Digital Commons Network^™

Exploring The Effects Of Tree Roots On Infiltration Process, Nazife Onaral

Masters Theses

Effects of the root structures on soil infiltration dynamics are not clearly defined. Imaging the complex tree root structures and movement of water through the root ball is a challenging task to achieve without damaging the trees and roots by conventional methods. Commonly used methods are invasive, labor-intensive, and not easily accessible. Ground Penetrating Radar (GPR) has commonly been used to characterize soil profiles and it can be a reliable tool to map complex root structures with a novel high-resolution circular data collection technique. Electrical resistivity tomography (ERT) is another reliable geophysical method to image infiltration processes by the change …

“This Isn't Working For Me. Can We Do It A Different Way?" The Lived Experiences Of Geoscience Students With Learning Disabilities, Nina Morris

Masters Theses

The purpose of this exploratory qualitative study is to better understand the lived experiences of geoscience students with learning disabilities in their geoscience classes. Students with learning disabilities bring a unique perspective while also facing unique challenges in post-secondary education. In the literature, there is limited information on what support and teaching strategies are beneficial to this population. Undergraduate and graduate geoscience students who identify as having a learning disability from colleges and universities in the United States were recruited. Six students consented to participate in the study, and each completed a semi-structured interview. Semi-structured interviews were designed to prompt …

A Framework For Assessing The 4th Rank Dispersivity Tensor Under Anisotropic Axial Symmetries, Xiang Fan

Dissertations

Multi-dimensional expansion of the advection-dispersion equation necessitated the representation of dispersivity as a 4th rank tensor. This tensorial form of dispersivity has 81 terms in three-dimensions with a maximum of 36 independent terms that may be used to describe Fickian spreading of a dissolved contaminant plume according to intrinsic properties of a porous medium. The complexity of the 4th rank tensor has led to the common practice of simplifying the tensor to only 2 or 3 independent terms by assuming isotropic conditions, although isotropic porous media are uncommon in nature as many natural geologic systems exhibit pronounced anisotropy. A broad …

Remote Sensing Application For Landslide Detection: Monitoring Along Eastern Lake Michigan (Miami Park, Mi), Guzalay Sataer

Dissertations

I assessed the nature and spatial and temporal patterns of deformation over the Miami Park bluffs on the eastern margin of Lake Michigan and investigated the factors controlling its observed deformation. Our approach involved the following steps: (1) extracting bluff deformation rates (velocities along the line of sight of the satellite) using a stack of Sentinel-1A radar imagery in ascending acquisition geometry acquired between 2017 and 2021 and applying the Intermittent Small Baseline Subset (ISBAS) InSAR time series analysis method; (2) generating high-resolution (5 cm) elevation models and orthophotos from temporal unmanned aerial vehicle (UAV) surveys acquired in 2017, 2019, …

Kinetic And Structural Characterization Of Pseudooxynicotine Amine Oxidase From Pseudomonas Putida S16, Vishakha Choudhary

Masters Theses

Our laboratory has previously shown that nicotine oxidoreductase (NicA2), a member of the flavin-containing amine oxidase family, uses a cytochrome c protein (CycN) as its electron acceptor rather than characteristically accepted molecular oxygen. Within the Pseudomonas putida S16 genome, the nicA2 gene forms an operon with cycN and pseudooxynicotine amine oxidase (pnao), another flavin containing amine oxidase enzyme. The first two steps in the nicotine catabolism pathway are catabolized by NicA2 and Pnao. Through redox chemistry, NicA2 converts nicotine to pseudooxynicotine and Pnao converts pseudooxynicotine to 3-succinoylsemialdehyde-pyridine. In this thesis, we characterize the kinetic and structural properties of …

Probing The Equation Of State Of Neutron Stars With Heavy Ion Collisions, Om Bhadra Khanal

Dissertations

The equation of state (EOS) is a fundamental property of nuclear matter, important for studying the structure of systems as diverse as the atomic nucleus and the neutron star. Nuclear reactions, especially heavy-ion collisions in the laboratories, can produce the nuclear matter similar to those contained in neutron stars. The density and the momentum dependence of the EOS of asymmetric nuclear matter, especially the symmetry energy term, is widely unconstrained. Finding appropriate constrains, especially at higher densities of the nuclear matter, requires the development of new devices, new experimental measurements as well as advances in theoretical understanding of nuclear collisions …

