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Theses/Dissertations

2011

Biomedical Engineering and Bioengineering

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Full-Text Articles in Engineering

A Novel Device And Nanoparticle-Based Approach For Improving Diagnosis And Treatment Of Pelvic Inflammatory Disease, Natasha Faith Cover Dec 2011

A Novel Device And Nanoparticle-Based Approach For Improving Diagnosis And Treatment Of Pelvic Inflammatory Disease, Natasha Faith Cover

USF Tampa Graduate Theses and Dissertations

Pelvic Inflammatory Disease (PID) is one of the most common causes of morbidity in women. PID is a polymicrobial infection of the female reproductive tract, and is associated with pelvic pain, abnormal uterine bleeding, and tubal damage that can lead to ectopic pregnancies and infertility. It is curable but the effects of PID can be permanent if not properly diagnosed and treated. PID presents as a spectrum of disease and is often missed at early stages; even acute PID can be difficult to diagnose, as there is no single conclusive diagnostic test. Currently, PID is identified and treated syndromically because …


Strider, George Cummings, Brian Kreidle, Ricky Lee, Clark Steen Dec 2011

Strider, George Cummings, Brian Kreidle, Ricky Lee, Clark Steen

Mechanical Engineering

No abstract provided.


Effect Of Size Reduction Parameters In Pharmaceutical Manufacturing Process, Brian Breneman Dec 2011

Effect Of Size Reduction Parameters In Pharmaceutical Manufacturing Process, Brian Breneman

Biomedical Engineering

Within pharmaceutical manufacturing, size reduction is one of the most extensively used and vital unit operations. Size reduction in tablet production is achieved primarily through milling procedures, which allows for attaining product uniformity, optimizing product solubility, and improving bioavailability. Additionally, powders with a narrow range of size distribution can obviate problems in downstream processing as pertains to blending, compression, and coating as well as improve drug performance1. The purpose this study was to characterize the effect of various size reduction parameters as a result of the pharmaceutical milling process on a lactose wet granulation formulation and chemically active …


A Novel Free Form Femoral Cutting Guide, Wesley Andrew Underwood Dec 2011

A Novel Free Form Femoral Cutting Guide, Wesley Andrew Underwood

Masters Theses

Knee arthoplasty is a common procedure that requires the removal of damaged bone and cartilage from the distal femur so that a reconstructive implant may be installed. Traditionally, a five planar resection has been accomplished with a universal cutting box and navigated with either metal jigs or optically tracked computer navigation systems. Free form, or curved, resections have been made possible with surgical robots which control the resection pathway and serve as the navigation system. The free form femoral cutting guide serves as a non powered framework to guide a standard surgical drill along an anatomically defined pathway, resulting in …


A Computational Investigation For Potential Improvements, Angela Grujicic Dec 2011

A Computational Investigation For Potential Improvements, Angela Grujicic

All Theses

Mild traumatic brain injury (mTBI), colloquially known as a concussion, is the most common injury in modern wars. This domination of mTBI is hypothesized to be due to a combination of unconventional explosives and better protection and care of the patients, increasing survivability. While the majority of the body is covered in armor, the head is left relatively unprotected. The current Advanced Combat Helmet (ACH) has been designed to protect the warfighter against ballistic impacts and impacts against a hard surface, with little to no regard to blast loading. Polyureas, a class of microsegregated, elastomeric copolymers, has been shown to …


'Exploring The Potential Of Using Antimicrobial Peptides And Copper Nanoparticles In Tackling Surgical Site Infections', Sriram Sankar Dec 2011

'Exploring The Potential Of Using Antimicrobial Peptides And Copper Nanoparticles In Tackling Surgical Site Infections', Sriram Sankar

All Theses

Postoperative wound site infections remain a major source of illness with approximately 500,000 infections per year, among an estimated 27 million surgical procedures. Such infections account for approximately one quarter of the estimated 2 million nosocomial infections in the United States which causes about 90,000 deaths each year. More than 70% of the bacteria that causes such infections are resistant to at least one of the antibiotics and result in longer hospitalization; besides requiring second option treatments that may be less effective, more toxic and expensive. Hence, there is a frenetic search for alternatives and in this regard, antimicrobial peptides …


