Engineering Commons^™

Protocol Guided Trace Analysis For Post-Silicon Debug Under Limited Observability, Yuting Cao Cao

USF Tampa Graduate Theses and Dissertations

This thesis considers the problem of reconstructing system level behavior of an SoC design from a partially observed signal trace. Solving this problem is a critical activity in post-silicon validation, and currently depends primarily on human creativity and insights. In this thesis, we provide algorithms to automatically infer system level flows from incomplete, ambiguous, and noisy trace data. This thesis also demonstrates the approach on two case studies, a multicore SoC model developed within the within the GEM5 environment, and a cycle accurate register transfer level model of a similar SoC design.

Effect Of Void Fraction On Transverse Shear Modulus Of Advanced Unidirectional Composites, Jui-He Tai

USF Tampa Graduate Theses and Dissertations

In composite materials, transverse shear modulus is a critical moduli parameter for designing complex composite structures. For dependable mathematical modeling of mechanical behavior of composite materials, an accurate estimate of the moduli parameters is critically important as opposed to estimates of strength parameters where underestimation may lead to a non-optimal design but still would give one a safe one.

Although there are mechanical and empirical models available to find transverse shear modulus, they are based on many assumptions. In this work, the model is based on a three-dimensional elastic finite element analysis with multiple cells. To find the shear modulus, …

Development Of A Decentralized And Off-Grid Anaerobic Membrane Bioreactor (Anmbr) For Urban Sanitation In Developing Countries, Robert Alonso Bair

USF Tampa Graduate Theses and Dissertations

Urbanization has led to rapid and uncontrolled growth of informal housing settlements in many developing countries. As most slum growth is unplanned, these areas tend to lack basic infrastructure including sanitation. The high user rates, lack of water and electricity infrastructure, space limitations, and scant financial resources make sanitation provision a major challenge in slums. As most decentralized sanitation technologies fail when applied in these environments, better technologies need to be developed that cater to the specific needs of slum dwellers. One promising technology, the membrane bioreactor (MBR) is routinely used in developed countries when a compact and resilient treatment …

Mechanotransduction Of Matrix Stiffness Regulates Cell Adhesion Strength: An Analysis Using Biomaterial Surfaces With Tunable Mechanical And Chemical Properties, Asma Sharfeddin Sharfeddin

USF Tampa Graduate Theses and Dissertations

Cells have the ability to sense the rigidity of the extracellular matrix which directly affects the control of cellular functions in development, wound healing and malignant transformation. Polydimethylsiloxane elastomers are useful model biomaterials for mechanotransduction studies because they possess several advantages including ease of fabrication, tunable elasticity and modifiable surface chemistry. In this work, we are investigating the influence of matrix stiffness on adhesion strength and the mechanosensory structures that regulate these processes. In addition, the effect of surface modifications to this elastic substrate system on other physical properties such as local stiffness and topography will be analyzed. Based on …

Automated Device To Measure Slurry Properties In Drilled Shafts, Miles Patrick Mullins

USF Tampa Graduate Theses and Dissertations

Slurry is the fluid within a drilled excavation that is introduced when an excavation is deeper than the water table or where additional stability is needed for loose sandy dry soils. Although construction practices vary greatly throughout the country and the world, slurry levels should be maintained above the existing ground water level by a suitable margin. The most widely used slurry type is mineral slurry formed by mixing dry clay powder with water; either bentonite or attapulgite powder may be used (attapulgite being used in saline water conditions). Regardless of whether the slurry material is mineral, polymer or natural, …

Differential Association Of Vitronectin And Fibronectin With Glass And Electrospun Fibers Of A Poly (D-Lysine) /Poly (Acrylic Acid), Syed Muhammad Sohaib Zafar Zafar

USF Tampa Graduate Theses and Dissertations

Proteins represent major constituent of the extracellular matrix which plays an important role in the formation, maintenance and remodeling of tissues, this project focuses on adsorption of two specific serum proteins fibronectin (FN) and vitronectin (VTN) responsible for mediating cell matrix interaction through integrin binding, tripeptide Arg-Gly-Asp (RGD) sequence found in these protein features are recognized by αβV₃ integrin which ultimately helps in clot formation.

