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- Land application (4)
- Manure management (4)
- Bacteria (3)
- Cattle manure (3)
- E. coli (3)
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- Manure runoff (3)
- Microbial (3)
- Microorganisms (3)
- Remote sensing (3)
- Basal evapotranspiration (2)
- Drought-tolerance (2)
- Enzyme (2)
- Fed batch (2)
- Filter strips (2)
- Maize (2)
- Nonviral gene delivery (2)
- Optimization (2)
- Priming (2)
- Repeated batch (2)
- Runof (2)
- Transfection (2)
- UAV (2)
- Xylanase (2)
- ASCAT (1)
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- Aesthetics (1)
- Aging (1)
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- Air flow (1)
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Articles 1 - 30 of 43
Full-Text Articles in Engineering
Variable Rate Irrigation Of Maize And Soybean In West-Central Nebraska Under Full And Deficit Irrigation, J Burdette Barker, Sandeep Bhatti, Derek M. Heeren, Christopher M.U. Neale, Daran Rudnick
Variable Rate Irrigation Of Maize And Soybean In West-Central Nebraska Under Full And Deficit Irrigation, J Burdette Barker, Sandeep Bhatti, Derek M. Heeren, Christopher M.U. Neale, Daran Rudnick
Biological Systems Engineering: Papers and Publications
Variable rate irrigation (VRI) may improve center pivot irrigation management, including deficit irrigation. A remote-sensing-based evapotranspiration model was implemented with Landsat imagery to manage irrigations for a VRI equipped center pivot irrigated field located in West-Central Nebraska planted to maize in 2017 and soybean in 2018. In 2017, the study included VRI using the model, and uniform irrigation using neutron attenuation for full irrigation with no intended water stress (VRI-Full and Uniform-Full treatments, respectively). In 2018, two deficit irrigation treatments were added (VRI-Deficit and Uniform-Deficit, respectively) and the model was modified in an attempt to reduce water balance drift; model …
Microbial Transport As Affected By Residue Cover And Manure Application Rate, Lisa M. Durso, John E. Gilley, Dave B. Marx, Chance A. Thayer, Brian L. Woodbury
Microbial Transport As Affected By Residue Cover And Manure Application Rate, Lisa M. Durso, John E. Gilley, Dave B. Marx, Chance A. Thayer, Brian L. Woodbury
Biological Systems Engineering: Papers and Publications
Manure is applied to cropland areas with varying surface cover to meet single- or multiple-year crop nutrient requirements. The objectives of this field study were to (1) examine microbial transport following land application of manure to sites with and without wheat residue, (2) compare microbial loads following land application to meet the 0, 1, 2, 4, and 8-year P-based requirements for corn, and (3) evaluate the effects of rainfall simulation run on microbial transport. Manure was added and incorporated by disking plots that were 0.75 m wide by 2.0 m long. Three 30 min simulated rainfall events, separated by 24 …
High‑Throughput Analysis Of Leaf Physiological And Chemical Traits With Vis–Nir–Swir Spectroscopy: A Case Study With A Maize Diversity Panel, Yufeng Ge, Abbas Atefi, Huichun Zhang, Chenyong Miao, Raghuprakash Kastoori Ramamurthy, Brandi Sigmon, Jinliang Yang, James C. Schnable
High‑Throughput Analysis Of Leaf Physiological And Chemical Traits With Vis–Nir–Swir Spectroscopy: A Case Study With A Maize Diversity Panel, Yufeng Ge, Abbas Atefi, Huichun Zhang, Chenyong Miao, Raghuprakash Kastoori Ramamurthy, Brandi Sigmon, Jinliang Yang, James C. Schnable
Biological Systems Engineering: Papers and Publications
Hyperspectral reflectance data in the visible, near infrared and shortwave infrared range (VIS–NIR– SWIR, 400–2500 nm) are commonly used to nondestructively measure plant leaf properties. We investigated the usefulness of VIS–NIR–SWIR as a high-throughput tool to measure six leaf properties of maize plants including chlorophyll content (CHL), leaf water content (LWC), specific leaf area (SLA), nitrogen (N), phosphorus (P), and potassium (K). This assessment was performed using the lines of the maize diversity panel. Data were collected from plants grown in greenhouse condition, as well as in the field under two nitrogen application regimes. Leaf-level hyperspectral data were collected with …
A Spatially Enhanced Data‐Driven Multimodel To Improve Semiseasonal Groundwater Forecasts In The High Plains Aquifer, Usa, A. Amaranto, Francisco Munoz-Arriola, D. P. Solomatine, G. Corzo
