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Heterologous Production And Characterization Of Cell Wall Degrading Enzymes Using Plants As A Bioreactor, Eridan Orlando Rodrigues Pereira

Electronic Thesis and Dissertation Repository

Plants are wonderful living organisms. They are able to store solar energy into carbohydrates by fixing CO₂ through photosynthesis which can be subsequently harvested and used for fuel production. However, one of the major limitations for transforming these carbohydrates into liquid fuels is the recalcitrance of the plant cell wall. Although microorganisms have evolved a series of cell wall degrading enzymes to harvest efficiently this energy and are considered the main source of these biocatalysts, harnessing these microorganisms for the production of enzymes is a costly process and a major factor limiting the commercialization of lignocellulosic biomass-to-ethanol processes. The …

Thermal Adaptation Of Life History Traits In The Drosophila Melanogaster Group, Christopher James Austin

Electronic Thesis and Dissertation Repository

Thermal adaptation is typically detected by examining the tolerance to extreme temperatures in a few populations within a single life stage. However, the extent to which adaptation occurs among many different populations might depend on the tolerance of multiple life stages and the average temperature range that the population experiences. Here, I examined adaptation to local temperature conditions in four species of fruit flies, including a cosmopolitan species, Drosophila melanogaster, and three species with geographically small-sized ranges, D. nepalensis, D. sechellia, and D. mauritiana. The cosmopolitan species showed adaptation to native temperatures during the larval and adult …

Taking Tone Into Account: Cognitive Neuroscientific Investigations Of Mandarin Chinese Spoken Word Processing, Jeffrey G. Malins

Electronic Thesis and Dissertation Repository

To date, theories of how humans recognize spoken words have yet to account for tonal languages such as Mandarin Chinese. One reason for this is that we know relatively little about how native speakers of tonal languages process spoken words in the brain. This dissertation addresses this problem by examining Mandarin spoken word processing in both adult native speakers and typically developing children. In adults, functional magnetic resonance imaging (fMRI) was used to assess the extent to which the brain regions involved in processing tonal information are distinct from those involved in vowel processing (Chapter 2), while event related potentials …

Uncovering The Molecular Link Between Mir156.Spl15 And Carotenoid Accumulation In Arabidopsis, Davood Emami Meybodi

Electronic Thesis and Dissertation Repository

Carotenoid Cleavage Dioxygenases (CCDs) are an enzyme family that cleaves specific double bonds in carotenoids. MicroR156 in Arabidopsis regulates a network of genes by repressing 10 SPL genes, among which, SPL15 was found to regulate shoot branching and carotenoid accumulation. The expression of CCD1, CCD4, CCD7, CCD8, NCED2, NCED3, NCED5, NCED6, NCED9 and SPL15 was evaluated in siliques at 10 days post anthesis and in 10-day-old roots in Arabidopsis wild type, sk156 (miR156 overexpression mutant), RS105 (miR156 overexpression line), spl15 (SPL15 knockout mutant) and two 35S:SPL15 lines. Results showed that most of CCD/NCED genes were …

Metabolic Imaging Of Early Radiation-Induced Lung Injury Using Hyperpolarized 13c-Pyruvate In Rodent Lungs, Kundan Thind

Electronic Thesis and Dissertation Repository

Lung cancer is the leading cause of cancer related death. Radiation therapy is a prominent treatment method but leads to adverse consequences. Radiation-Induced Lung Injury (RILI) is the primary adverse consequence that limits further radiation therapy and develops in 5-37% of the treated patients. RILI proceeds in two distinct phases: a) early and reversible Radiation Pneumonitis (RP), and b) late and irreversible radiation fibrosis. Clinically, Dose Volume Histogram (DVH) parameters derived from radiation therapy planning stage are used to determine outcome and severity of RP but have been demonstrated to possess a very low predictive power. Computed Tomography (CT) is …

Investigation Of Sox9 Ablation On Neural Stem Cell Behaviour After Spinal Cord Injury, Stephen Mcdonald

Electronic Thesis and Dissertation Repository

After spinal cord injury neural stem cells are activated to proliferate and differentiate primarily into astrocytes, but are unable to replace lost neurons or aid in neurological recovery. Recent research shows that the transcription factor Sox9 promotes gliogenesis while inhibiting neurogenesis, and that Sox9 ablation causes improved recovery after spinal cord injury. The purpose of this study was to determine how Sox9 ablation alters neural stem cell behaviour after spinal cord injury and whether it leads to neurological improvements. We used BrdU and YFP to label and track neural stem cells and a neural stem cell-specific Sox9 knockout mouse model …