Impedance-Based Detection Of Tissue Using A Multi-Electrode Device, Shane Killian Fleshman Dec 2011

Impedance-Based Detection Of Tissue Using A Multi-Electrode Device, Shane Killian Fleshman

Master's Theses

Melanoma skin cancer is the abnormal growth of the melanocytes – the pigmented cells located in the epidermis. The current gold standard diagnostic technique for determining whether a lesion is cancerous involves subjectively examining suspicious lesions and performing an invasive biopsy to confirm melanoma. This method may neglect some lesions or cause scarring from biopsies that turn out to be benign. Thus, impedance-based detection using a multi-electrode device was investigated as a noninvasive technique to diagnose melanoma skin cancer. The multi-electrode device was designed with 8 equally spaced Ag/AgCl electrodes surrounding one central electrode at a 5 mm radius. The …


Design And Fabrication Of Nanofluidic Systems For Biomolecule Characterizations, Orain Ansel Hibbert Dec 2011

Design And Fabrication Of Nanofluidic Systems For Biomolecule Characterizations, Orain Ansel Hibbert

Graduate Theses and Dissertations

Nanofluidic channel systems were designed and fabricated by combining MEMS microfabrication with AFM nanolithography. In the fabrication process flow, photolithography was first utilized to pattern microfluidic channels and reservoirs on a 4" Pyrex substrate. Subsequently, atomic force microscopy (AFM) based nanolithography was used to mechanically fabricate nanochannels to connect the microreservoirs which formed the inlet and outlet of the nanofluidic system. A Tap190 Diamond-Like Carbon (DLC) AFM tip with a force constant of 48 N/m and a radius of less than 15 nm was used as the nanolithography tool. The resultant nanochannel ranges from 20 to 80 µm in length …


Impact Of Collateral Enlargement On Smooth Muscle Phenotype, Alexander Jerome Bynum Dec 2011

Impact Of Collateral Enlargement On Smooth Muscle Phenotype, Alexander Jerome Bynum

Master's Theses

Peripheral Artery Disease is a very serious disease characterized by an arterial occlusion due to atherosclerotic plaques. In response to an arterial occlusion, arteriogenesis occurs, causing smooth muscle cells to transition from a contractile to synthetic state. Also following an arterial occlusion, functional impairment was seen in the collateral circuit. An immunofluorescence protocol was developed in order to assess the impact of collateral enlargement (arteriogenesis) on smooth muscle phenotype at various time points. Smooth muscle α-actin was used to mark all smooth muscle cells, Ki-67 was used to label proliferating smooth muscle cells, and a fluorescent nuclear stain was used …


Implementation Of Medicinal Leech Preparation To Investigate The Connection Between The Motor Neuron And Muscle Fiber Via Sharp Electrode Electrophysiology, Chandra Nikole Miller Dec 2011

Implementation Of Medicinal Leech Preparation To Investigate The Connection Between The Motor Neuron And Muscle Fiber Via Sharp Electrode Electrophysiology, Chandra Nikole Miller

Master's Theses

There are forty registered organophosphates in the United States and they range from pesticides and insecticides to nerve agents or neurotoxins such as sarin. Organophosphates (OP’s) have been used in chemical warfare for years and tend to lead to death due to an attack on the nervous system. Chemical assays and mass microscopy have been used to assess the concentration of OP’s in the environment, but both methods require the body to metabolize the OP first, which can be detrimental to the victim. It is crucial to come up with a method to investigate and detect these neurotoxins without causing …


Seasonal And Anatomical Variation In Compact Bone Remodeling In The Adult Sheep, Joseph Calcagno Dec 2011

Seasonal And Anatomical Variation In Compact Bone Remodeling In The Adult Sheep, Joseph Calcagno

Master's Theses

ABSTRACT

SEASONAL AND ANATOMICAL VARIATION IN COMPACT BONE REMODELING IN THE ADULT SHEEP

Joseph Calcagno

In order to determine whether ovine compact bone is suitable for study of osteoporosis, the remodeling parameters of the untreated animal must be fully characterized. Ovine compact bone is an attractive large animal model due to its similarities in size and bone remodeling to humans. However hormonal, exercise, and dietary changes due to seasonal changes can cause treatment effects to be hidden or superimposed on existing changes in the bone. In order to determine if any seasonal or anatomical variation occurred in the compact bone …


