Computational Engineering Commons^™

Detecting Pathobiomes Using Machine Learning, Valerie Jackson, Valerie Jackson

Industrial Engineering Undergraduate Honors Theses

Machine learning is a field with high growth potential due to the overall continuous progressions, developments, advancements, and improvements caused by the way it is used to help interpret and use large amounts of data [1]. One type of data that can be collected and analyzed by these machine learning models is data that is associated with DNA and information that the DNA gives. The research will be focusing specifically on using machine learning technology to detect pathobiomes indicative of salmonella pork. The pathobiome associated with salmonella is very similar to others, and this causes a problem for classification/detection with …

Development Of A Computational Model To Investigate Pathways And The Effects Of Treatment In Fanconi Anemia, Sabrina Kellett

Biological Sciences Undergraduate Honors Theses

Fanconi Anemia (FA) is a rare type of anemia that is not easily studied and can have very detrimental effects. This disease compromises the bone marrow, resulting in decreased hemopoiesis. Symptoms of FA also include abnormalities in the brain and spinal cord, incorrect formation of the kidneys, abnormal formation of the heart and lungs, and a dramatically increased risk of developing cancer. FA can be caused by various mutations in any of the 22 genes that encode for proteins involved in what is called the FA DNA repair pathway. In healthy individuals, this pathway specifically repairs interstrand cross-links (ICLs) recognized …

Preserving User Data Privacy Through The Development Of An Android Solid Library, Alexandria Lim

Computer Science and Computer Engineering Undergraduate Honors Theses

In today’s world where any and all activity on the internet produces data, user data privacy and autonomy are not prioritized. Companies called data brokers are able to gather data elements of personal information numbering in the billions. This data can be anything from purchase history, credit card history, downloaded applications, and service subscriptions. This information can be analyzed and inferences can be drawn from analysis, categorizing people into groups that range in sensitivity — from hobbies to race and income classes. Not only do these data brokers constantly overlook data privacy, this mass amount of data makes them extremely …

Smart-Insect Monitoring System Integration And Interaction Via Ai Cloud Deployment And Gpt, Ahmed Moustafa

Computer Science and Computer Engineering Undergraduate Honors Theses

The Insect Detection Server was developed to explore the deployment and integration of an Artificial Intelligence model for Computer Vision in the context of insect detection. The model was developed to accurately identify insects from images taken by camera systems installed on farms. The goal is to integrate the model into an easily accessible, cloud-based application that allows farmers to analyze automatically uploaded images containing groups of insects found on their farms. The application returns the bounding boxes and the detected classes of insects whenever an image is captured on-site, enabling farmers to take appropriate actions to address the issue …

Achieving Causal Fairness In Recommendation, Wen Huang

Graduate Theses and Dissertations

Recommender systems provide personalized services for users seeking information and play an increasingly important role in online applications. While most research papers focus on inventing machine learning algorithms to fit user behavior data and maximizing predictive performance in recommendation, it is also very important to develop fairness-aware machine learning algorithms such that the decisions made by them are not only accurate but also meet desired fairness requirements. In personalized recommendation, although there are many works focusing on fairness and discrimination, how to achieve user-side fairness in bandit recommendation from a causal perspective still remains a challenging task. Besides, the deployed …

Using Bluetooth Low Energy And E-Ink Displays For Inventory Tracking, David Whelan

Computer Science and Computer Engineering Undergraduate Honors Theses

The combination of Bluetooth Low energy and E-Ink displays allow for a low energy wire-less display. The application of this technology is far reaching especially given how the Bluetooth Low Energy specification can be extended. This paper proposes an extension to this specification specifically for inventory tracking. This extension combined with the low energy E-Ink display results in a smart label that can keep track of additional meta data and inventory counts for physical inventory. This label helps track the physical inventory and can help mitigate any errors in the logical organization of inventory.

Influence Of Extracellular Matrix Stiffness And Topography On Neuronal Cell Behavior And Neurite Outgrowth, Mohan Yasodharababu

Graduate Theses and Dissertations

The focus of regeneration therapy for traumatic brain injuries and Alzheimer's disease is on the promotion and growth of neuronal cells. In vitro research attempts to improve this by modifying the stiffness and topography of the extracellular matrix (ECM). However, the limitations of in vitro experiments make it difficult to control the individual factors influencing neuronal cell growth. A computational model can be used to decouple individual factors and study them individually to gain a better understanding of the mechanics between the neuronal cell and ECM, which will aid in the design of in vitro experimental studies.