Computational Code For Optimization Of Thermal Treatment Of Fine Grained Soils As A Method Of Expediting Their Load Induced Consolidation, Radhavi Abeysiridara Samarakoon

USF Tampa Graduate Theses and Dissertations

Construction in soft soils has been a challenging task for engineers due to the excessive time taken for dissipation of construction induced pore water pressure and the ensuing postconstruction settlement. Use of vertical drains has proven to be an effective and economical method for soft ground improvement and hence extensive research has been carried out to further improve its efficiency. Effect of temperature on radial consolidation is one aspect of such research among many others that have been pursued.

Elevated temperature certainly has a pronounced effect on the hydraulic conductivity due to the reduction it causes in the viscosity of …

Enforcing Security Policies On Gpu Computing Through The Use Of Aspect-Oriented Programming Techniques, Bader Albassam

USF Tampa Graduate Theses and Dissertations

This thesis presents a new security policy enforcer designed for securing parallel computation on CUDA GPUs. We show how the very features that make a GPGPU desirable have already been utilized in existing exploits, fortifying the need for security protections on a GPGPU. An aspect weaver was designed for CUDA with the goal of utilizing aspect-oriented programming for security policy enforcement. Empirical testing verified the ability of our aspect weaver to enforce various policies. Furthermore, a performance analysis was performed to demonstrate that using this policy enforcer provides no significant performance impact over manual insertion of policy code. Finally, future …

Electrospinning Of Polymeric Solutions Using Opuntia Ficus-Indica Mucilage And Iron Oxide For Nanofiber Membranes For Treating Arsenic Contaminated Water, Venkatesh Eppili

USF Tampa Graduate Theses and Dissertations

Water is the essential part of every organism and it is also a vital constituent of healthy living and diet. Unfortunately water contamination over the past decade has increased dramatically leading to various diseases. As technology advances, we are detecting many pollutants at smaller levels of concentrations. Arsenic (As) is one of those major pollutants, and Arsenic poisoning is a condition caused due to excess levels of arsenic in the body. The main basis for Arsenic poisoning is from ground water which naturally contains high concentrations of arsenic. A case study from 2007 states that over 137 million people in …

A Life Cycle Assessment Of A Uranium Mine In Namibia, Janine Lambert

USF Tampa Graduate Theses and Dissertations

Uranium mining and nuclear power is a controversial topic as of late, especially in light of the recent Fukushima event. Although the actual use of nuclear fuel has minimal environmental impact, its issues come at the very beginning and end of the fuel’s life cycle in both the mining and fuel disposal process. This paper focuses on a life cycle analysis (LCA) of uranium mine in the desert nation of Namibia in Southern Africa. The goal of this LCA is to evaluate the environmental effects of uranium mining. The LCA focuses on water and energy embodiment such that they can …

Application And Analysis Of Asymmetrical Hot And Cold Stimuli, Ahmad Manasrah

USF Tampa Graduate Theses and Dissertations

The human body has a unique mechanism for perceiving surrounding temperatures. When an object is in contact with the skin, we do not feel its temperature. Instead, we feel the temperature change that is caused on our skin by that object. The faster the heat is transferred, the more intense the thermal sensation is. In this dissertation, a new dynamic thermal display method, where different rates of warm and cold are applied on the skin to generate a unique sensation, is presented. The new method can be related in a wide range of applications including thermal haptics and virtual reality. …

Oversampling Methods For Imbalanced Dataset Classification And Their Application To Gynecological Disorder Diagnosis, Iman Nekooeimehr

USF Tampa Graduate Theses and Dissertations

In many applications, the dataset for classification may be highly imbalanced where most of the instances in the training set may belong to some of the classes (majority classes), while only a few instances are from the other classes (minority classes). Conventional classifiers will strongly favor the majority class and ignore the minority instances. The imbalance problem can occur in both binary data classification and also in ordinal regression. Ordinal regression is a supervised approach for learning the ordinal relationship between classes. Extensive research has been performed for addressing imbalanced datasets for binary classification; however, current methods do not address …

Tunable Nano-Delivery System For Cancer Treatment: A New Approach For Targeted Localized Drug Delivery, Rana Falahat

USF Tampa Graduate Theses and Dissertations

Localized drug delivery systems have been widely studied as potential replacements for conventional chemotherapy with the capability of providing sustained and controlled drug release in specific targeted sites. They offer numerous benefits over conventional chemotherapy such as enhancing the stability of embedded drugs and preserving their anticancer activity, providing sustained and controlled drug release in the tumor site, reducing toxicity and diminishing subsequent side effects, minimizing the drug loss, averting the need for frequent administrations, and minimizing the cost of therapy.