Interfacial Force Field Parameterization Using The Dual Force Field Charmm Program For The Accurate Simulation Of Peptide-Surface Interaction, Nadeem Vellore Dec 2011

Interfacial Force Field Parameterization Using The Dual Force Field Charmm Program For The Accurate Simulation Of Peptide-Surface Interaction, Nadeem Vellore

All Dissertations

Protein adsorption to solid material surfaces is a complex phenomenon and various factors play a role in controlling these processes. Inherent limitations to understand these biological interactions using experimental approaches alone have led to the possibility of exploring these systems using computational molecular simulation methodologies. Before confidence can be placed on these computational protocols, however, rigorous validation of the applicability of these methods to accurately represent protein adsorption processes is needed. In this research, we evaluated the use of all-atom empirical force field (FF) based simulations using the CHARMM simulation program and FF for the study of peptide adsorption processes …


Development Of A Dynamic In Vitro Model Of A Stented Blood Vessel To Evaluate The Effects Of Stent Strut Material Selection And Surface Coating On Smooth Muscle Cell Response, Bradley Winn Dec 2011

Development Of A Dynamic In Vitro Model Of A Stented Blood Vessel To Evaluate The Effects Of Stent Strut Material Selection And Surface Coating On Smooth Muscle Cell Response, Bradley Winn

All Dissertations

Cardiovascular disease is the leading cause of mortality in The United States and Europe, accounting for approximately half of all deaths. The most common form of cardiovascular disease is atherosclerosis, which is characterized by the formation of fatty atheromatous plaques that can grow to occlude the vessel lumen, thus causing ischemia distal to the occlusion. This is commonly treated using balloon angioplasty, which is usually done in conjunction with the deployment of a stent. Stent deployment helps hold the vessel open following the local injury caused by balloon inflation and prevents elastic recoil and subsequent negative remodeling. Stenting has been …


Electrical Coupling Between Micropatterned Cardiomyocytes And Stem Cells, Zhen Ma Dec 2011

Electrical Coupling Between Micropatterned Cardiomyocytes And Stem Cells, Zhen Ma

All Dissertations

To understand how stem cells functionally couple with native cardiomyocytes is crucial for cell-based therapies to restore the loss of cardiomyocytes that occurs during heart infarction and other cardiac diseases. Due to the complexity of the in vivo environment, our knowledge of cell coupling is heavily dependent on cell-culture models. However, conventional in vitro studies involve undefined cell shapes and random length of cell-cell contacts in addition to the presence of multiple homotypic and heterotypic contacts between interacting cells. Thus, it has not been feasible to study electrical coupling corresponding to isolated specific types of cell contact modes.
To address …


Characterizing Mechanical Heterogeneity In Cardiovascular Cells, Sandra Deitch Dec 2011

Characterizing Mechanical Heterogeneity In Cardiovascular Cells, Sandra Deitch

All Dissertations

Most tissue-level mechanical models assume homogeneous mechanical properties within a single cell type. However, measurements of cellular mechanical properties show large variability in whole-cell mechanical properties between cells from a single population. This heterogeneity has been observed in many cell populations and with several measurement techniques but the sources are not yet fully understood. Cell mechanical properties are directly related to the composition and organization of the cytoskeleton, which is physically coupled to neighboring cells through adherens junctions and to underlying matrix scaffolds through focal adhesion complexes. As such, we believe that this high level of heterogeneity can be attributed …


Comparative Study On Posture And Its Influences On Horizontal Ground Reaction Forces Generated By Muscles: Implications For Crouch Gait, Hoa Xuan Hoang Dec 2011

Comparative Study On Posture And Its Influences On Horizontal Ground Reaction Forces Generated By Muscles: Implications For Crouch Gait, Hoa Xuan Hoang

Masters Theses

Crouch gait decreases walking efficiency due to the increased knee and hip flexion during the stance phase of gait. Crouch gait is generally considered to be disadvantageous for patients with cerebral palsy; however, a crouched posture may afford biomechanical advantages that lead some patients to adopt a crouch gait.

