Engineering Commons^™

Developing An Immunomodulatory Strategy Using Biophysical Cues To Modulate Macrophage Phenotype For Fracture Healing And Bone Regeneration, Harshini Suresh Kumar

Theses and Dissertations--Biomedical Engineering

Chronic inflammation is a major cause of the pathogenesis of musculoskeletal diseases such as fragility, fracture, and nonunion. Studies have shown that modulating the immune phenotype of macrophages from proinflammatory to pro-healing can heal recalcitrant bone defects. Current therapeutic strategies predominantly apply biochemical cues, which often lack target specificity, and controlling their release kinetics in vivo is challenging spatially and temporally. We have developed a magnetic iron-oxide nanocomplexes (MNC)-based therapy for resolving chronic inflammation in the context of promoting fracture healing. Here, we show that MNC internalized macrophages, when coupled with an external magnetic field, can exert an intracellular magnetic …

Construction And Performance Optimization Of Bioconjugated Nanosensors For Early Detection Of Breast Cancer And Pro-Inflammatory Diseases, Pooja Gaikwad

Dissertations, Theses, and Capstone Projects

In recent years, nanosensors have emerged as a tool with strong potential in medical diagnostics. Single-walled carbon nanotube (SWCNT) based optical nanosensors have notably garnered interest due to the unique characteristics of their near-infrared fluorescence emission, including tissue transparency, photostability, and various chiralities with discrete absorption and fluorescence emission bands. Additionally, the optoelectronic properties of SWCNT are sensitive to the surrounding environment, which makes them suitable for in vitro and in vivo biosensing. Single-stranded (ss) DNA-wrapped SWCNTs have been reported as optical nanosensors for cancers and metabolic diseases. Breast cancer and cardiovascular diseases are the most common causes of death …

Reducing Agglomeration Of Lab-Synthesized And Functionalized Barium Titanate Nanoparticle Composites, Jessica N. Domrzalski

Nanoscience and Microsystems ETDs

Barium titanate (BTO) has been extensively studied for its promise in increasing device performance with its high dielectric constant. With the world moving toward miniaturization, research in nanotechnology is paving a road for the future of electronics, energy storage, and batteries. A challenge in understanding BTO’s potential lies in the particles’ tendency to agglomerate. Nanoparticles behave differently than their bulk counterparts, so understanding size effects is a crucial step in understanding BTO. In this work, BTO nanoparticles are synthesized via a hydrolysis reaction, then functionalized via a ligand exchange reaction to reduce agglomeration. BTO is added to epoxy composites at …

Pamam- Cyclodextrin Conjugate Upregulates Brain-Derived Neurotropic Factor In Arpe-19 Cells, Gopika Ashokan

USF Tampa Graduate Theses and Dissertations

Background: Traumatic Brain Injury (TBI) is a major contributor to death and disability due to motorvehicle accidents, sports, physical abuse, and battlefield injuries. The primary insult to the brain leads to inflammation, vascular dysfunction, and oxidative stress in the brain as well as in the eye. This leads to loss of Retinal Ganglion Cells (RGCs) and downregulation of Brain derived Neurotopic Factor (BDNF). BDNF is a neurotrophic factor that binds to Tropomyosin Receptor Kinase B (TrkB) receptor to promote cell growth, survival, and differentiation. Current treatment strategies do not promote neuronal regeneration. Therefore, novel treatments are needed to restore vision …

Control Mechanisms For Adaptive Nanoscale Devices, David Arredondo

Nanoscience and Microsystems ETDs

Nanotechnology promises to revolutionize many areas of applied science including materials, synthetic biology, and medicine. Devices may consist of solution-phase information processing systems or molecular robots. Of particular interest are DNA-based systems due to their composability and relatively simple interactions that are suited to bottom-up design. This work introduces high-level designs of robust control mechanisms for nanoscale devices with immediate applications in molecular computing, synthetic biology, and DNA robotics.