The aim of this study is to develop a localized drug delivery system with niosomes embedded in a chitosan …

Preparation And Characterization Of Van Der Waals Heterostructures, Horacio Coy Diaz

USF Tampa Graduate Theses and Dissertations

In this dissertation different van der Waals heterostructures such as graphene-MoS₂ and MoTe₂-MoS₂ were prepared and characterized. In the first heterostructure, polycrystalline graphene was synthesized by chemical vapor deposition and transferred on top of MoS₂ single crystal. In the second heterostructure, MoTe₂ monolayers were deposited on MoS₂ by molecular beam epitaxy.

Characterization of graphene-MoS₂ heterostructures was conducted by spin and angle resolve spectroscopy which showed that the electronic structure of the bulk MoS₂ and graphene in this van der Waals heterostructures is modified. For MoS₂ underneath the graphene, a band …

Rule-Based Risk Monitoring Systems For Complex Datasets, Mona Haghighi

USF Tampa Graduate Theses and Dissertations

In this dissertation we present rule-based machine learning methods for solving problems with high-dimensional or complex datasets. We are applying decision tree methods on blood-based biomarkers and neuropsychological tests to predict Alzheimer’s disease in its early stages. We are also using tree-based methods to identify disparity in dementia related biomarkers among three female ethnic groups. In another part of this research, we tried to use rule-based methods to identify homogeneous subgroups of subjects who share the same risk patterns out of a heterogeneous population. Finally, we applied a network-based method to reduce the dimensionality of a clinical dataset, while capturing …

Impact Of Sludge Layer Geometry On The Hydraulic Performance Of A Waste Stabilization Pond, Faissal Romaric Ouedraogo

USF Tampa Graduate Theses and Dissertations

Improving the hydraulic performance of waste stabilization ponds (WSPs) is an important management strategy to not only ensure protection of public health and the environment, but also to maximize the potential reuse of valuable resources found in the treated effluent. To reuse effluent from WSPs, a better understanding of the factors that impact the hydraulic performance of the system is needed. One major factor determining the hydraulic performance of a WSP is sludge accumulation, which alters the volume of the pond.

In this study, computational fluid dynamics (CFD) analysis was applied to investigate the impact of sludge layer geometry on …

Biophysical Characterization And Theoretical Analysis Of Molecular Mechanisms Underlying Cell Interactions With Poly(N-Isopropylacrylamide) Hydrogels, Michael C. Cross

USF Tampa Graduate Theses and Dissertations

So-called, “Dynamic biomaterials” comprised of stimuli-responsive hydrogels are useful in a wide variety of biomedical applications including tissue engineering, drug delivery, and biomedical implants. More than 150,000 peer-reviewed articles (as of 2016) have been published on these materials, and more specifically, over 100,000 of these are on the most widely studied, poly(N-isopropylacrylamide). This thermoresponsive polymer in a crosslinked hydrogel network undergoes a large volume phase transition (𝑉/𝑉₀ ~ 10 − 100) within a small temperature range (𝑇 ~ 1 − 3𝐾) making it particularly useful for tissue engineering applications because of the ability to control the topographical configuration of …

The Development Of A Prosthetic Training Software For Upper Limb Amputees, Tyler Kayne Sullins

USF Tampa Graduate Theses and Dissertations

The purpose of this study was to develop an intuitive software that aids in the field of prosthetic training and rehabilitation by creating an individualized visualization of joint angles. This software is titled “the prosthetic training software (PTS) for individualized joint angle representation”, and it enables the individualized portrayal of predicted or pre-recorded joint angles. The PTS is an intuitive program for clinicians and prosthesis users that produces an animation of a virtual avatar reflecting the user’s segment lengths and amputation for rehabilitation and training purposes.