A Spatially Enhanced Data‐Driven Multimodel To Improve Semiseasonal Groundwater Forecasts In The High Plains Aquifer, Usa, A. Amaranto, Francisco Munoz-Arriola, D. P. Solomatine, G. Corzo
Biological Systems Engineering: Papers and Publications
The aim of this paper is to improve semiseasonal forecast of groundwater availability in response to climate variables, surface water availability, groundwater level variations, and human water management using a two‐step data‐driven modeling approach. First, we implement an ensemble of artificial neural networks (ANNs) for the 300 wells across the High Plains aquifer (USA). The modeling framework includes a method to choose the most relevant input variables and time lags; an assessment of the effect of exogenous variables on the predictive capabilities of models; and the estimation of the forecast skill based on the Nash‐Sutcliffe efficiency (NSE) index, the normalized …
Environmental And Occupational Impacts From U.S. Beef Slaughtering Are Of Same Magnitude Of Beef Foodborne Illnesses On Human Health, Shaobin Li, Jeyamkondan Subbiah, Bruce Dvorak
Environmental And Occupational Impacts From U.S. Beef Slaughtering Are Of Same Magnitude Of Beef Foodborne Illnesses On Human Health, Shaobin Li, Jeyamkondan Subbiah, Bruce Dvorak
Biological Systems Engineering: Papers and Publications
Foodborne pathogens and occupational hazards are two primary safety concerns for U.S. beef slaughterhouses. The anthropogenic environmental impacts due to intensive resource use and pollution also exert threats to human health. Quantifying human health impacts from various sources remain a grand sustainability challenge for U.S. beef industry. We develop a framework to systematically estimate and compare human health impacts associated with U.S. beef foodborne illnesses from major pathogens and environmental impacts and occupational hazards from U.S. beef slaughtering on a common metric, disability-adjusted life year (DALY). Foodborne illnesses and occupational hazards are estimated by synthesizing published data and methodologies while …
Field Evidence Of A Natural Capillary Barrier In A Gravel Alluvial Aquifer, Todd Halihan, Ronald B. Miller, David Correll, Derek M. Heeren, Garey A. Fox
Field Evidence Of A Natural Capillary Barrier In A Gravel Alluvial Aquifer, Todd Halihan, Ronald B. Miller, David Correll, Derek M. Heeren, Garey A. Fox
Biological Systems Engineering: Papers and Publications
Ozark streams commonly feature “composite” floodplains, in which the vadose zone consists of silt or silt loam soils (?1 m thick) overlying gravel subsoil. Previous work has shown that preferential flow paths can exist within the gravel subsoil, which can conduct water and P at rates exceeding the sorption capacity of the gravel. At a site on Barren Fork Creek, a 1- by 1-m infiltration plot was constructed and an infiltration experiment was performed using sequentially introduced solutes including P (the constituent of regulatory interest), Rhodamine-WT (Rh-WT, a visual tracer), and Cl− (an electrical tracer). The solute transport was measured …
Wheat Strip Effects On Microbial Transport Following Variable Applications Of Beef Cattle Manure, Lisa M. Durso, John E. Gilley, David B. Marx, Chance A. Thayer, Bryan L. Woodbury
Wheat Strip Effects On Microbial Transport Following Variable Applications Of Beef Cattle Manure, Lisa M. Durso, John E. Gilley, David B. Marx, Chance A. Thayer, Bryan L. Woodbury
Biological Systems Engineering: Papers and Publications
Vegetative filter strips (VFS) consisting of perennial vegetation have been successfully used to reduce the transport of contaminants in runoff from land application areas. The effectiveness of a winter wheat strip, which may be more acceptable to producers, in reducing microbial transport was examined in this study. A 1.4 m wheat strip was used to allow direct comparison with experimental results obtained in previous studies. Beef cattle manure was applied to 0.75 m wide by 4.0 m long plots established on an Aksarben silty clay loam located in southeast Nebraska. Manure was added at rates required to meet the 0- …
Evaluation Of Selected Watershed Characteristics To Identify Best Management Practices To Reduce Nebraskan Nitrate Loads From Nebraska To The Mississippi/Atchafalaya River Basin, Aaron R. Mittelstet, Troy E. Gilmore, Tiffany Messer, Daran Rudnick, Thomas Heatherly