This study develops …

Expanding Image Datasets For Deep Learning By Evaluating Independence Through Coefficient Correlation And Mean-Squared Error, Ayman Yousef

Biomedical Engineering Undergraduate Honors Theses

With deep learning being leveraged more regularly in the field of image classification, particularly in medical imaging, network optimizations have become a field in and of itself. With open source, comprehensive medical image datasets few and far, computational dataset expansion has become a useful tool for researchers without the ability to further manually collect data. However, with the rich amount of data that imaging modalities like multi-photon microscopy collect at a time, there is potential to expand datasets through proper utilization of this data that often time goes unused. Previous deep learning studies have shown that improper expansion can conflate …

Quantifying The Benefits Of A Collaborative Supply Chain Network Using A Discrete-Time Vehicle Routing Model, Matthew Walters

Industrial Engineering Undergraduate Honors Theses

The transportation industry contributed around one trillion dollars to the economy in 2016 accounting for 8.9% percent of the GDP. In 2017, it was responsible for 1.5 billion tons of CO₂ emissions. With the American Trucking agency predicting a 35% growth in the trucking industry between 2016 and 2027, there are rising concerns about the impact the trucking industry will have on the economy and the environment. The trucking industry is also very inefficient with many trucks driving with empty loads or with less than full capacity loads. There is potential to save billions of dollars and cut back …

Stock Price Using Domain Specific Lexicons, Zane Turner

Computer Science and Computer Engineering Undergraduate Honors Theses

Sentiment analysis is a broad and expanding field that aims to extract and classifying opinions from textual data. Lexicon-based approaches are based on using a sentiment lexicon, a list of words each mapped to a sentiment score, to rate the sentiment of a text chunk. Our work focuses on predicting stock price change using a sentiment lexicon built from financial conference call logs. We introduce a method to generate a sentiment lexicon based upon an existing probabilistic approach. By using a domain-specific lexicon, we outperform traditional techniques and demonstrate that domain-specific sentiment lexicons provide higher accuracy than generic sentiment lexicons …

Fingerprint Database Privacy Guard: An Open-Source System That Secures Fingerprints With Locality Sensitive Hashing Algorithms, Enrique Sanchez

Computer Science and Computer Engineering Undergraduate Honors Theses

Fingerprint identification is one of the most accurate sources of identification, yet it is not widely used in public facilities for security concerns. Moreover, the cost of fingerprint system is inaccessible for small-budget business because of their high cost. Therefore, this study created an open-source solution to secure fingerprint samples in the database while using low-cost hardware components. Locality Sensitive Hashing Algorithms such as ORB and Image hash were compared in this study as a potential alternative to SURF. To test the design, fifteen samples were collected and stored in a database without verifying the quality of the samples. Then, …

A Scalable, Chunk-Based Slicer For Cooperative 3d Printing, Jace J. Mcpherson

Computer Science and Computer Engineering Undergraduate Honors Theses

Cooperative 3D printing is an emerging technology that aims to increase the 3D printing speed and to overcome the size limit of the printable object by having multiple mobile 3D printers (printhead-carrying mobile robots) work together on a single print job on a factory floor. It differs from traditional layer-by-layer 3D printing due to requiring multiple mobile printers to work simultaneously without interfering with each other. Therefore, a new approach for slicing a digital model and generating commands for the mobile printers is needed, which has not been discussed in literature before. We propose a chunk-by-chunk based slicer that divides …

The 3d Abstract Tile Assembly Model Is Intrinsically Universal, Aaron Koch, Daniel Hader, Matthew J. Patitz

Computer Science and Computer Engineering Undergraduate Honors Theses

In this paper, we prove that the three-dimensional abstract Tile Assembly Model (3DaTAM) is intrinsically universal. This means that there is a universal tile set in the 3DaTAM which can be used to simulate any 3DaTAM system. This result adds to a body of work on the intrinsic universality of models of self-assembly, and is specifically motivated by a result in FOCS 2016 showing that any intrinsically universal tile set for the 2DaTAM requires nondeterminism (i.e. undirectedness) even when simulating directed systems. To prove our result we have not only designed, but also fully implemented what we believe to be …

Phase Field Model Of Thermally Induced Phase Separation (Tips) For The Formation Of Porous Polymer Membranes, Ashley Green, Aria Green