Pegylation As A Novel Tool To Investigate The Topology Of Escherichia Coli Weca, A Membrane Enzyme Involved In Lipopolysaccharide O Antigen Initiation, Stéphanie L. Lamothe

Electronic Thesis and Dissertation Repository

O-antigen, the most surface exposed moiety of bacterial lipopolysaccharide (LPS), plays several roles in pathogenicity. The biosynthesis of O-antigen starts by the formation of a phosphoanhydride bond linking a sugar phosphate with a membrane isoprenoid lipid phosphate. Two distinct families of integral membrane proteins catalyze this reaction. The protein WecA is the prototypic member of one of these families, termed the polyisoprenyl-phosphate N-acetylaminosugar-1-phosphate transferase (PNPT) family. Because the donor nucleotide sugar is only available in the cytosol, cytosolic exposed regions of WecA are expected to be critical for the catalytic activity of the enzyme. Therefore, elucidating an accurate topological …

Trophic Level Influence On Stable Hydrogen Isotopic Composition Of Bat Fur, Leslie M. Erdman

Electronic Thesis and Dissertation Repository

The effect of trophic level on the isotopic compositions of nitrogen (δ¹⁵N), carbon (δ¹³C) and oxygen (δ¹⁸O) is well documented, but the effect that trophic level has on the stable hydrogen isotopic composition of bat fur (δ²H_fur) is not known. This can have implications when assigning the locations of origin of bats in migration studies that use δ²H_fur. I hypothesized that if there is an effect of trophic level on δ²H_fur, then δ²H_fur would correlate positively with trophic level. …

Fabricating Cost-Effective Nanostructures For Biomedical Applications, Erden Ertorer

Electronic Thesis and Dissertation Repository

In this thesis we described inexpensive alternatives to fabricate nanostructures on planar substrates and provided example applications to discuss the efficiency of fabricated nanostructures.

The first method we described is forming large area systematically changing multi-shape nanoscale structures on a chip by laser interference lithography. We analyzed the fabricated structures at different substrate positions with respect to exposure time, exposure angle and associated light intensity profile. We presented experimental details related to the fabrication of symmetric and biaxial periodic nanostructures on photoresist, silicon surfaces, and ion-milled glass substrates. Behavior of osteoblasts and osteoclasts on the nanostructures was investigated. These results …

A Six Week Modified Sprint Interval Training Program Incorporating Extended Exercise Bouts Does Not Increase Maximal Cardiac Output, Alan R. Smith

Electronic Thesis and Dissertation Repository

Sprint interval training (SIT) improves maximal oxygen uptake (V̇O_2max) and exercise performance but not maximal cardiac output (Q̇_max). The brevity of typical SIT bouts (30-seconds) might hinder improvements in Q̇_max. The purpose of this study was to determine whether extended duration SIT (up to 45 second bouts) improves Q̇_max. Pre-/Post-SIT (or control) V̇O_2max, Q̇_max, maximum stroke volume (SV_max), maximum heart rate, arterial-mixed venous oxygen difference, and 5-minute run distance were measured. SIT progressed from 4x30s to 7x45s “all-out” efforts (4 min recovery) over 6 wk (3x/wk) …

Developmental Characterization Of Tissue Inhibitor Of Metalloproteinase Domain Functions In Xenopus Laevis, Michelle A. Nieuwesteeg

Electronic Thesis and Dissertation Repository

During development the extracellular matrix is cleaved and remodeled to facilitate the large-scale cell rearrangements that are necessary for processes like gastrulation, neurulation, angiogenesis and organogenesis. ECM remodeling occurs primarily through secreted enzymes called matrix metalloproteinases (MMPs). Regulation of MMP activity is achieved through the tissue inhibitor of metalloproteinases (TIMPs), a small family of secreted proteins that bind MMPs in a 1:1 manner to inhibit their activity. Although TIMPs were originally characterized based on their MMP-inhibitory activities, in vitro studies have revealed that TIMPs are multifunctional proteins, with structurally and functionally distinct N- and C-terminal domains. TIMP N-terminal domains bind …

A Quantitative Emg Assessment Of Motor Unit Recruitment In Patients With Ulnar Neuropathy, Kayla N. Ryan

Electronic Thesis and Dissertation Repository

The aim of the current study was to assess the test – retest reliability of motor unit firing rates with the use of decomposition based quantitative electromyography, and to quantify motor unit firing rates in the first dorsal interosseous of patients with ulnar neuropathy. 8 healthy subjects (mean age 35 ± 10 years) and 8 patients (mean age 48 ± 10 years) with ulnar neuropathy participated in the study. Following the acquisition of a maximum M wave, needle and surface detected EMGs were collected simultaneously during 30-second contractions performed at threshold (1-2% maximum voluntary contraction (MVC)) and 10% MVC- RMS …