Evaluation Of Selected Watershed Characteristics To Identify Best Management Practices To Reduce Nebraskan Nitrate Loads From Nebraska To The Mississippi/Atchafalaya River Basin, Aaron R. Mittelstet, Troy E. Gilmore, Tiffany Messer, Daran Rudnick, Thomas Heatherly
Biological Systems Engineering: Papers and Publications
Nebraskan streams contribute excess nitrogen to the Mississippi/Atchafalaya River Basin and Gulf of Mexico, which results in major water-quality impairments. Reducing the amount of nitrogen (N) exported in these streams requires the use of best management practices (BMPs) within the landscape. However, proper BMP utilization has rarely been statistically connected to potential controls of N export within watersheds, particularly precipitation and soil characteristics. In this study, 19 watershed variables were evaluated in five categories (hydrological, physiographic, point sources, land use, and soil properties) to determine the characteristics that influenced variable nitrate nitrogen (NO3-N) concentrations in 17 Nebraska watersheds …
Quantifying And Correcting For Clay Content Effects On Soil Water Measurement By Reflectometers, Jasreman Singh, Tsz Him Lo, Daran Rudnick, Suat Irmak, Humberto Blanco-Canqui
Quantifying And Correcting For Clay Content Effects On Soil Water Measurement By Reflectometers, Jasreman Singh, Tsz Him Lo, Daran Rudnick, Suat Irmak, Humberto Blanco-Canqui
Biological Systems Engineering: Papers and Publications
The presence of clay particles increases the specific surface area of a soil and can affect the calibration of electromagnetic soil water sensors including reflectometers. To quantify and correct for this effect in two relatively new reflectometers, three TDR315 and three CS655 sensors were installed in each of five soils with clay content ranging from 5 to 49%. As the soils were dried in a temperature controlled room, sensor reported soil volumetric water content (θv) according to the factory calibration was compared against reference θv determined by weighing the soils. Sensor reported θv was similar to …
Aesthetics, Ethics, And Lose-Lose Dilemmas In The Anthropocen, Adam Liska
Aesthetics, Ethics, And Lose-Lose Dilemmas In The Anthropocen, Adam Liska
Biological Systems Engineering: Papers and Publications
Anthropogenic climate change will cause violence to increase globally, and nonlinear increases in sea level could cause a major escalation in global conflict. After 2100, a 22-meter sea-level rise is estimated here to dislocate two billion people from coastal areas. These impending civilization-changing events require us to again reevaluate our prevalent aesthetic preferences for luxury that produce a significant fraction of anthropogenic greenhouse gas emissions. Due to industrial inertia, a central dilemma discussed here is the contradictions between the goals and impacts of aesthetics and ethics. Either we lose our own well-being (a loss of high-emission aesthetics) for the benefit …
Deficit Irrigation Management Of Maize In The High Plains Aquifer Region: A Review, Daran Rudnick, Sibel Irmak, C. West, J.L. Chavez, I. Kisekka, T.H. Marek, J.P. Schneekloth, D. Mitchell Mccallister, V. Sharma, K. Djaman, J. Aguilar, M.E. Schipanski, D.H. Rogers, A. Schlegel
Deficit Irrigation Management Of Maize In The High Plains Aquifer Region: A Review, Daran Rudnick, Sibel Irmak, C. West, J.L. Chavez, I. Kisekka, T.H. Marek, J.P. Schneekloth, D. Mitchell Mccallister, V. Sharma, K. Djaman, J. Aguilar, M.E. Schipanski, D.H. Rogers, A. Schlegel
Biological Systems Engineering: Papers and Publications
Irrigated agriculture is a major economic contributor of the High Plains Region and it primarily relies on the High Plains Aquifer as a source of water. Over time, areas of the High Plains Aquifer have experienced drawdowns limiting its ability to supply sufficient water to sustain fully irrigated crop production. This among other reasons, including variable climatic factors and differences in state water policy, has resulted in some areas adopting and practicing deficit irrigation management. Considerable research has been conducted across the High Plains Aquifer region to identify locally appropriate deficit irrigation strategies. This review summarizes and discusses research conducted …