Time-Dependent Photoionization Modeling Of Warm Absorbers In Active Galactic Nuclei, Dev Raj Sadaula

Dissertations

Warm absorber spectra are bound-bound and bound-free absorption features, seen in the X-ray and UV spectra from many active galactic nuclei (AGN). The widths and centroid energies of these features indicate they occur in outflowing gas moving with hundreds to thousands of km/s. Depending upon the energy and momentum of the outflow, it can affect the gas within the host galaxy. Thus, warm absorbers’ mass and energy budgets are of great interest. Estimates for these properties depend on models that connect the absorption features' observed strengths with the density, composition, and ionization state of the absorbing gas. Such models assume …

Studying The Synthesis Of 196Hg At Astrophysically Relevant Energies Through The Measurement Of Capture Reaction Cross-Sections Of (P, Γ) (P, N) And (P, Α) Reactions, Khushi Bhatt

Dissertations

Understanding the origin of all the chemical elements is an important question for the nuclear-astrophysics community. There are many unanswered questions like: What astrophysical events are responsible for the synthesis of what particular chemical elements? How many different elements were made in total? What is the abundance of each synthesized element? etc. Currently, scientists are largely depending upon theory and simulations to define nuclear and astrophysical reaction. This makes it critical to have accurate experimental nuclear physics data to input in astrophysical theoretical models. However, out of more than 20000 reactions involved in these calculations, only a very few are …

Evidence For An Early Saginaw Lobe Ice Retreat And Drainage Adjustments Across Southern Michigan, Usa, Nathan Erber

Dissertations

The Saginaw lobe of the Laurentide Ice Sheet (LIS), flowed out of Saginaw Bay, across Lower Michigan and into northern Indiana. As it retreated, the Saginaw lobe deposited the Sturgis moraine, a recessional moraine of the lobe in southern Michigan. Positioned to the west and east of the Saginaw lobe were the Lake Michigan and Huron-Erie lobes, respectively. These lobes retreated across the region asynchronously, with the Saginaw lobe retreating first. The asynchronous behavior of the lobes allowed for the Lake Michigan and Huron-Erie lobes to overprint and alter landscapes once occupied by the Saginaw lobe ice.

The Kalamazoo moraine, …

Characterization Of Mumian And Host Rock In Al-Amerat Cave, Oman., Sara Alqamshouai

Honors Theses

Mumian is a sticky black-brown material found in the Mumian cave in Wadi Al Mayh, Al Amerat, Oman. Mumian has been used for centuries as traditional medicine by the local Omani people. Though commonly ingested orally to resolve a variety of common ailments, very little is known about the Mumian material in terms of its chemical composition. The principle aim of this study is to characterize the Mumian and the host rock in terms of the mineralogy and chemical characteristics using a variety of analytic instruments, including XRD, NMR, FT-IR, XRF, and UV- VIS. A secondary goal of this study …

Mixture Of Functional Graphical Models, Qihai Liu

Dissertations

With the development of data collection technologies that use powerful monitoring devices and computational tools, many scientific fields are now obtaining more detailed and more complicatedly structured data, e.g., functional data. This leads to increasing challenges of extracting information from the large complex data. Making use of these data to gain insight into complex phenomena requires characterizing the relationships among a large number of functional variables. Functional data analysis (FDA) is a rapidly developing area of statistics for data which can be naturally viewed as a smooth curve or function. It is a method that changes the frame of data …

Mid To Late Neogene (5.9-3.7 Ma) Epeirogenic Uplift And Associated Ultramafic Volcanism, Canterbury Basin, New Zealand, Katherine Anne Dvorak