Reproductive Behaviour Of Western Bean Cutworm, Striacosta Ablicosta (Lepidoptera: Noctuidae), Females Under Different Abiotic And Biotic Conditions, Joanna K. Konopka

Electronic Thesis and Dissertation Repository

The Western bean cutworm (WBC) recently expanded its range eastward from the western United States into the Great Lakes region. Little is known about the reproductive biology of this potential pest, therefore I studied the calling behaviour (the emission of the sex pheromone by females) under different biotic (age, mating status) and abiotic (temperature, relative humidity) conditions. Sexual maturation, which occurred several days after emergence, indicating that WBC is a migratory species, was not directly affected by temperature but rather by the difference between day and night temperatures. Calling behaviour was influenced by female age, but not the abiotic factors …

Expression Analysis Of Histone Acetyltransferases In Rice Under Drought Stress, Hui Fang

Electronic Thesis and Dissertation Repository

Histone acetylation is one of the vital reversible modifications in eukaryotes. Histone acetyltransferases (HATs) and histone deacetylases (HDACs) maintain the homeostasis of histone acetylation. HATs are associated with genome-wide transcriptional activation and various biological processes in response to various stresses. Drought stress causes a range of physiological and biochemical responses in plants. Eight HATs which belong to four different families (CBP, GNAT, MYST, and TAFII250 family) have been identified in rice. In this research, four OsHATs, one from each family, were chosen based on in silico domain and promoter analysis. The real-time qPCR analysis demonstrated that drought stress caused …

The Synthesis And Evaluation Of Peptide-Based Probes For The Imaging Of Rhamm Expressing Carcinoma And Glp-1r On Pancreatic Beta Cells, Ashley Esarik

Electronic Thesis and Dissertation Repository

Peptide-based probes are developed into imaging agents to target two different receptors: receptor for HA mediated motility (RHAMM) and glucagon-like peptide 1 receptor (GLP-1R).

In the first project, peptides are derived from tubulin and mimic HA (hyaluronan), the natural ligand of RHAMM. In order to develop the lead candidate peptides into imaging agents, a DOTA chelator which can coordinate a radiometal was coupled onto the lead peptides. Gallium labelling studies were performed and the labelled probes were used in in vivo mouse studies. Various analogues of two of the candidate peptides were also synthesized using bioisosteric, unnatural as well as …

Genetic And Morphological Variation Of Butterflies In Relict Habitats, Lindsay A. Crawford

Electronic Thesis and Dissertation Repository

Habitat fragmentation and loss are leading threats to global biodiversity and can alter patterns of dispersal, population dynamics, and genetics with implications for long-term species persistence. Most habitat fragmentation research has focused on recently fragmented species that historically occupied interconnected habitat patches. We know comparatively little about how naturally fragmented species may respond to habitat loss. For these species, local habitat patch quality may influence the dynamics and genetics of populations more than the structure of the surrounding landscape (e.g., degree of isolation of suitable habitat). I examined aspects of the ecology and evolution of populations inhabiting fragmented landscapes, using …

Electromechanical Delay Of The Dorsiflexors In Young And Old Women, In H. Choi

Electronic Thesis and Dissertation Repository

PURPOSE: The aim of the current study was to examine the effect on electromechanical delay (EMD) in the dorsiflexors of young and old women during maximal isometric voluntary and electrically evoked contractions, and after a bout of lengthening contractions. METHODS: Nine young (25.1±1.3 years) and nine old (68.3±6.1 years) women performed baseline isometric contractions with evoked twitches followed by a series of dynamic lengthening contractions using a Biodex multi-joint dynamometer. Maximal isometric voluntary and evoked contractions were measured to assess EMD. Time points were recorded at baseline, mid-point of the intervention, post-task termination, and during recovery at 0.5, 2, 10, …

The Plastic And Evolutionary Responses Of Fish To Anthropogenic Stressors, Ross D. Breckels

Electronic Thesis and Dissertation Repository

Ecosystems are being altered at unprecedented rates with little knowledge of the potential impacts on biodiversity. Two of the most pressing contemporary anthropogenic stressors are pollution and global warming. Species can respond to these stressors via dispersal, phenotypic plasticity, or evolutionary adaptation. Many species, especially aquatic organisms, experience ecological or physical barriers to dispersal and will therefore have to respond via phenotypic plasticity or evolutionary responses. I examined the responses of multiple traits associated with fitness in fish to pollution and increased temperature using a 2 × 2 common garden experimental design. I examined the effects of pollution on behaviour …