Biomaterial Substrate Modifications That Influence Cell-Material Interactions To Prime Cellular Responses To Nonviral Gene Delivery, Amy Mantz, Angela K. Pannier
Biomaterial Substrate Modifications That Influence Cell-Material Interactions To Prime Cellular Responses To Nonviral Gene Delivery, Amy Mantz, Angela K. Pannier
Biological Systems Engineering: Papers and Publications
Gene delivery is the transfer of exogenous genetic material into somatic cells to modify their gene expression, with applications including tissue engineering, regenerative medicine, sensors and diagnostics, and gene therapy. Viral vectors are considered the most effective system to deliver nucleic acids, yet safety concerns and many other disadvantages have resulted in investigations into an alternative option, i.e. nonviral gene delivery. Chemical nonviral gene delivery is typically accomplished by electrostatically complexing cationic lipids or polymers with negatively charged nucleic acids. Unfortunately, nonviral gene delivery suffers from low efficiency due to barriers that impede transfection success, including intracellular processes such as …
System For Optimizing Fed-Batch Hydrolysis Of Biomass, Chao Tai, Deepak R. Keshwani
System For Optimizing Fed-Batch Hydrolysis Of Biomass, Chao Tai, Deepak R. Keshwani
Biological Systems Engineering: Papers and Publications
Provided herein is a system for optimizing the fed - batch hydrolysis of biomass.
Microcontroller Based Granular Urea Application Attachment For Rice Transplanter, Md Towfiqur Rahman, Md Monjurul Alam, Md Mosharraf Hossain, Muhammad Rashed Al Mamun
Microcontroller Based Granular Urea Application Attachment For Rice Transplanter, Md Towfiqur Rahman, Md Monjurul Alam, Md Mosharraf Hossain, Muhammad Rashed Al Mamun
Biological Systems Engineering: Papers and Publications
Transplanting and fertilizer application for rice production in Bangladesh are tedious, time consuming and laborious task, and mostly done manually. Mechanical transplanting of rice becoming popular in the country in recent years and few machines have been developed for granular urea deep placement, however, having some limitations. Placing granular urea precisely along with rice transplanting, an attempt was under taken to design and fabricate an electronic control granular urea applicator to be attach with a 4-row walk behind type rice transplanter. Fabrication of the electronic granular urea applicator was done in the workshop of the Department of Farm Power and …
Optimization Of Process Parameters And Fermentation Strategy For Xylanase Production In A Stirred Tank Reactor Using A Mutant Aspergillus Nidulans Strain, Asmaa Abdella, Fernando Segato, Mark R. Wilkins
Optimization Of Process Parameters And Fermentation Strategy For Xylanase Production In A Stirred Tank Reactor Using A Mutant Aspergillus Nidulans Strain, Asmaa Abdella, Fernando Segato, Mark R. Wilkins
Biological Systems Engineering: Papers and Publications
The present work studied the optimization of aeration rate, agitation rate and oxygen transfer and the use of various batch fermentation strategies for xylanase production from a recombinant Aspergillus nidulans strain in a 3 L stirred tank reactor. Maximum xylanase production of 1250 U/mL with productivity of 313 U/mL/day was obtained under an aeration rate of 2 vvm and an agitation rate of 400 rpm using batch fermentation. The optimum volumetric oxygen transfer coefficient (kLa) for efficient xylanase production was found to be 38.6 h-1. Fed batch mode and repeated batch fermentation was also performed with kLa was 38.6 h …
Hydrogen Peroxide Sensors For Biomedical Applications, Jakob Meier, Eric M. Hofferber, Joseph A. Stapleton, Nicole M. Iverson
Hydrogen Peroxide Sensors For Biomedical Applications, Jakob Meier, Eric M. Hofferber, Joseph A. Stapleton, Nicole M. Iverson
Biological Systems Engineering: Papers and Publications
Hydrogen peroxide (H2O2) is an important molecule within the human body, but many of its roles in physiology and pathophysiology are not well understood. To better understand the importance of H2O2 in biological systems, it is essential that researchers are able to quantify this reactive species in various settings, including in vitro, ex vivo and in vivo systems. This review covers a broad range of H2O2 sensors that have been used in biological systems, highlighting advancements that have taken place since 2015.