Nanoscale systems are dominated by probabilistic chemical behavior, so engineers must take careful consideration to produce predictable systems. Probabilistic behavior in chemical reaction networks (CRNs) yields deterministic evolution of species concentrations …

A Versatile Python Package For Simulating Dna Nanostructures With Oxdna, Kira Threlfall

Computer Science and Computer Engineering Undergraduate Honors Theses

The ability to synthesize custom DNA molecules has led to the feasibility of DNA nanotechnology. Synthesis is time-consuming and expensive, so simulations of proposed DNA designs are necessary. Open-source simulators, such as oxDNA, are available but often difficult to configure and interface with. Packages such as oxdna-tile-binding pro- vide an interface for oxDNA which allows for the ability to create scripts that automate the configuration process. This project works to improve the scripts in oxdna-tile-binding to improve integration with job scheduling systems commonly used in high-performance computing environments, improve ease-of-use and consistency within the scripts compos- ing oxdna-tile-binding, and move …

Defining Interactions Between Deformable Dna Origami And Lipid Bilayers Through Molecular Dynamics Simulation, Zachary A. Loyd

Chancellor’s Honors Program Projects

No abstract provided.

The Role Of Extracellular Polymeric Substances In The Accumulation And Transport Of Polystyrene Nanoparticles In Biofilms, Joann Marie Rodríguez Suarez

Doctoral Dissertations

With the increasing number of nanotechnology applications, it is reasonable to expect nanoparticles to be ubiquitous in biofilms found in natural and engineered aquatic systems. We studied the impact of the degree of cross-linking on the deposition and diffusion of polystyrene nanoparticles (NPs) in alginate model biofilm matrices in the presence and absence of calcium cross-linkers using image correlation methods and single particle tracking. We found that cross-linking increases the viscoelasticity and hydration of the polymeric matrix and leads to structural changes that can restrict and alter the diffusive behavior of NPs, but the magnitude of the effects on diffusion …

Development Of A Model For Graphene Synthesis In Microwave Plasma-Assisted Reactors, Caleb Prindler

Electronic Theses and Dissertations

Graphene is a novel nanomaterial capable of revolutionizing technology in many sectors but is difficult to produce on a useful scale. To improve our understanding of graphene formation, a computational model has been developed to simulate graphene synthesis in a scalable microwave plasma reactor. Unlike earlier graphene growth models, this one uses a sectional method to solve the population balance model. A sensitivity analysis was performed to assess the impact of the individual process rates. The rates were adjusted by multiplying and dividing the base rates by a factor of 2. The process rates that were adjusted in this way …

Demonstration Of High-Temperature Operation Of Beta-Gallium Oxide (Β-Ga2o3) Metal-Oxide-Semiconductor Field Effect Transistors (Mosfet) With Electrostatic Model In Comsol, Nicholas Paul Sepelak

Browse all Theses and Dissertations

β-Ga2O3 is a robust semiconductor material set with a large band gap of ~4.8 eV, low intrinsic carrier concentration, and high melting point that offers a stable platform for operating electronic devices at high temperatures and extreme environments. The first half of this thesis will cover the fabrication of a fixture and packaging to test electronic components at high temperatures. Then it will highlight the characterization of β-Ga2O3 field effect transistors from room temperature (RT) up to 500 °C. The devices, fabricated with Ni/Au and Al2O3 gate metal-oxide-semiconductor (MOS), demonstrate stable operation up to 500 oC. The tested device shows …

Multifunctional Programmable Self-Assembled Nanoparticles In Nanomedicine, Yoshie Sakamaki

Graduate Theses and Dissertations

Developing methodologies to control the architecture of nanoparticles (NPs) at the atomic level prevents their inhomogeneity and leads to a variety of expected functions. Rationally designed nanoparticles can either be programmed or crystallized structures into pre-determined structures achieving tunable particle pore size and physiochemistry. In this dissertation, two broad classes of multifunctional nanoparticles are developed, metal-organic frameworks and DNA-NP aggregates.

Metal-organic frameworks are a novel class of highly porous crystalline materials built from organic linkers and metal cluster-based secondary building units. However, applications in bioremediation have not been developed very well especially in applications regarding drug delivery systems (DDS). The …

Two-Dimensional Black Phosphorus For Terahertz Emission And Near-Field Radiative Heat Transfer, Mahmudul Hasan Doha

Graduate Theses and Dissertations

The main focus of this work is to investigate two potential optical and optoelectronic applications of black phosphorus (BP): the near-field radiative heat transfer in plasmonic heterostructures with graphene and terahertz emission from multi-layer BP photoconductive antennas. When the separation distance between graphene-black phosphorene is much smaller than or comparable to the thermal wavelength at different temperatures, a near-field radiation heat transfer breaks the Planck blackbody limit. The magnitude of the near-field radiation enhancement acutely depends on the gate voltage, doping, and vacuum gap of the graphene and BP pair. The strong near-field radiation heat transfer enhancement of the specific …