To investigate one possible advantage of crouch gait, a musculoskeletal model created in OpenSim was placed in 15 different postures from upright to severe crouch during initial, middle, and final stance of the gait cycle. A series of optimizations were performed for each posture to maximize ground reaction forces for the …


Designing Predictive Mathematical Models For The Metabolic Pathways Associated With Polyhydroxybutyrate Synthesis In Escherichia Coli, Angela Dixon Dec 2011

Designing Predictive Mathematical Models For The Metabolic Pathways Associated With Polyhydroxybutyrate Synthesis In Escherichia Coli, Angela Dixon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Plastics are a versatile and widely used material. However, traditional plastics are derived from petrochemicals and are not biodegradable. Polymers synthesized from microorganisms that have similar properties to plastic are potential biodegradable replacements. The objective of this project is to use mathematical modeling as a tool to engineer a strain of bacteria optimized for the production of bio-plastics.

Production costs can be reduced by using a bacterial strain specifically optimized for bio-plastic production. By reducing production costs, bio-plastics will be able to commercially compete with traditional plastics. Society will benefit as bio-plastics replace traditional plastics. Fossil fuels will not be …


Tissue Engineering An Acellular Bioresorbable Vascular Graft To Promote Regeneration, Patricia Wolfe Nov 2011

Tissue Engineering An Acellular Bioresorbable Vascular Graft To Promote Regeneration, Patricia Wolfe

Theses and Dissertations

Tissue engineering is an interdisciplinary field that aims to restore, maintain, or improve diseased or damaged tissues. Electrospinning has become one of the most popular means to fabricate a scaffold for various tissue engineering applications as the process is extremely versatile and inexpensive. The ability for electrospinning to consistently create nanofibrous structures capable of mimicking the native extracellular matrix (ECM) is the basis behind why this technique is so successful in tissue engineering. Cardiovascular disease has been the leading cause of death in the United States for over 100 years, and because of this, the need for coronary artery replacements …


Analysis Of 26" And 29" Wheel Mountain Bikes, Jacob Publicover, David Wang, Alex Warring Nov 2011

Analysis Of 26" And 29" Wheel Mountain Bikes, Jacob Publicover, David Wang, Alex Warring

Mechanical Engineering

There are two major mountain bike diameter wheel sizes on the market today, but with two different options, one would naturally wonder, “Which one is best?” During the course of this project, 26 and 29 inch wheel mountain bikes were analyzed quantitatively and qualitatively, using a variety of test methods, from heart rate monitoring to serial data acquisition to computer simulated analyses; static, dynamic, theoretical, and subjective tests were administered.


The Effect Of Biomechanical And Biochemical Factors On Endothelial Cells: Relevance To Atherosclerosis, Qiuquan Guo Oct 2011

The Effect Of Biomechanical And Biochemical Factors On Endothelial Cells: Relevance To Atherosclerosis, Qiuquan Guo

Electronic Thesis and Dissertation Repository

Microscale technologies create great opportunities for biologists to unveil cellular or molecular mechanisms of complex biological processes. Advanced measuring techniques, like atomic force microscope (AFM), allow detecting and controlling biological samples at high spatial and temporal resolution. Further integration with microsystems, such as microfluidic platforms, gives the ability to get detailed insight into basic biological phenomena. Highly integrated microdevices show great promise for biomedical research and potential clinical applications.

It is hypothesized that biomechanical factors play a significant role in the development of vascular diseases like atherosclerosis. To explore effects of biomechanical and biochemical stimuli on endothelial cells (ECs), AFM, …


Comparison Of An Ankle-Foot-Orthosis And Neuroprosthesis During Level And Non-Level Walking For Individuals Post-Stroke, Michelle Beverly Gallagher Oct 2011

Comparison Of An Ankle-Foot-Orthosis And Neuroprosthesis During Level And Non-Level Walking For Individuals Post-Stroke, Michelle Beverly Gallagher

Master's Theses (2009 -)

This study used gait analysis to compare the efficacy of the two foot drop treatments (ankle-foot-orthosis and neuroprosthesis) and to contrast the stimulation control of the two different neuroprosthesis sensors during level and non-level ambulation of post-stroke individuals.