Grain Yield, Crop And Basal Evapotranspiration, Production Functions And Water Productivity Response Of Drought-Tolerant And Non-Drought-Tolerant Maize Hybrids Under Different Irrigation Levels, And Population Densities: Part I. In Western Nebraska's Semi-Arid Environments, Ali T. Mohammed, Suat Irmak, William Kranz, Simon Van Donk, C. Dean Yonts
Grain Yield, Crop And Basal Evapotranspiration, Production Functions And Water Productivity Response Of Drought-Tolerant And Non-Drought-Tolerant Maize Hybrids Under Different Irrigation Levels, And Population Densities: Part I. In Western Nebraska's Semi-Arid Environments, Ali T. Mohammed, Suat Irmak, William Kranz, Simon Van Donk, C. Dean Yonts
Biological Systems Engineering: Papers and Publications
Grain yield, crop evapotranspiration (ETc), basal evapotranspiration (ETb), ETc-yield production functions (ETYPF), and crop water use efficiency (CWUE) response of three drought-tolerant (DT) and one non-drought-tolerant (NDT) maize (Zea mays L.) hybrids to two plant population densities (PPDs) [84,000 plants ha-1 (high PPD) and 59,300 plants ha-1 (low PPD)] and three irrigation levels were researched at two semi-arid locations: North Platte (WCREC) and Scottsbluff (MAL), Nebraska, in 2010, 2011, and 2012. The irrigation levels were fully irrigated (FIT), early cutoff (ECOT), and rainfed (RFT). Precipitation in 2010 was above average, 2011 was a normal year, and 2012 was one of …
Fuzzy Control System For Variable Rate Irrigation Using Remote Sensing, Willians Ribeiro Mendes, Fábio Meneghetti U. Araújo, Ritaban Dutta, Derek M. Heeren
Fuzzy Control System For Variable Rate Irrigation Using Remote Sensing, Willians Ribeiro Mendes, Fábio Meneghetti U. Araújo, Ritaban Dutta, Derek M. Heeren
Biological Systems Engineering: Papers and Publications
Variable rate irrigation (VRI) is the capacity to spatially vary the depth of water application in a field to handle different types of soils, crops, and other conditions. Precise management zones must be developed to efficiently apply variable rate technologies. However, there is no universal method to determine management zones. Using speed control maps for the central pivot is one option. Thus, this study aims to develop an intelligent fuzzy inference system based on precision irrigation knowledge, i.e., a system that can create prescriptive maps to control the rotation speed of the central pivot. Satellite images are used in this …
Nucleic Acid Delivery To Mesenchymal Stem Cells: A Review Of Nonviral Methods And Applications, Andrew Hamann, Albert Nguyen, Angela K. Pannier
Nucleic Acid Delivery To Mesenchymal Stem Cells: A Review Of Nonviral Methods And Applications, Andrew Hamann, Albert Nguyen, Angela K. Pannier
Biological Systems Engineering: Papers and Publications
Background: Mesenchymal stem cells (MSCs) are multipotent stem cells that can be isolated and expanded from many tissues, and are being investigated for use in cell therapies. Though MSC therapies have demonstrated some success, none have been FDA approved for clinical use. MSCs lose stemness ex vivo, decreasing therapeutic potential, and face additional barriers in vivo, decreasing therapeutic efficacy. Culture optimization and genetic modification of MSCs can overcome these barriers. Viral transduction is efficient, but limited by safety concerns related to mutagenicity of integrating viral vectors and potential immunogenicity of viral antigens. Nonviral delivery methods are safer, though limited …
The Development Of The Infews-Er: A Virtual Resource Center For Transdisciplinary Graduate Student Training At The Nexus Of Food, Energy, And Water, Luis F. Rodriguez, Anna-Maria Marshall, Dan Cotton, Richard K. Koelsch, Jacek Koziel, Deanne Meyer, Dan Steward, Jill Heemstra, Anand Padmanabahn, John Classen, Nathan J. Meyer, Benjamin L. Ruddell, Sean M. Ryan, Ximing Cai, Emad Habib, Peter D. Saundry
The Development Of The Infews-Er: A Virtual Resource Center For Transdisciplinary Graduate Student Training At The Nexus Of Food, Energy, And Water, Luis F. Rodriguez, Anna-Maria Marshall, Dan Cotton, Richard K. Koelsch, Jacek Koziel, Deanne Meyer, Dan Steward, Jill Heemstra, Anand Padmanabahn, John Classen, Nathan J. Meyer, Benjamin L. Ruddell, Sean M. Ryan, Ximing Cai, Emad Habib, Peter D. Saundry