Design And Characterization Of Standard Cell Library Using Finfets, Phanindra Datta Sadhu

Master's Theses

The processors and digital circuits designed today contain billions of transistors on a small piece of silicon. As devices are becoming smaller, slimmer, faster, and more efficient, the transistors also have to keep up with the demands and needs of the daily user. Unfortunately, the CMOS technology has reached its limit and cannot be used to scale down due to the transistor's breakdown caused by short channel effects. An alternative solution to this is the FinFET transistor technology, where the gate of the transistor is a three dimensional fin that surrounds the transistor and prevents the breakdown caused by scaling …

Peptoid-Functionalized Gold Nanoparticles For Zika Virus Envelope Protein Detection, Meagan Olsen

Chemical Engineering Undergraduate Honors Theses

Detection and identification of viral pathogens is essential in providing effective and rapid medical treatment. Well-established detection methods can be expensive, slow, and sometimes unable to provide the needed sensitivity and specificity. The Zika virus is one clinically relevant pathogen that cannot be easily identified due to cross-reactivity with other viruses from the same family. Electrochemical sensors enhanced with peptoid-functionalized gold nanoparticles (AuNPs) are an alternative to traditional techniques that offers rapid, accurate, label-free pathogen detection for point-of-care diagnostics. To this end, a peptoid capable of binding to the Zika virus envelope protein was developed and its binding affinity for …

Carbon Nanotube-Coated Scaffolds For Tissue Engineering Applications, Soham Dipakbhai Parikh

Browse all Theses and Dissertations

Carbon Nanotubes (CNTs) have beneficial properties for cell scaffolding, which has translated into effective growth of bone, muscle, and cardiac cells. However, loose carbon nanotubes can cause in vivo toxicity. To reduce this risk, our team has developed biomimetic scaffolds with multiscale hierarchy where carpet-like CNT arrays are covalently bonded to larger biocompatible substrates. In this study, we have tested such scaffolds in two distinct types of biomedical applications involving glioblastoma and keratinocyte cells. The growth of glioblastoma (GBM) cells on our CNT-coated biomimetic scaffolds was evaluated to check their suitability as a potential chemotherapy-loaded implant for GBM patient treatment. …

Applications Of Cathodoluminescence In Plasmonic Nanostructures And Ultrathin Inas Quantum Layers, Qigeng Yan

Graduate Theses and Dissertations

Due to the advanced focusing ability, characterization methods based on the electron-beam excitation have been broadly applied to investigate nanomaterials. Structural or compositional information is commonly acquired using electron microscopes. Moreover, taking advantage of the super spatial resolution of the focused electron beam, optical properties of nanomaterials can be also obtained. Herein, general concepts and processes of the interaction between electrons and materials are studied. Two specific optical nanomaterials, including plasmonic nanostructures and semiconductor quantum layers, are investigated by the cathodoluminescence (CL) measurement.

Surface plasmonic resonance can be generated when high-energy electrons strike the interface between the dielectric medium and …

Thermal Transport Modeling Of Semiconductor Materials From First Principles, Aliya Qureshi

Masters Theses

Over the past few years, the size of semiconductor devices has been shrinking whereas the density of transistors has exponentially increased. Thus, thermal management has become a serious concern as device performance and reliability is greatly affected by heat. An understanding of thermal transport properties at device level along with predictive modelling can lead us to design of new systems and materials tailored according to the thermal conductivity. In our work we first review different models used to calculate thermal conductivity and examine their accuracy using the experimentally measured thermal conductivity for Si. Our results suggest that empirically calculated rates …

Protecting Crops From Abiotic Stress: Copper Oxide Nanoparticle Effects On Wheat And A Beneficial Rhizobacterium, Matthew Potter

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Nanoparticles (NPs) are defined as particles less than 100 nm in at least one dimension. CuO NPs have possible applications in agriculture as micronutrient sources, pesticides, and enhancers of crop stress tolerance. Here, three aspects of CuO NP agricultural applications are studied: 1) the potential of CuO NPs to prevent wheat lodging-when crops irreversibly fall over; 2) CuO NP-induced drought tolerance in wheat seedlings; and 3) the effects of CuO NPs on outer membrane vesicle (OMV) production by Pseudomonas chlororaphis O6 (PcO6), a plant-health promoting bacterium.