Dissertations

Cored marine sediments from Canterbury Basin Integrated Ocean Drilling Program (IODP) Expedition 317 shelf sites U1351, U1353, and upper slope Site U1352 have been resampled with emphasis on benthic foraminifera from the Late Eocene to Late Pliocene. These new data coupled with paleo water-depth and age data from the nearby Clipper-1 petroleum exploration well, are used to develop a 1-dimensional basin subsidence model for the Canterbury Basin. Our model indicates there was widespread epeirogenic uplift of 890  350m, in the mid-Neogene (5.9-3.7 million years ago), which took place during concomitant ultramafic volcanism. Close association of uplift and volcanism could …

Analysis Of The Zebrafish Olfactory System Using Immunohistochemistry And Enhanced Techniques Of Desorption Electrospray Ionization Mass Spectrometry (Desi-Ms), Tara Lynn Maser

Dissertations

Desorption electrospray ionization (DESI-MS) is an ambient ionization technique where the sample is analyzed directly from a surface with very minimal sample preparation under ambient conditions and follows ESI-like ionization mechanisms. DESI-MS has proven powerful in analyzing or imaging lipids and other small molecules directly from biological samples and even allows for subsequent histological staining and analyses. However, DESI-MS is less widely used for protein analysis due to a lack of sensitivity and the complex diversity of proteins in biological samples.

A major goal of this research has been to obtain new neurobiological knowledge by combining histology and mass spectrometry …

Study Of Deexcitation Intensities To The K-Shell In Iron 55, Eric Helgemo

Honors Theses

55Fe radioactive sources are used for x-ray calibration due to the long half-lives of 2.73 years and the optimal energies of the peaks. The source used in the experiment was generated using Western Michigan University’s Tandem Van de Graff accelerator to produce a 6 MeV proton beam which induced a 55Mn(p, n)55Fe reaction on a 10 μm 55Mn target. The emissions from this target were then measured using a silicon lithium drift x-ray detector to determine the number of instances of deexcitation through kα and kβ modes. The preliminary data discussed showed a lower relative deexcitation rate of 6.67 between …

Autonomous Eco-Driving With Traffic Light And Lead Vehicle Constraints: An Application Of Best Constrained Interpolation, Yara Hazem Mohamed Mahmoud

Masters Theses

Eco-Driving is a critical technology for improving automotive transportation efficiency. It is achieved by modifying the driving trajectory over a particular route to minimize required propulsion energy. Eco-Driving can be approached as an optimal control problem subject to driving constraints such as traffic lights and positions of other vehicles. Best interpolation in a strip is a problem in approximation theory and optimal control. The solution to this problem is a cubic spline. In this research we demonstrate the connection between Eco-Driving and best interpolation in the strip. By exploiting this connection, we are able to generate optimal Eco-Driving trajectories that …

Unsupervised Learning With Word Embeddings Captures Quiescent Knowledge From Covid-19 And Materials Science Literature, Tasnim H. Gharaibeh

Dissertations

Millions of scientific papers are produced each year and the scientific literature is continuing to grow at a head-spinning speed. Thus, massive scientific knowledge exists in solid text, but all these publications make it difficult, if not impossible, for researchers to keep in up to date with discoveries, even within a narrow scientific area. This massive amount of information also makes it difficult to find implicit and hidden connections, relationships, and dependencies within the information that may guide the direction of future research or lead to valuable new insights. So, there is a need for algorithms or models that can …

Experimental Insights Into The Origin Of Microcrystalline Calcites, Mohammed Hashim

Dissertations

A significant proportion of modern marine calcium carbonate sediments is dominated by metastable aragonite and high Mg calcite that either dissolves or stabilizes to low-Mg-calcite (calcite) or dolomite during diagenesis. Sediment dissolution and stabilization have implications for the CaCO3 budget in the ocean and carbon burial rates. Yet, the diagenetic conditions that promote each process and their relative importance are poorly understood. Further, stabilization most commonly produces calcite microcrystals that exhibit various textures and host micropores. Despite their ubiquity in the rock record, the controls on microcrystal textures remain unclear. Here, laboratory experiments were used to investigate aragonite-to-calcite stabilization as …

Parallel Resource Defined Fitness Sharing: A Study On Parallel Optimizations For Niching Algorithms, Blayne A. Rogers

Masters Theses

The exploitation of niches by genetic algorithms (GAs) is a computationally expensive, but effective, methodology for solving complex open problems and real-world applications. Niching, differentiated on the modality of sharing, casts problems in terms of the specific resources available. These concepts arise from the broader natural algorithms that encapsulate the ideas and theories used in artificial intelligence. In remediating the computational costs, a study on exploiting niche-defined parallel structures is performed in the contest of the resourcedefined fitness sharing (RFS) algorithm.