The PTS consists of a graphical user interface (GUI) and a 3D visualization of …

Interaction Of Cementitious Systems With Chemical Admixtures, Natallia Shanahan

USF Tampa Graduate Theses and Dissertations

The use of supplementary cementitious materials (SCMs) in commercial construction have been increasing over the last several decades as climate change and sustainability has been gaining global attention. Incorporation of SCMs into concrete mixtures provides several environmental benefits. Since most SCMs are waste by-products of other industries, their use in concrete reduces waste disposal. Additionally, cements substitution with SCMs reduces the carbon footprint of the construction industry. Cement production generates large amounts of CO₂ emissions; the use of SCMs reduces the amount of cement in a concrete mixture thereby reducing emissions from its production.

In addition to SCMs, modern …

Sustainability At U.S. Urban Water Utilities: A Framework To Assess Key Attributes, Matthew Paul Ries

USF Tampa Graduate Theses and Dissertations

Urban water utilities in the United States face challenges due to a combination of external drivers. These include urbanization and population growth, which are stressing a system of aging infrastructure. Compliance with increasing regulations is also a challenge in a fiscally-constrained economic environment. A changing climate threatens infrastructure and past assumptions for water supply and quality. Urban utilities provide clean water and sanitation services to over 80% of the country’s population and its industrial centers. Therefore, the sustainability of these water utilities are crucial to the country’s and the public’s well-being.

New operating models are emerging for a “utility of …

Distributed Coordination And Control Of Renewable Energy Sources In Microgrids, Javad Khazaei Khazaei

USF Tampa Graduate Theses and Dissertations

Microgrid is an emerging technology in the eld of electrical engineering which employs the concept of Distributed Energy Resources (DERs) in order to generate electricity in a small sized power system. The main objectives of this dissertation are to: 1- design a new control for lower level control of DERs in microgrids, 2- implement distributed upper level control for DERs in microgrids and 3- apply analytical approaches in order to analyze DERs in microgrids. The control in each DER can be divided into two main categories: lower and upper level. Lower level control is the main objective of control in …

Waterproofing Shape-Changing Mechanisms Using Origami Engineering; Also A Mechanical Property Evaluation Approach For Rapid Prototyping, Andrew Jason Katz

USF Tampa Graduate Theses and Dissertations

My work has been focused on compliant mechanisms, origami engineering, and rapid prototyping. Two of the projects that I worked on were focused on compliant mechanisms and origami engineering. The similar goal of both of those projects was to create an origami membrane whose kinematics mimic that of an existing mechanism. The first project created an origami membrane to mimic the kinematics of a planar shape-changing mechanism. This mechanism was a square shaped unit-cell which could shear, compress, and expand in its own plane. In addition to waterproofing the mechanism, the first project also sought to optimize the dimensions of …

Droplet-Based Mechanical Actuator Utilizing Electrowetting Effect, Qi Ni

USF Tampa Graduate Theses and Dissertations

The goal of this work is to quantify the key design parameters such as the load capacity, actuation force, positioning repeatability, and reliability for droplet-based electrowetting actuators. Due to the fact that surface tension dominates gravity at both the mesoscale and microscale, droplet-based actuators can provide adequate force in manipulation tasks at those scales. Electrowetting, which uses an electric field to modulate the apparent surface tension of the liquid-ambient, provides a method to actuate droplets, which in turn transports the object carried by the droplet.

Most previous electrowetting actuation efforts have concentrated on manipulating droplets in a closed two-plate configuration. …

The Design And Testing Of A Novel Batch Photocatalytic Reactor And Photocatalyst, Shawn Sasser

USF Tampa Graduate Theses and Dissertations

With an ever-increasing human population, the importance in having sustainable energy resources is becoming increasingly evident, as the current energy habits have brought about massive atmospheric pollution in the form of CO₂ emissions, resulting in a rise in the average global temperature. To battle the effects of climate change, many alternative energy resources have been investigated. Among these, photocatalytic conversion of CO₂ to renewable hydrocarbon fuels such as methane and methanol is one of the most desirable, as it provides the opportunity to utilize the sun’s energy to convert CO₂ to renewable fuels. The work in this …

Nano-Photonic Waveguides For Chemical And Biomedical Sensing, Surya Venkatasekhar Cheemalapati