Mechanical Engineering Undergraduate Honors Theses

Most membrane research and development has been done through experimental work, which can be costly and time consuming. An accurate computational model would greatly reduce the need for these experiments. The focus of the research presented in this paper is to create an accurate computational model for membrane formation using thermally induced phase separation (TIPS). A phase field model is employed to create this model including the Cahn Hilliard Equation and Flory Huggins Theory. This model produced computational results that correspond well with theoretical and experimental results. The model was then adapted to correspond to the PVDF/DPC polymer-solvent system by …

Simulating Foodborne Pathogens In Poultry Production And Processing To Defend Against Intentional Contamination, Silas B. Lankford

Computer Science and Computer Engineering Undergraduate Honors Theses

There is a lack of data in recent history of food terrorism attacks, and as such, it is difficult to predict its impact. The food supply industry is one of the most vulnerable industries for terrorist threats while the poultry industry is one of the largest food industries in the United States. A small food terrorism attack against just a single poultry processing center has the potential to affect a much larger population than its immediate consumers. In this work, the spread of foodborne pathogens is simulated in a poultry production and processing system to defend against intentional contamination. An …

Detection Of Leukocytes Stained With Acridine Orange Using Unique Spectral Features Acquired From An Image-Based Spectrometer, Courtney J. Hunter

Biomedical Engineering Undergraduate Honors Theses

A leukocyte differential count can be used to diagnosis a myriad blood disorders, such as infections, allergies, and efficacy of disease treatments. In recent years, attention has been focused on developing point-of-care (POC) systems to provide this test in global health settings. Acridine orange (AO) is an amphipathic, vital dye that intercalates leukocyte nucleic acids and acidic vesicles. It has been utilized by POC systems to identify the three main leukocyte subtypes: granulocytes, monocytes, and lymphocytes. Subtypes of leukocytes can be characterized using a fluorescence microscope, where the AO has a 450 nm excitation wavelength and has two peak emission …

Generation And Analysis Of A Social Network: Hamlet, Preston Evans

Computer Science and Computer Engineering Undergraduate Honors Theses

This paper examines the generation and analysis of a social network produced from Shakespeare’s play Hamlet. An XML file of Hamlet was parsed to extract the characters within the play and also identify when the characters appeared within the same scene. After parsing the speakers and the connections between characters, a network graph was generated that displayed all the characters in Hamlet, represented by nodes, and edges that represented the connections between characters as measured by their scene co-appearance. The results of the network graph were then compared to a published social network for Hamlet created by hand. The two …

Droplet Generation At Megahertz Frequencies, John C. Miers

Mechanical Engineering Undergraduate Honors Theses

Droplet formation has been a fascinating subject to scientists for centuries due to its natural beauty and importance to both scientific and industrial applications, such as inkjet printing, reagent deposition, and spray cooling. However, the droplet generation frequency of common drop-on-demand jetting techniques is mostly limited to ~10 kHz. This paper presents an investigation of the possibility of jetting at megahertz frequencies in order to boost the productivity of drop-on-demand material deposition by ~100 times. The focus of this paper is to understand the limitations of generating droplets at a megahertz frequency and to explore possible solutions for overcoming these …

Optical Analysis And Fabrication Of Micro And Nanoscale Plasmonically Enhanced Devices, Avery M. Hill

Mechanical Engineering Undergraduate Honors Theses

Plasmonic nanostructures have been shown to act as optical antennas that enhance optical devices due to their ability to focus light below the diffraction limit of light and enhance the intensity of the incident light. This study focuses on computational electromagnetic (CEM) analysis of two devices: 1) GaAs photodetectors with Au interdigital electrodes and 2) Au thin-film microstructures. Experiments showed that the photoresponse of the interdigital photodetectors depend greatly on the electrode gap and the polarization of the incident light. Smaller electrode gap and transverse polarization give rise to a larger photoresponse. It was also shown that the response from …

Optical Analysis And Fabrication Of Micro And Nanoscale Plasmonically Enhanced Devices, Avery M. Hill

Physics Undergraduate Honors Theses

Plasmonic nanostructures have been shown to act as optical antennas that enhance optical devices due to their ability to focus light below the diffraction limit of light and enhance the intensity of the incident light. This study focuses on computational electromagnetic (CEM) analysis of two devices: 1) GaAs photodetectors with Au interdigital electrodes and 2) Au thin-film microstructures. Experiments showed that the photoresponse of the interdigital photodetectors depend greatly on the electrode gap and the polarization of the incident light. Smaller electrode gap and transverse polarization give rise to a larger photoresponse. It was also shown that the response from …