Insights Into The Function Of The Fatc Domain Of Saccharomyces Cervisiae Tra1 Via Mutation And Suppressor Analysis, Samantha A. Pillon

Electronic Thesis and Dissertation Repository

The regulation of transcription is an important cellular function because it is the first step in gene regulation. In Saccharomyces cerevisiae, two protein complexes, SAGA and NuA4, act as regulators of transcription. A common protein shared between these two complexes, called Tra1, regulates transcriptional activation through its interaction with gene specific transcriptional activators. Tra1 is a member of the PIKK family of proteins, which are characterized by FAT, PI3K and FATC domains. The FATC domain encompasses the terminal 33-35 residues of the protein. Two mutations within the FATC domain, tra1-L3733A and tra1-F3744A, result in slow growth under stress …

The Effect Of Low And High Carbohydrate Diets On Pulmonary Oxygen Uptake And Muscle Deoxygenation Kinetics During Exercise Transitions Into The Heavy-Intensity Domain, John Leckie

Electronic Thesis and Dissertation Repository

The purpose of this study was to determine the effects of a high carbohydrate (HCHO) and low carbohydrate (LCHO) diet on the adjustment of pulmonary oxygen (O₂) uptake ( ) and muscle deoxygenation ([HHb]) during transitions to heavy intensity exercise. Young, healthy, male subjects aged (24+/-3) underwent a 4 day LCHO followed immediately by a 4 day HCHO diet, with each diet preceded by a glycogen depletion protocol. This protocol was designed to alter PDH activity. Subjects completed 3 step transitions to a work rate corresponding to 35% of the difference between their lactate threshold and _peak for …

The Effects Of Extrinsic And Intrinsic Factors On The Reproductive Biology Of Male Western Bean Cutworm Moths, Striacosta Albicosta (Smith), Jasmine Farhan

Electronic Thesis and Dissertation Repository

Pheromones are important in the mating systems of nocturnal moths as they are relied on to find and/or assess mates. Extrinsic and intrinsic factors have been shown to influence female emission of and male response to pheromones. My thesis focuses on the reproductive biology of males of the western bean cutworm, Striacosta albicosta, a pest of beans and corn that has recently began expanding its range eastwardly. I conducted a field-based experiment to determine the effects of extrinsic factors on pheromone trap catches. I also conducted laboratory based mating experiments to determine the effect of male age on acceptance …

An Autoethnographical Tapestry Of Feminist Reflection On My Journey Of A Fitness Model Physique, Stephanie A. Paplinskie

Electronic Thesis and Dissertation Repository

Weight training and fitness competitions are increasingly popular activities for many women seeking an aesthetically fit body. This thesis entails a critical reflection of the various factors surrounding my personal decision to partake in body sculpting, examining how these factors parallel the experience of other women in the fitness industry. Using a feminist theoretical framework and autoethnography, a history of feminist theory is incorporated to demonstrate some of the various perspectives surrounding women bodies. Two challenges for women are discussed in this paper: i) the fear of fat, and how it is connected to a woman’s initial decision to attend …

Characterization Of Staphylococcus Aureus Lipase, Vithooshan Vijayakumaran

Electronic Thesis and Dissertation Repository

USA300, a strain of community-associated methicillin resistant Staphylococcus aureus (CA-MRSA), has become prevalent in the community. Colonization of human skin requires mechanisms that allow this bacterium to overcome the innate immune defenses on the skin, including secretion of antimicrobial lipids. Antimicrobial lipids inhibit S. aureus growth and induce the staphylococcal proteolytic cascade, producing aureolysin (Aur) which processes the lipase glycerol ester hydrolase (Geh). Nearly all S. aureus strains secrete Geh, yet little information exists concerning its function. Using purified Aur and Geh we confirm that aureolysin processes proGeh to Geh. We then confirmed that geh was required for lipase activity …

Role Of Branched-Chain Amino Acid Transporters In Staphylococcus Aureus Virulence, Sameha Omer

Electronic Thesis and Dissertation Repository

Branched-chain amino acids (BCAAs) act as effector molecules that signal a global transcriptional regulator, CodY, to regulate virulence factors in nutrient depleted environments. Staphylococcus aureus contains three putative BCAA transporters (BrnQ1, BrnQ2, BrnQ3) whose role in BCAA uptake is unknown. We hypothesize that BrnQ transporters are involved in BCAA uptake and contribute to virulence in S. aureus by modulating CodY activity. Results from radioactive uptake assays indicate that BrnQ1 is the predominant BrnQ transporter of isoleucine, valine and leucine. Meanwhile, BrnQ2 is more specific for isoleucine. Furthermore, only the lack of BrnQ1 hinders growth of S. aureus in chemically-defined media …