USF Tampa Graduate Theses and Dissertations

In this dissertation, advances in the fields of Photonics, and Plasmonics, and specifically, single cell analysis and waveguide sensing will be addressed. The first part of the dissertation is on Finite Difference Time Domain (FDTD) optimization and experimental demonstration of a nano-scale instrument that allows sensing at the cellular and subcellular levels. A new design of plasmonic coupler into a nanoscale waveguide is proposed and optimized using FDTD simulations. Following this, a subcellular nanoendoscope that can locally excite fluorescence in labelled cell organelles and collect the emitted fluorescent light for detailed spectrum analysis is fabricated and tested. The nanoendoscope has …

Graphene Quantum Dots-Based Drug Delivery For Ovarian Cancer Therapy, Yiru Qin

USF Tampa Graduate Theses and Dissertations

Ovarian cancer, one of the most dreadful malignancies of the female reproductive system, poses a lethal threat to women worldwide. In this dissertation, the objective was to introduce a novel type of graphene quantum dots (GQDs) based nano-sized drug delivery systems (DDS) for ovarian cancer treatment. As a starting point, the facile synthesis method of the GQDs was established. Subsequently, the targeting ligand,folic acid (FA), was conjugated to GQDs. Next, a FDA approved chemotherapeutic drug, Doxorubicin (DOX), was loaded to form the GQDs-FA-DOX nano-conjugation as the DDS. Moreover, the uptake profile and anti-cancer effect of the GQDs-FA-DOX were validated in …

Gait And Tremor Monitoring System For Patients With Parkinson’S Disease Using Wearable Sensors, Shyam Vignesh Perumal

USF Tampa Graduate Theses and Dissertations

Typically, a Parkinson’s disease (PD) patient would display instances of tremor and bradykinesia (slowness of movement) at an early stage of the disease and later develop gait disturbances and postural instability. So, it is important to measure the tremor occurrences in subjects to detect the onset of PD. Also, it is equally essential to monitor the gait impairments that the patient displays, as the order at which the PD symptoms appear in subjects vary from one to another.

The primary goal of this thesis is to develop a monitoring system for PD patients using wearable sensors. To achieve that objective, …

Renewable Energy Investment Planning And Policy Design, Alireza Ghalebani

USF Tampa Graduate Theses and Dissertations

In this dissertation, we leverage predictive and prescriptive analytics to develop decision support systems to promote the use of renewable energy in society. Since electricity from renewable energy sources is still relatively expensive, there are variety of financial incentive programs available in different regions. Our research focuses on financial incentive programs and tackles two main problem: 1) how to optimally design and control hybrid renewable energy systems for residential and commercial buildings given the capacity based and performance based incentives, and 2) how to develop a model-based system for policy makers for designing optimal financial incentive programs to promote investment …

Mining Dynamic Recurrences In Nonlinear And Nonstationary Systems For Feature Extraction, Process Monitoring And Fault Diagnosis, Yun Chen

USF Tampa Graduate Theses and Dissertations

Real-time sensing brings the proliferation of big data that contains rich information of complex systems. It is well known that real-world systems show high levels of nonlinear and nonstationary behaviors in the presence of extraneous noise. This brings significant challenges for human experts to visually inspect the integrity and performance of complex systems from the collected data. My research goal is to develop innovative methodologies for modeling and optimizing complex systems, and create enabling technologies for real-world applications. Specifically, my research focuses on Mining Dynamic Recurrences in Nonlinear and Nonstationary Systems for Feature Extraction, Process Monitoring and Fault Diagnosis. …

Design Exploration And Application Of Reversible Circuits In Emerging Technologies, Saurabh Kotiyal

USF Tampa Graduate Theses and Dissertations

The reversible logic has promising applications in emerging computing paradigms, such as quantum computing, quantum dot cellular automata, optical computing, etc. In reversible logic gates, there is a unique one-to-one mapping between the inputs and outputs. To generate a useful gate function, the reversible gates require some constant ancillary inputs called ancilla inputs. Also to maintain the reversibility of the circuits some additional unused outputs are required that are referred to as the garbage outputs. The number of ancilla inputs, the number of garbage outputs and quantum cost plays an important role in the evaluation of reversible circuits. Thus minimizing …