Eight subjects completed two gait analysis sessions, once while using a study-provided articulated AFO and the other while using a WalkAide. After four weeks of acclimation to the device, each subject performed two minute walking trials on a level, inclined and declined treadmill. Kinematic and heart rate data were collected for all sessions. Plantar pressure and WalkAide tilt, heel loading, and stimulation …


Improving Cardiovascular Stent Design Using Patient-Specific Models And Shape Optimization, Timothy J. Gundert Oct 2011

Improving Cardiovascular Stent Design Using Patient-Specific Models And Shape Optimization, Timothy J. Gundert

Master's Theses (2009 -)

Stent geometry influences local hemodynamic alterations (i.e. the forces moving blood through the cardiovascular system) associated with adverse clinical outcomes. Computational fluid dynamics (CFD) is frequently used to quantify stent-induced hemodynamic disturbances, but previous CFD studies have relied on simplified device or vascular representations. Additionally, efforts to minimize stent-induced hemodynamic disturbances using CFD models often only compare a small number of possible stent geometries. This thesis describes methods for modeling commercial stents in patient-specific vessels along with computational techniques for determining optimal stent geometries that address the limitations of previous studies.

An efficient and robust method was developed for virtually …


Role Of Ammonia In The Activiation Of Methanol Dehydrogenase/Cytochrome C(L) Enzyme, Ancy Kunjumon Oct 2011

Role Of Ammonia In The Activiation Of Methanol Dehydrogenase/Cytochrome C(L) Enzyme, Ancy Kunjumon

Doctoral Dissertations

Recent advancement in enzyme catalysis has opened ways to design efficient biocatalysts, bio-sensors and bio-fuel cells. An in-depth knowledge about the mechanism of the reaction taking place within the enzymes is of great importance to achieve these goals. In this dissertation, various computation methods are applied to investigate the mechanism behind enzyme catalysis in the presence of compounds called activators.

Methanol dehydrogenase (MDH) is a well-known bio-catalyst that can oxidize excess of methanol from the environment to formaldehyde. The enzyme works well within the bacterial environment, but under in vitro, it loses activity. Ammonia is used as an activator …


Passive Micromixers And Organic Electrochemical Transistors For Biosensor Applications, Senaka Krishna Kanakamedala Oct 2011

Passive Micromixers And Organic Electrochemical Transistors For Biosensor Applications, Senaka Krishna Kanakamedala

Doctoral Dissertations

Fluid handling at the microscale has greatly affected different fields such as biomedical, pharmaceutical, biochemical engineering and environmental monitoring due to its reduced reagent consumption, portability, high throughput, lower hardware cost and shorter analysis time compared to large devices. The challenges associated with mixing of fluids in microscale enabled us in designing, simulating, fabricating and characterizing various micromixers on silicon and flexible polyester substrates. The mixing efficiency was evaluated by injecting the fluids through the two inlets and collecting the sample at outlet. The images collected from the microscope were analyzed, and the absorbance of the color product at the …


Quantitative Evaluation Of Redox Processes In Intact Rat Lungs And Endothelial Cells And The Effect Of Hyperoxia, Zhuohui Gan Oct 2011

Quantitative Evaluation Of Redox Processes In Intact Rat Lungs And Endothelial Cells And The Effect Of Hyperoxia, Zhuohui Gan

Dissertations (1934 -)

A common initial treatment of hypoxemia in patients with lung failure secondary to acute lung injury (e.g., adult respiratory distress syndrome) is oxygen (O2) therapy (hyperoxia). However, prolonged O2 therapy causes lung O2 toxicity, which can further impair lung functions. The rat model of lung O2 toxicity replicates key features of human lung O2 toxicity. In addition, rats develop tolerance or susceptibility to 100% O2 by pre-exposing them to 85% O2 (hyper-85) or 60% O2 (hyper-60) for 7 days, respectively. Therefore, the long-term objectives of this study are to elucidate mechanisms …


Application Of Engineered Porosity And Modified Effective Moduli To The Design Of Orthopaedic Implants, John Anthony Choren Oct 2011

Application Of Engineered Porosity And Modified Effective Moduli To The Design Of Orthopaedic Implants, John Anthony Choren

Dissertations (1934 -)

Commercially available orthopaedic implants have a bending stiffness (flexural rigidity) that is at least 10 times greater than cortical bone. Effects of this stiffness mismatch have been extensively studied relative to total hip arthroplasty (THA). Clinical experience with THA has shown that stiffness mismatch is the primary cause of accelerated bone resorption due to the stress shielding, resulting in sub-optimal bone loading, aseptic loosening and inadequate bone support for a future revision implant.