Biological Systems Engineering: Papers and Publications
Problems at the nexus of Food, Energy and Water Systems (FEWS) are among the most complex challenges we face. Spanning simple to complex temporal, geographic, social, and political framings, the questions raised at this nexus require multidisciplinary if not transdisciplinary approaches. Answers to these questions must draw from engineering, the physical and biological sciences, and the social sciences. Practical solutions depend upon a wide community of stakeholders, including industry, policymakers, and the general public. Yet there are many obstacles to working in a transdisciplinary environment: unfamiliar concepts, specialized terminology, and countless “blind” spots. Graduate education occurs in disciplinary ‘silos’, often …
Water Effects On Optical Canopy Sensing For Late-Season Site-Specific Nitrogen Management Of Maize, Tsz Him Lo, Daran Rudnick, Brian Krienke, D. M. Heeren, Yufeng Ge, Tim M. Shaver
Water Effects On Optical Canopy Sensing For Late-Season Site-Specific Nitrogen Management Of Maize, Tsz Him Lo, Daran Rudnick, Brian Krienke, D. M. Heeren, Yufeng Ge, Tim M. Shaver
Biological Systems Engineering: Papers and Publications
The interpretation of optical canopy sensor readings for determining optimal rates of late-season site-specific nitrogen application to corn (Zea mays L.) can be complicated by spatially variable water sufficiency, which can also affect canopy size and/or pigmentation. In 2017 and 2018, corn following corn and corn following soybeans were subjected to irrigation×nitrogen fertilizer treatments in west central Nebraska, USA, to induce variable water sufficiency and variable nitrogen sufficiency. The vegetation index-sensor combinations investigated were the normalized difference vegetation index (NDVI), the normalized difference red edge index (NDRE), and the reflectance ratio of near infrared minus red edge over near …
Principal Variable Selection To Explain Grain Yield Variation In Winter Wheat From Features Extracted From Uav Imagery, Jiating Li, Arun-Narenthiran Veeranampalayam-Sivakumar, Madhav Bhatta, Nicholas D. Garst, Hannah Stoll, P. Stephen Baenziger, Vikas Belamkar, Reka Howard, Yufeng Ge, Jiating Li
Principal Variable Selection To Explain Grain Yield Variation In Winter Wheat From Features Extracted From Uav Imagery, Jiating Li, Arun-Narenthiran Veeranampalayam-Sivakumar, Madhav Bhatta, Nicholas D. Garst, Hannah Stoll, P. Stephen Baenziger, Vikas Belamkar, Reka Howard, Yufeng Ge, Jiating Li
Biological Systems Engineering: Papers and Publications
Background: Automated phenotyping technologies are continually advancing the breeding process. However, collecting various secondary traits throughout the growing season and processing massive amounts of data still take great efforts and time. Selecting a minimum number of secondary traits that have the maximum predictive power has the potential to reduce phenotyping efforts. The objective of this study was to select principal features extracted from UAV imagery and critical growth stages that contributed the most in explaining winter wheat grain yield. Five dates of multispectral images and seven dates of RGB images were collected by a UAV system during the spring growing …
Minimal Interspecies Interaction Adjustment (Miia): Inference Of Neighbor-Dependent Interactions In Microbial Communities, Hyun-Seob Song, Joon-Yong Lee, Shin Haruta, William C. Nelson, Dong-Yup Lee, Stephen R. Lindemann, Jim K. Fredrickson, Hans C. Bernstein
Minimal Interspecies Interaction Adjustment (Miia): Inference Of Neighbor-Dependent Interactions In Microbial Communities, Hyun-Seob Song, Joon-Yong Lee, Shin Haruta, William C. Nelson, Dong-Yup Lee, Stephen R. Lindemann, Jim K. Fredrickson, Hans C. Bernstein
Biological Systems Engineering: Papers and Publications
