Engineering Commons^™

Control Mechanisms For Adaptive Nanoscale Devices, David Arredondo

Nanoscience and Microsystems ETDs

Nanotechnology promises to revolutionize many areas of applied science including materials, synthetic biology, and medicine. Devices may consist of solution-phase information processing systems or molecular robots. Of particular interest are DNA-based systems due to their composability and relatively simple interactions that are suited to bottom-up design. This work introduces high-level designs of robust control mechanisms for nanoscale devices with immediate applications in molecular computing, synthetic biology, and DNA robotics.

Nanoscale systems are dominated by probabilistic chemical behavior, so engineers must take careful consideration to produce predictable systems. Probabilistic behavior in chemical reaction networks (CRNs) yields deterministic evolution of species concentrations …

A Versatile Python Package For Simulating Dna Nanostructures With Oxdna, Kira Threlfall

Computer Science and Computer Engineering Undergraduate Honors Theses

The ability to synthesize custom DNA molecules has led to the feasibility of DNA nanotechnology. Synthesis is time-consuming and expensive, so simulations of proposed DNA designs are necessary. Open-source simulators, such as oxDNA, are available but often difficult to configure and interface with. Packages such as oxdna-tile-binding pro- vide an interface for oxDNA which allows for the ability to create scripts that automate the configuration process. This project works to improve the scripts in oxdna-tile-binding to improve integration with job scheduling systems commonly used in high-performance computing environments, improve ease-of-use and consistency within the scripts compos- ing oxdna-tile-binding, and move …

Defining Interactions Between Deformable Dna Origami And Lipid Bilayers Through Molecular Dynamics Simulation, Zachary A. Loyd

Chancellor’s Honors Program Projects

No abstract provided.

The Role Of Extracellular Polymeric Substances In The Accumulation And Transport Of Polystyrene Nanoparticles In Biofilms, Joann Marie Rodríguez Suarez

Doctoral Dissertations

With the increasing number of nanotechnology applications, it is reasonable to expect nanoparticles to be ubiquitous in biofilms found in natural and engineered aquatic systems. We studied the impact of the degree of cross-linking on the deposition and diffusion of polystyrene nanoparticles (NPs) in alginate model biofilm matrices in the presence and absence of calcium cross-linkers using image correlation methods and single particle tracking. We found that cross-linking increases the viscoelasticity and hydration of the polymeric matrix and leads to structural changes that can restrict and alter the diffusive behavior of NPs, but the magnitude of the effects on diffusion …

Demonstration Of High-Temperature Operation Of Beta-Gallium Oxide (Β-Ga2o3) Metal-Oxide-Semiconductor Field Effect Transistors (Mosfet) With Electrostatic Model In Comsol, Nicholas Paul Sepelak

Browse all Theses and Dissertations

β-Ga2O3 is a robust semiconductor material set with a large band gap of ~4.8 eV, low intrinsic carrier concentration, and high melting point that offers a stable platform for operating electronic devices at high temperatures and extreme environments. The first half of this thesis will cover the fabrication of a fixture and packaging to test electronic components at high temperatures. Then it will highlight the characterization of β-Ga2O3 field effect transistors from room temperature (RT) up to 500 °C. The devices, fabricated with Ni/Au and Al2O3 gate metal-oxide-semiconductor (MOS), demonstrate stable operation up to 500 oC. The tested device shows …

Development Of A Model For Graphene Synthesis In Microwave Plasma-Assisted Reactors, Caleb Prindler

Electronic Theses and Dissertations

Graphene is a novel nanomaterial capable of revolutionizing technology in many sectors but is difficult to produce on a useful scale. To improve our understanding of graphene formation, a computational model has been developed to simulate graphene synthesis in a scalable microwave plasma reactor. Unlike earlier graphene growth models, this one uses a sectional method to solve the population balance model. A sensitivity analysis was performed to assess the impact of the individual process rates. The rates were adjusted by multiplying and dividing the base rates by a factor of 2. The process rates that were adjusted in this way …