the use of PI regulators and is less dependent on the machine parameters, e.g., stator inductances and permanent-magnet flux linkage, while maintaining the …


A Sliding-Mode Duty-Ratio Controller For Dc/Dc Buck Converters With Constant Power Loads, Yue Zhao, Wei Qiao, Daihyun Ha Jan 2014

A Sliding-Mode Duty-Ratio Controller For Dc/Dc Buck Converters With Constant Power Loads, Yue Zhao, Wei Qiao, Daihyun Ha

Department of Electrical and Computer Engineering: Faculty Publications

Incorporating a medium-voltage dc (MVDC) integrated power system is a goal for future surface combatants and submarines. In an MVDC shipboard power system, dc/dc converters are commonly employed to supply constant power to electric loads. These constant power loads have a characteristic of negative incremental impedance, which may cause system instability during disturbances if the system is not properly controlled. This paper proposes a sliding-mode duty-ratio controller (SMDC) for dc/dc buck converters with constant power loads. The proposed SMDC is able to stabilize the dc power systems over the entire operating range in the presence of significant variations in the …


Improved Rotor Position And Speed Estimators For Sensorless Control Of Interior Permanent-Magnet Synchronous Machines, Yue Zhao, Wei Qiao, Long Wu Jan 2014

Improved Rotor Position And Speed Estimators For Sensorless Control Of Interior Permanent-Magnet Synchronous Machines, Yue Zhao, Wei Qiao, Long Wu

Department of Electrical and Computer Engineering: Faculty Publications

Model-based rotor position/speed estimators are commonly used for sensorless control of interior permanentmagnet synchronous machines (IPMSMs) operating in the medium- and high-speed regions. A rotor position/speed estimation scheme usually contains three major parts: 1) a state observer; 2) a position estimator; and 3) a speed estimator. This paper proposes a sliding-mode observer (SMO) as the state observer to estimate the position-related system states, which are the extended electromotive force components in this paper. Then, two major contributions are made to achieve improved position and speed estimation. First, the rotor speed is estimated independently using a model reference adaptive system (MRAS)-based …


A Comparison Between Uwb And Tdoa Systems For Smart Space Localization, Lianlin Zhao, Eric T. Psota, Lance C. Pérez Jan 2014

A Comparison Between Uwb And Tdoa Systems For Smart Space Localization, Lianlin Zhao, Eric T. Psota, Lance C. Pérez

Department of Electrical and Computer Engineering: Faculty Publications

A comparison between two different systems for smart space localization is presented. A smart space implemented at the University of Nebraska-Lincoln was designed for automated and intelligent assistance for elderly and disabled people, and also for astronauts in space. Localization is a critical component of the smart space since it provides the system with the movement patterns and location of its inhabitants. Two systems have been deployed and evaluated for the purpose of localizing people in the smart space: the Ubisense ultra-wide band (UWB) system and the Cricket indoor localization system. Both systems support three-dimensional localization within the smart space. …


Thyristor-Controlled Switch Capacitor Placement In Large-Scale Power Systems Via Mixed Integer Linear Programming And Taylor Series Expansion, Omid Ziaee, F. Fred Choobineh Jan 2014

Thyristor-Controlled Switch Capacitor Placement In Large-Scale Power Systems Via Mixed Integer Linear Programming And Taylor Series Expansion, Omid Ziaee, F. Fred Choobineh

Department of Electrical and Computer Engineering: Faculty Publications

Allocation of flexible alternating current transmission system (FACTS) devices to an electric power transmission network may be formulated as a nonlinear mathematical program. Solving such a nonlinear program for a large transmission network is computationally very expensive, and obtaining the optimal solution may be impossible. We present a Taylor series expansion approximation of the nonlinearities of the problem and propose a mixed integer linear program (MILP) for finding the optimum location and proper settings of a Thyristor-Controlled Series Capacitor (TCSC) in an electric power network. The objective of this problem is to minimize total generation cost based on the DC …


Tunable Plasmonic And Hyperbolic Metamaterials Based On Enhanced Nonlinear Response, Christos Argyropoulos, Francesco Monticone, Nasim Mohammadi Estakhri, Andrea Alu Jan 2014

Tunable Plasmonic And Hyperbolic Metamaterials Based On Enhanced Nonlinear Response, Christos Argyropoulos, Francesco Monticone, Nasim Mohammadi Estakhri, Andrea Alu