An intriguing aspect in microbial communities is that pairwise interactions can be influenced by neighboring species. This creates context dependencies for microbial interactions that are based on the functional composition of the community. Context dependent interactions are ecologically important and clearly present in nature, yet firmly established theoretical methods are lacking from many modern computational investigations. Here, we propose a novel network inference method that enables predictions for interspecies interactions affected by shifts in community composition and species populations. Our approach first identifies interspecies interactions in binary communities, which is subsequently used as a basis to infer modulation in more …
Agenator: An Open Source Computer-Controlled Dry Aging System For Beef, Soon Kiat Lau, Felipe Azevedo Ribeiro, Jeyamkondan Subbiah, Chris R. Calkins
Agenator: An Open Source Computer-Controlled Dry Aging System For Beef, Soon Kiat Lau, Felipe Azevedo Ribeiro, Jeyamkondan Subbiah, Chris R. Calkins
Biological Systems Engineering: Papers and Publications
Dry aging of beef is a process where beef is exposed to a controlled environment with the ultimate goal of drying the beef to improve its quality and value. Comprehensive investigations into the effects of various environmental conditions on dry aging are crucial for understanding and optimizing the process, but the lack of affordable equipment focused on data collection makes it difficult to do so. The Agenator was thus developed as an open source system with a suite of features for investigating dry aging such as: measuring and recording relative humidity, temperature, mass, air velocity, and fan rotational speed; precise …
A Machine Learning Approach For Improving Near-Real-Time Satellite-Based Rainfall Estimates By Integrating Soil Moisture, Ashish Kumar, Raaj Ramsankaran, Luca Brocca, Francisco Munoz-Arriola
A Machine Learning Approach For Improving Near-Real-Time Satellite-Based Rainfall Estimates By Integrating Soil Moisture, Ashish Kumar, Raaj Ramsankaran, Luca Brocca, Francisco Munoz-Arriola
Biological Systems Engineering: Papers and Publications
Near-real-time (NRT) satellite-based rainfall estimates (SREs) are a viable option for flood/drought monitoring. However, SREs have often been associated with complex and nonlinear errors. One way to enhance the quality of SREs is to use soil moisture information. Few studies have indicated that soil moisture information can be used to improve the quality of SREs. Nowadays, satellite-based soil moisture products are becoming available at desired spatial and temporal resolutions on an NRT basis. Hence, this study proposes an integrated approach to improve NRT SRE accuracy by combining it with NRT soil moisture through a nonlinear support vector machine-based regression (SVR) …
A Role For Nanoparticles In Treating Traumatic Brain Injury, Badrul Alam Bony, Forrest M. Kievit
A Role For Nanoparticles In Treating Traumatic Brain Injury, Badrul Alam Bony, Forrest M. Kievit
Biological Systems Engineering: Papers and Publications
Traumatic brain injury (TBI) is one of the main causes of disability in children and young adults, as well as a significant concern for elderly individuals. Depending on the severity, TBI can have a long-term impact on the quality of life for survivors of all ages. The primary brain injury can result in severe disability or fatality, and secondary brain damage can increase the complexities in cellular, inflammatory, neurochemical, and metabolic changes in the brain, which can last decades post-injury. Thus, survival from a TBI is often accompanied by lifelong disabilities. Despite the significant morbidity, mortality, and economic loss, there …
Heterologous Expression And Functional Characterization Of A Gh10 Endoxylanase From Aspergillus Fumigatus Var. Niveus With Potential Biotechnological Application, Josman Velasco, Bianca Oliva, Evandro Jose Mulinari, Leidy Patricia Quintero, Awana Da Silva Lima, Aline Larissa Goncalves, Thiago Augusto Goncalves, Andre Damasio, Fabio Marcio Squina, Adriane Maria Ferreira Milagres, Asmaa Abdella, Mark R. Wilkins, Fernando Segato
Heterologous Expression And Functional Characterization Of A Gh10 Endoxylanase From Aspergillus Fumigatus Var. Niveus With Potential Biotechnological Application, Josman Velasco, Bianca Oliva, Evandro Jose Mulinari, Leidy Patricia Quintero, Awana Da Silva Lima, Aline Larissa Goncalves, Thiago Augusto Goncalves, Andre Damasio, Fabio Marcio Squina, Adriane Maria Ferreira Milagres, Asmaa Abdella, Mark R. Wilkins, Fernando Segato