Sharing is a natural algorithm paradigm that emulates the use of resources within an environment or population. Defining these …

Instructor Selection And Use Of Virtual Field Experiences In College Geoscience Course, Kristen Foley

Masters Theses

Virtual Field Experiences (VFEs) are a growing supplement and gateway to traditional fieldwork in the geosciences. With VFEs becoming more accepted for use in college geoscience courses, how instructors find and choose VFEs for their students is critical to creating greater accessibility and future resources. VFEs that are not easily accessed by instructors may go unused, and the effort put into making them would have been wasted. This phenomenological descriptive study utilized five focus groups of college geoscience instructors in the United States. Each 1-to-1.5-hour focus group session of 3-7 participants took place on video conferencing software, which was recorded …

Irregular Orbital Domination In Graphs, Peter E. Broe

Dissertations

In recent decades, domination in graphs has become a popular area of study due in large degree to its applications to modern society and the mathematical beauty of the topic. While this area evidently began with the work of Claude Berge in 1958 and of Oystein Ore in 1962, domination did not become an active area of research until 1977 with the appearance of a survey paper by Ernest Cockayne and Stephen Hedetniemi. Since then a large number of variations of domination have surfaced and provided numerous applications to different areas of science and real-life problems. Among these variations are …

Management Of Data Brokers In Support Of Smart Community Applications, Shadha Tabatabai

Dissertations

The widespread use of smart devices has led to the Internet of Things (IoT) revolution. Big data generated by billions of devices must be analyzed to make better decisions. However, this introduces security, communication, and processing problems. To solve these problems, we develop algorithms to enhance the work of brokers. We focus our efforts on three problems.

In the first problem, brokers are used in the cloud along with Software Defined Network (SDN) switches. We formulate minimizing brokers’ load difference within a reconfiguration budget with the constraint of indivisible topics as an Integer Linear Programming (ILP) problem. We show that …

A Remote Sensing And Machine Learning-Based Approach To Forecast The Onset Of Harmful Algal Bloom (Red Tides), Moein Izadi

Dissertations

In the last few decades, harmful algal blooms (HABs, also known as “red tides”) have become one of the most detrimental natural phenomena all around the world especially in Florida’s coastal areas due to local environmental factors and global warming in a larger scale. Karenia brevis produces toxins that have harmful effects on humans, fisheries, and ecosystems. In this study, I developed and compared the efficiency of state-of-the-art machine learning models (e.g., XGBoost, Random Forest, and Support Vector Machine) in predicting the occurrence of HABs. In the proposed models, the K. brevis abundance is used as the target, and 10 …

Mercury Emissions From Iron Mining And Copper Mining In The Upper Peninsula, Michigan, Ahmed Al Rahbi

Honors Theses

The wealth in the Upper Peninsula of Michigan has been intimately linked with mining, particularly the extraction of iron and copper. Iron was deposited in the Upper Peninsula 1.9 billion years ago (Gogebic and Ranges, 2020), and copper deposits are believed to be 1.1 billion years old (Blakemore et al., 2016). In the Upper Peninsula, mercury occurs naturally in taconite (iron ore) as elemental mercury (Hg⁰), and within the copper ores as “Mercury copper amalgam” (CuHg). When elemental mercury is released from the ores, it oxidizes in the atmosphere to form inorganic mercury (Hg²⁺) (Risher, 2003; …

Surface Reconstruction Library, Jhye Tim Chi

Honors Theses

The project aims to convert an arbitrary point cloud into a triangular mesh. Point clouds are a list of 3d points that model the topology of an object. Point clouds can have various issues, such as missing or noisy data. For the scope, we had no control over point cloud generation. We were also unable to deal with underlying registration or alignment problems. Triangular meshes are a list of triangles that have 3d vertices. This aggregate list of triangles defines the reconstructed surface. Our project implementation is based on Alexander Hornung and Leif Kobbelt’s method for surface reconstruction using the …

Class Scheduling Web App, Anubhav Rawal

Honors Theses

This Scheduling Web Application in Django was built to allow a user to create a schedule for upcoming semesters. Users with appropriate privileges could upload an excel schedule to which instructors could be assigned. Additionally features included dynamic editing for admin users and viewing the main schedule for general users. Our goal was to create an application from the ground up using the Django framework to accomplish these tasks.