Attempts to incorporate design features that reduce the flexural rigidity of implants have yielded inconsistent results or failures due to biomaterial incompatibilities and practical manufacturing complications. The …


Investigation Of Spatio-Temporal Effects Of Fmri Visual Field Mapping Techniques On V1, John J. Janik Oct 2011

Investigation Of Spatio-Temporal Effects Of Fmri Visual Field Mapping Techniques On V1, John J. Janik

Dissertations (1934 -)

Blood oxygenation level dependent functional magnetic resonance imaging has been used extensively for mapping the representation of the visual field within the human brain. Visual field mapping using fMRI has been used clinically to assess patients with cortical pathology and to plan surgical treatment impacting the visual system. The accuracy of fMRI-based visual field mapping methods needs to be better understood for clinical use. This accuracy can be important for presurgical mapping of brain function near a tumor resection site since inaccurate rendition of the underlying neural function could lead to inappropriate resection of viable brain tissue. The most widely …


Incorporating The Aortic Valve Into Computational Fluid Dynamics Models Using Phase-Contrast Mri And Valve Tracking, David C. Wendell Oct 2011

Incorporating The Aortic Valve Into Computational Fluid Dynamics Models Using Phase-Contrast Mri And Valve Tracking, David C. Wendell

Dissertations (1934 -)

The American Heart Association states about 2% of the general population have a bicuspid aortic valve (BAV). BAVs exist in 80% of patients with aortic coarctation (CoA) and likely influences flow patterns that contribute to long-term morbidity post-surgically. BAV patients tend to have larger ascending aortic diameters, increased risk of aneurysm formation, and require surgical intervention earlier than patients with a normal aortic valve. Magnetic resonance imaging (MRI) has been used clinically to assess aortic arch morphology and blood flow in these patients. These MRI data have been used in computational fluid dynamics (CFD) studies to investigate potential adverse hemodynamics …


Protective Effects Of Milk Phospholipids Against Uv Photodamage In Human Skin Equivalents, Zyra Achay Sep 2011

Protective Effects Of Milk Phospholipids Against Uv Photodamage In Human Skin Equivalents, Zyra Achay

Master's Theses

The ultraviolet (UV) spectrum has been known to cause damage to skin in varying degrees. UVB radiation (290-320 nm) in particular, has been proven to be highly mutagenic and carcinogenic in many animal experiments compared to either UVA or UVC. The alarming rate of increase in skin cancer incidence has prompted many investigators to pursue other alternatives to sunscreens including changes in lifestyle habits and dietary consumption in order to boost our efforts in tackling this widespread disease. Previous studies employing confocal reflectance, MTT assay and histology suggest that milk phospholipids may possess protective properties against UVB-mediated damage but the …


Improved Manufacturing Methods Of Bovine Femur Samples For Ultrasonic Testing And Assessment Of Materials Through Contract Angle Measurement, Kevin Mathew Lopez Galang Sep 2011

Improved Manufacturing Methods Of Bovine Femur Samples For Ultrasonic Testing And Assessment Of Materials Through Contract Angle Measurement, Kevin Mathew Lopez Galang

Biomedical Engineering

At California Polytechnic State University of San Luis Obispo (Cal Poly), the Biomedical Engineering department (BMED) requires its students to take the course listed as “BMED 420: Principles of Biomaterial Designs.” BMED 420 has a required laboratory section every week throughout the duration of the course that is meant to be a supplemental tool for learning. During the lab sections, students perform experiments and exercises that are currently being implemented in the industry. Despite accuracy of the methods and experiments relative to their use in the industry, there is always room for improvement. The objective of this project will illustrate …