Wheat grown 7 d exposed to CuO NPs in the growth matrix …

Hyaluronic Acid Coated Targeted Lipid Micellar Nanoparticle As A Delivery Vehicle For Lapatinib And Ketoconazole In Egfr Mutated Lung Cancer, Nadia Tasnim Ahmed

USF Tampa Graduate Theses and Dissertations

Background: According to the American Cancer Society, lung cancer was accountable for over 142,000 deaths in the USA in 2019. Common mutations related to lung cancer mainly occur in TP53, EGFR, and KRAS genes. Lapatinib is a small molecule tyrosine kinase inhibitor which acts reversibly on both epidermal growth factor receptor (EGFR) and human epidermal growth factor receptor 2 (HER2). Overexpression of EGFR leads to increased production and signaling of proteins that cause upregulation of cellular proliferation, cholesterol synthesis and resistance to apoptosis. Ketoconazole is an imidazole antifungal agent which works principally by inhibiting the enzyme cytochrome P450 14α-demethylase (CYP51A1) …

Toward Precision Medicine With Nanopore Technology, Trang Andrea Vu

Theses and Dissertations

Currently, when patients are diagnosed with cancer, they often receive a treatment based on the type and stage of the tumor. However, different patients may respond to the same treatment differently, due to the variation in their genomic alteration profile. Thus, it is essential to understand the effect of genomic alterations on cancer drug efficiency and engineer devices to monitor these changes for therapeutic response prediction. Nanopore-based detection technology features devices containing a nanometer-scale pore embedded in a thin membrane that can be utilized for DNA sequencing, biosensing, and detection of biological or chemical modifications on single molecules. Overall, this …

Analysis And Optimization Of Colorimetric Nanosensors For Rapid Detection Of Microbes In Water, Ruby A. Lang

Master's Theses

Access to safe water is a basic human right recognized by the United Nations General Assembly in 2010 (WHO, 2020). However, a least 2.2 billion people globally still are without safely managed water services meaning they use a drinking water source that can be contaminated with faeces (WHO, 2020). With such a pressing global health issue, it is clear that improvement to water systems is important and required in the Agenda 2030 Sustainable Development Goals (SDGs). However, to improve water systems and prove they are safe water sources, water quality testing must occur. A solution to this issue is the …

Light Downshifting Zinc Oxide-Ethylene Vinyl Acetate Nanocomposite Greenhouse Films, David V. Hiscott

Electronic Thesis and Dissertation Repository

One method to increase the productivity of greenhouse agriculture is to increase the amount of photosynthetically available light within. This was accomplished through the use of nanocomposite greenhouse film comprised of light downshifting zinc oxide quantum dots and ethylene vinyl acetate copolymer. As this material will be used on a commodity scale, two different approaches – a large batch process and continuous plug flow reactor – were designed for mass production of zinc oxide. A design of experiment was performed to determine which synthesis parameters contribute more strongly to the quantum dot’s growth. This was done for a small-scale batch …

Low-Cost Solid State Nanopore Biosensing Technology Towards Early Disease Detection, Julian Bello

Theses and Dissertations

Solid-state nanopore based biosensors are cost effective, high-throughput engines for single molecule detection of biomolecules, which is useful for detecting epigenetic modifications on DNA; one of these being the potentially cancerous hypo, or hypermethylation of CpG islands. Despite its immense potential in the realm of disease diagnostics, nanopore detection as it stands faces various limitations that inhibit it from widespread commercial use. These include the complex method of solid-state nanopore fabrication, fast DNA translocations through the pore causing poor resolution, and poor signal to noise ratio. The following work aims to improve the efficacy of the solid-state nanopore biosensing platform …

Investigation On Nanoparticle Based Combination Therapy For Targeted Cancer Treatment, Muhammad Raisul Abedin

Doctoral Dissertations

“The current treatment methods in cancer are associated with toxicity in healthy tissues, partial therapeutic response, drug resistance and finally recurrence of the disease. The cancer drugs are challenged by non-specific binding, undesired toxicity in healthy cells, low therapeutic index and finally poor therapeutic outcome. In this work, a targeted nanoscale therapeutic system Antibody Drug Nanoparticle (ADN) was engineered to selectively inhibit the breast cancer cell growth with reduced toxicity in healthy cells. The ADNs were designed by synthesizing rod shaped anoparticles using pure chemotherapeutic drug and covalently conjugating a therapeutic monoclonal antibody (mAb) on the surface of the drug …

Using Strontium Coated Clay Nanoparticles For Bone Regeneration And Other Biomedical Applications, Anusha Elumalai

Doctoral Dissertations

The aim of this project is to coat halloysite nanotubes (HNTs) with strontium in an ecofriendly, simple, and non-expensive process. These particles, when doped in calcium phosphate cements (CPC), are predicted to increase the osteoconductive and antibacterial properties of three dimensional (3D) printed bone scaffolds.