Quantifying Surface Water Capture By Municipal Pumping Wells In An Urban Watershed Impacted By Road Salt, Austen York

Masters Theses

The Spring Valley sub-watershed is located within the Kalamazoo Township contains Spring Valley Lake, a man-made impoundment that ultimately discharges into the Kalamazoo River. Elevated chloride levels in pumped water from the Kalamazoo Station 14 municipal wellfield, located along the shoreline of Spring Valley Lake, has resulted in less than ideal corrosivity values for the water distribution system. Specific project objectives include: (1) identifying the cause of elevated chloride, (2) assessing surface water capture by the Station 14 wellfield, and (3) characterizing of water quality in Spring Valley Lake. Monitoring along a series of sampling transects spanning the sub-watershed, focused …

Using Sedimentary Mercury Geochemistry To Evaluate The Niagara-Salina Transition, Silurian Michigan Basin, Usa, Sara Hayes

Masters Theses

The Niagara-Salina boundary in the Michigan Basin is marked by an abrupt transition from carbonates to evaporites. Though the cause is uncertain, previous work suggests the onset of Salina evaporites was driven by basin restriction, but the presence of several global carbon isotope excursions (CIE) suggest a global driver. This study builds on this discussion using two relatively new geochemical proxies - elemental mercury concentrations [Hg] and Hg isotopes.

Mercury concentrations [Hg] were measured in 88 samples from the State Kalkaska #2-15 core from 6604.03 ft to 6797.42 ft. [Hg] ranges from 0.11 to 0.62 mg/kg and [Hg]/TOC from 0.038 …

Mechanisms And Applications Of Improved Protein Analysis By Desorption Electrospray Ionization Mass Spectrometry (Desi-Ms), Roshan Javanshad

Dissertations

Electrospray ionization mass spectrometry (ESI-MS) is a soft ionization technique that allows detection of macromolecules, such as intact proteins, by the formation of multiply charged ions from solutions. Desorption electrospray ionization mass spectrometry (DESI-MS) is an ambient ionization technique that directly samples analyte from a surface during ESI-MS analysis. Although DESI-MS is highly accomplished at the analyses of metabolites, lipids, and other small molecules, it is far more limited when it comes to protein analysis. While most of the field in ambient ionization MS has moved towards primarily applications, our approach has been to explore the use of DESI-MS and …

Lxr Acts As A Differentiator In The Regulation Of Fas And G6pdh Gene Expression Under Insulin Resistant Conditions, Jaafar Hachem

Dissertations

Diabetes is a chronic disease that effects 10 percent of the world’s population and causes more than 1.5 million deaths a year and billions of dollars in associated health care cost. It can lead to very serious complications such as renal failure, liver cirrhosis, heart attack, and vision loss. The most common type of diabetes is type 2 diabetes. Type 2 diabetes arises when blood glucose levels remain chronically high due to insulin resistance. The reason for this elevation is due to the failure of insulin to allow tissues to uptake glucose causing problems in subsequent metabolic pathways. Over the …

Development Of Sensor, Sensory System And Signal Processing Algorithm For Intelligent Sensing Applications, Xingzhe Zhang

Dissertations

Sensors have been receiving significant attention in the last decade and the demand for sensory systems has increased in recent years due to the rapid growth in the field of artificial intelligence (AI). Sensors can improve people’s awareness by providing them with real-time information on the environment and their immediate health conditions. This dissertation presents the fulfilment of three main projects and focuses on the development of a sensor, a sensory system, and a sensor signal recognition system for AI applications by employing printed electronics, analog circuit design, and digital signal processing techniques.

In the first project, a multi-channel stethograph …