Biological Systems Engineering: Papers and Publications
Xylanases decrease the xylan content in pretreated biomass releasing it from hemicellulose, thus improving the accessibility of cellulose for cellulases. In this work, an endo-β-1,4-xylanase from Aspergillus fumigatus var. niveus (AFUMN-GH10) was successfully expressed. The structural analysis and biochemical characterization showed this AFUMN-GH10 does not contain a carbohydrate-binding module. The enzyme retained its activity in a pH range from 4.5 to 7.0, with an optimal temperature at 60°C. AFUMN-GH10 showed the highest activity in beechwood xylan. The mode of action of AFUMNGH10 was investigated by hydrolysis of APTS-labeled xylohexaose, which resulted in xylotriose and xylobiose as the main products. AFUMN-GH10 …
High-Speed, High-Frequency Ultrasound, In Utero Vector-Flow Imaging Of Mouse Embryos, Jeffrey A. Ketterling, Orlando Aristizabal, Billy Y. S. Yiu, Daniel H. Turnbull, Colin K. L. Phoon, Alfred C. H. Yu, Ronald H. Silverman
High-Speed, High-Frequency Ultrasound, In Utero Vector-Flow Imaging Of Mouse Embryos, Jeffrey A. Ketterling, Orlando Aristizabal, Billy Y. S. Yiu, Daniel H. Turnbull, Colin K. L. Phoon, Alfred C. H. Yu, Ronald H. Silverman
Biological Systems Engineering: Papers and Publications
Real-time imaging of the embryonic murine cardiovascular system is challenging due to the small size of the mouse embryo and rapid heart rate. High-frequency, linear-array ultrasound systems designed for small-animal imaging provide high-frame-rate and Doppler modes but are limited in regards to the field of view that can be imaged at fine-temporal and -spatial resolution. Here, a plane-wave imaging method was used to obtain high-speed image data from in utero mouse embryos and multi-angle, vector-flow algorithms were applied to the data to provide information on blood flow patterns in major organs. An 18-MHz linear array was used to acquire plane-wave …
Antibiotic Resistance Gene Profile Changes In Cropland Soil After Manure Application And Rainfall, Morgan Meyers, Lisa Durso, John E. Gilley, Heidi Waldrip, Lana Castleberry, Amy Millmier Schmidt
Antibiotic Resistance Gene Profile Changes In Cropland Soil After Manure Application And Rainfall, Morgan Meyers, Lisa Durso, John E. Gilley, Heidi Waldrip, Lana Castleberry, Amy Millmier Schmidt
Biological Systems Engineering: Papers and Publications
Land application of manure introduces gastrointestinal microbes into the environment, including bacteria carrying antibiotic resistance genes (ARGs). Measuring soil ARGs is important for active stewardship efforts to minimize gene flow from agricultural production systems; however, the variety of sampling protocols and target genes makes it difficult to compare ARG results between studies. We used polymerase chain reaction (PCR) methods to characterize and/or quantify 27 ARG targets in soils from 20 replicate, long-term no-till plots, before and after swine manure application and simulated rainfall and runoff. All samples were negative for the 10 b-lactamase genes assayed. For tetracycline resistance, only source …
Actual Evapotranspiration And Crop Coefficients Of Irrigated Lowland Rice (Oryza Sativa L.) Under Semiarid Climate, Koffi Djaman, Daran R. Rudnick, Yonnelle D. Moukoumbi, Abdoulaye Sow, Suat Irmak
Actual Evapotranspiration And Crop Coefficients Of Irrigated Lowland Rice (Oryza Sativa L.) Under Semiarid Climate, Koffi Djaman, Daran R. Rudnick, Yonnelle D. Moukoumbi, Abdoulaye Sow, Suat Irmak
Biological Systems Engineering: Papers and Publications
Lowland irrigated rice is the predominant crop produced in the Senegal River Valley characterized by very low annual rainfall, high temperatures, and low relative humidity. The Senegal River is shared by Senegal, Mali, Mauritania, and Guinea, and serves as the main source of irrigation water for the adopted double rice cropping system. Developing appropriate resource management strategies might be the key factor for the sustainability of rice production in the region. This study aims to estimate rice seasonal evapotranspiration (ETa), irrigation water requirement, and to develop rice growth stage specific crop coefficients (Kc) to improve rice water productivity. Field experiments …