The purpose of the 3D printed bone scaffolds is to assume the same function as the bones they are replacing but with several additional functionalities. These biomaterials will have the ability to be resorbed as new bone is formed. Due to inherent osteogenic factors and antibiotics released from doped HNTs during the reparative process, it …

Development Of Dual Functional Dna/Rna Nanostructures For Drug Delivery, Vibhav Amit Valsangkar

Legacy Theses & Dissertations (2009 - 2024)

In addition to the traditional biochemical functions, DNA and RNA have been increasingly studied as building blocks for the formation of various 2D and 3D nanostructures. DNA has emerged as a versatile building block for programmable self-assembly. DNA-based nanostructures have been widely applied in biosensing, bioimaging, drug delivery, molecular computation and macromolecular scaffolding. A variety of strategies have been developed to functionalize these nanostructures. The major advantage is that DNA is a very stable molecule and its base-pairing properties can be easily utilized to control and program the formation of desired nanostructures. In addition, some of these DNA/RNA nanostructures have …

Hierarchical Structure, Properties And Bone Mechanics At Macro, Micro, And Nano Levels, Farah Mohammed Ridha Abdulateef Hamandi

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This research focuses on the hierarchical structure of bone and associated mechanical properties at different scales to assess damage accumulation leading to premature failure, with or without instrumentation. In this work, an attempt was made to develop a framework of macro, micro, and nano damage accumulation models and implementing them to derive mechanical behavior of the bone. At macrolevel, retrospective evaluation of 313 subjects was conducted, and the damage of bone tissue was investigated with respect to subject demography including age, gender, race, body mass index (BMI), height and weight, and their role in initiating fracture. Experimental data utilized 28 …

Hierarchical Hybrid Materials From Flexible Fabric Substrates, Wenhu Wang

Browse all Theses and Dissertations

The goal of this project is to investigate fabrication approaches and structure-property relationships of porous and flexible hierarchical hybrid solids suitable for advanced surface-active devices. Multi-scale hierarchical carbon materials are being fabricated by strong covalent attachment of multiwall carbon nanotube(MWCNTs) arrays on flexible carbon fabric substrates in order to enhance the surface area per unit volume. This was done using chemical vapor deposition (CVD) after functionalizing the surface with a plasma-derived nano-oxide coating. Structural and chemical characterization is performed using scanning electron microscope(SEM), energy dispersive spectroscopy(EDS) and x-ray photoelectron spectroscopy(XPS). Surface area estimates have been made by building structural models …

Processing And Properties Of Multifunctional Two Dimensional Nanocomposites Based On Graphene Nano-Flakes, Mohammed K. Mohammed

Browse all Theses and Dissertations

The unique properties of graphene have directed researchers to study and characterize this new material. Graphene production and graphene based materials have been widely explored and developed in the past decade. Most research has aimed at developing scalable, environmentally friendly, and cheap procedures to produce defect-free graphene that can be used in various applications such as mechanical properties enhancement and multifunctional material. The challenge is processing such material on a scale suitable for engineering applications such as advanced photonics and advanced electronics. In this study, we investigate a new processing technique based on Langmuir-Blodgett (LB) Technique. We managed to produce …

Nanoscale Optical And Correlative Microscopies For Quantitative Characterization Of Dna Nanostructures, Christopher Michael Green

Boise State University Theses and Dissertations

Methods to engineer nanomaterials and devices with uniquely tailored properties are highly sought after in fields such as manufacturing, medicine, energy, and the environment. The macromolecule deoxyribonucleic acid (DNA) enables programmable self-assembly of nanostructures with near arbitrary shape and size and with unprecedented precision and accuracy. Additionally, DNA can be chemically modified to attach molecules and nanoparticles, providing a means to organize active materials into devices with unique or enhanced properties. One particularly powerful form of DNA-based self-assembly, DNA origami, provides robust structures with the potential for nanometer-scale resolution of addressable sites. DNA origami are assembled from one large DNA …