Department of Electrical and Computer Engineering: Faculty Publications

We present here tunable and reconfigurable designs of linear and nonlinear plasmonic and hyperbolic metamaterials. Rich scattering features of multilayered composite nanoparticles are demonstrated, which include complex and exotic scattering signatures combining multiple dipolar Fano resonances and electromagnetic induced transparency (EIT) features. These dipoledipole multi-Fano scattering responses can be further tuned through altering the plasmonic properties of the concentric layers or the permittivity of the core, for instance, by the presence of nonlinearities. Strong third-order nonlinear effects, such as optical bistability, may also be induced in the scattering response of nonlinear nanoparticles due to the highly enhanced and confined fields …


Bayesian Network Prior: Network Analysis Of Biological Data Using External Knowledge, Senol Isci, Haluk Dogan, Cengizhan Ozturk, Hasan H. Otu Jan 2014

Bayesian Network Prior: Network Analysis Of Biological Data Using External Knowledge, Senol Isci, Haluk Dogan, Cengizhan Ozturk, Hasan H. Otu

Department of Electrical and Computer Engineering: Faculty Publications

Motivation: Reverse engineering GI networks from experimental data is a challenging task due to the complex nature of the networks and the noise inherent in the data. One way to overcome these hurdles would be incorporating the vast amounts of external biological knowledge when building interaction networks. We propose a framework where GI networks are learned from experimental data using Bayesian networks (BNs) and the incorporation of external knowledge is also done via a BN that we call Bayesian Network Prior (BNP). BNP depicts the relation between various evidence types that contribute to the event ‘gene interaction’ and is used …


Whole Genome Sequence Of A Turkish Individual, Haluk Dogan, Handan Can, Hasan H. Otu Jan 2014

Whole Genome Sequence Of A Turkish Individual, Haluk Dogan, Handan Can, Hasan H. Otu

Department of Electrical and Computer Engineering: Faculty Publications

Although whole human genome sequencing can be done with readily available technical and financial resources, the need for detailed analyses of genomes of certain populations still exists. Here we present, for the first time, sequencing and analysis of a Turkish human genome. We have performed 35x coverage using paired-end sequencing, where over 95% of sequencing reads are mapped to the reference genome covering more than 99% of the bases. The assembly of unmapped reads rendered 11,654 contigs, 2,168 of which did not reveal any homology to known sequences, resulting in,1 Mbp of unmapped sequence. Single nucleotide polymorphism (SNP) discovery resulted …


Terahertz-Infrared Ellipsometer System, And Method Of Use, Craig H. Herzinger, Mathias M. Schubert, Tino Hofmann, Martin M. Liphardt, John A. Woollam Jan 2014

Terahertz-Infrared Ellipsometer System, And Method Of Use, Craig H. Herzinger, Mathias M. Schubert, Tino Hofmann, Martin M. Liphardt, John A. Woollam

Department of Electrical and Computer Engineering: Faculty Publications

The present invention relates to ellipsometer and polarimeter systems, and more particularly is an ellipsometer or polarimeter or the like system which operates in a frequency range between 300 GHz or lower and extending to higher than at least 1 Tera-hertz (THz), and preferably through the Infra-red (IR) range up Sh and his th. 100 THz, including: a Source Such as a backward wave oscillator, a Smith-Purcell cell; a free electron laser, or an FTIR source and a solid state device; and a detector Such as a Golay cell; abolometer or a solid state detector: and preferably including a polarization …


Element Dependence Of Enhancement In Optics Emission From Laser-Induced Plasma Under Spatial Confinement, Changmao Li, Lianbo Guo, Xiangnan He, Zhongqi Hao, Xiangyou Li, Meng Shen, Xiaoyan Zeng, Yongfeng Lu Jan 2014

Element Dependence Of Enhancement In Optics Emission From Laser-Induced Plasma Under Spatial Confinement, Changmao Li, Lianbo Guo, Xiangnan He, Zhongqi Hao, Xiangyou Li, Meng Shen, Xiaoyan Zeng, Yongfeng Lu

Department of Electrical and Computer Engineering: Faculty Publications

In this study, the element dependence of spatial confinement effects in LIBS has been studied. Hemispheric cavities were used to confine laser-induced plasmas from aluminum samples with other trace elements. The enhancement factors were found to be dependent on the elements. Equations describing the element dependent enhancement factors were successfully deduced from the local thermodynamic equilibrium conditions, which have also been verified by the experimental results. Research results show that enhancement factors in LIBS with spatial confinement depend on the temperature, electron density, and compression ratio of plasmas, and vary with elements and atomic/ionic emission lines selected. Generally, emission lines …