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Full-Text Articles in Bioimaging and Biomedical Optics

Artificial Image Objects For Classification Of Breast Cancer Biomarkers With Transcriptome Sequencing Data And Convolutional Neural Network Algorithms, Xiangning Chen, Daniel G. Chen, Zhongming Zhao, Justin M. Balko, Jingchun Chen Oct 2021

Artificial Image Objects For Classification Of Breast Cancer Biomarkers With Transcriptome Sequencing Data And Convolutional Neural Network Algorithms, Xiangning Chen, Daniel G. Chen, Zhongming Zhao, Justin M. Balko, Jingchun Chen

School of Medicine Faculty Publications

Background: Transcriptome sequencing has been broadly available in clinical studies. However, it remains a challenge to utilize these data effectively for clinical applications due to the high dimension of the data and the highly correlated expression between individual genes. Methods: We proposed a method to transform RNA sequencing data into artificial image objects (AIOs) and applied convolutional neural network (CNN) algorithms to classify these AIOs. With the AIO technique, we considered each gene as a pixel in an image and its expression level as pixel intensity. Using the GSE96058 (n = 2976), GSE81538 (n = 405), and GSE163882 (n = …


A Brief Bibliometric Survey Of Explainable Ai In Medical Field, Nilkanth Mukund Deshpande, Shilpa Shailesh Gite Apr 2021

A Brief Bibliometric Survey Of Explainable Ai In Medical Field, Nilkanth Mukund Deshpande, Shilpa Shailesh Gite

Library Philosophy and Practice (e-journal)

Background: This study aims to analyze the work done in the field of explainability related to artificial intelligence, especially in the medical field from 2004 onwards using the bibliometric methods.

Methods: different articles based on the topic leukemia detection were retrieved using one of the most popular database- Scopus. The articles are considered from 2004 onwards. Scopus analyzer is used for different types of analysis including documents by year, source, county and so on. There are other different analysis tools such as VOSviewer Version 1.6.15. This is used for the analysis of different units such as co-authorship, co-occurrences, citation analysis …


Least Squares Support Vector Machine Based Classification Of Abnormalities In Brain Mr Images, S. Thamarai Selvi, D. Selvathi, R. Ramkumar, Henry Selvaraj Mar 2006

Least Squares Support Vector Machine Based Classification Of Abnormalities In Brain Mr Images, S. Thamarai Selvi, D. Selvathi, R. Ramkumar, Henry Selvaraj

Electrical & Computer Engineering Faculty Research

The manual interpretation of MRI slices based on visual examination by radiologist/physician may lead to missing diagnosis when a large number of MRIs are analyzed. To avoid the human error, an automated intelligent classification system is proposed. This research paper proposes an intelligent classification technique to the problem of classifying four types of brain abnormalities viz. Metastases, Meningiomas, Gliomas, and Astrocytomas. The abnormalities are classified based on Two/Three/ Four class classification using statistical and textural features. In this work, classification techniques based on Least Squares Support Vector Machine (LS-SVM) using textural features computed from the MR images of patient are …