Adjustment Of Pulmonary O2 Uptake, Muscle Deoxygenation And Metabolism During Moderate-Intensity Exercise Transitions Initiated From Low And Elevated Baseline Metabolic Rates, Joshua P. Nederveen

Electronic Thesis and Dissertation Repository

When instantaneous step-wise transitions within the moderate intensity domain are initiated from elevated metabolic rates, the rate of pulmonary oxygen uptake (V̇O_2p) adjustment is slowed, and the V̇O_2p gain (ΔV̇O_2p /ΔWR) is greater. This study sought to determine the relationship between V̇O_2p kinetics and metabolic activity and energy status during step transitions from low and elevated metabolic rates within the moderate intensity domain. Ten young men completed six double-step constant load cycling bouts, consisting of step-wise transitions from 20 W to 45% θ_L and 45% θ_L [lower step (LS)] to 90% θ_{L …}

Neural Circuits Involved In Mental Arithmetic: Evidence From Customized Arithmetic Training, Christian Battista

Electronic Thesis and Dissertation Repository

An arithmetic training study was conducted using a novel paradigm known as Customized Arithmetic Training (CAT). Using the CAT system, self-reports obtained from the participants were used to generate individually tailored problem sets. These problem sets balanced strategy use such that each participant started with an equal amount of problems solved by fact retrieval (e.g., 2 + 2 = 4) and an equal amount of problems solved by procedural calculation (e.g., 34 + 37). Following the training period, participants solved trained and untrained problems from their customized arithmetic sets while undergoing an fMRI scan, after which they again provided self-reported …

Testing The Template Hypothesis Of Vocal Learning In Songbirds., Adriana Diez

Electronic Thesis and Dissertation Repository

The auditory forebrain regions NCM and CMM of songbirds are associated with perception and complex auditory processing. Expression of the immediate-early gene ZENK varies in response to different sounds. Two hypotheses are proposed for this. First, ZENK may reflect access to a representation of song memories. Second, ZENK may reflect attention. I tested these hypotheses by measuring ZENK in response to tutored heterospecific or isolate songs compared to non-tutored wild-type song. Young zebra finch females were exposed to different tutoring conditions and later exposed to different playbacks, and the expression of ZENK in CMM and NCM measured. ZENK responses varied …

Role Of Adenylyl Cyclase S674 In Central And Forearm Vasomotor Control, James Corkal

Electronic Thesis and Dissertation Repository

This study examined the cardiac and vasomotor responses to submaximal handgrip exercise and beta-adrenergic control in carriers (n = 6) and non-carriers (n = 4) of a genetic variant of adenylyl cyclase 6 (AC S674). Rhythmic handgrip contractions (1 minute bout; 2 second contraction-relaxation period) were performed at three different intensities (20, 40, and 60% of maximal voluntary contraction force) to test the vasodilatory response to exercise. Additionally, two 5 minute infusions of isoproterenol (0.01 and 0.02 µg·kg^-1·min^-1 diluted in 5% dextrose) and one 10 minute infusion of propranolol (0.1 mg·kg^-1 diluted in 0.9% saline) were …

The Interaction Of The Human Adenovirus E1a Protein With The Human Dref Transcription Factor, Kris M. James

Electronic Thesis and Dissertation Repository

The human adenovirus (HAdV) E1A protein is the first protein produced post-HAdV infection, and serves two main functions. The first is to modulate host and viral transcription. The second is to induce host cell cycle progression to S phase, to promote an optimal environment for viral replication. E1A performs its functions by binding and manipulating over 50 cellular factors. Interestingly, I found that E1A is capable of interacting with the poorly characterized human DNA replication-related element-binding factor (hDREF). hDREF is a transcription factor associated with the expression of several genes related to the cell cycle. I hypothesized that the interaction …

Cortical Cannabinoid Modulation Of Subcortical Dopamine Activity: Implications For Emotional Processing, Brittany Draycott

Electronic Thesis and Dissertation Repository

Humans receive countless sensory inputs from the outside world to which they assign a certain level of emotional significance. However, there are times when an individual may assign an abnormally high level of emotional salience to an otherwise non-significant event, resulting in an inappropriate allocation of attention as seen in the hallucinations and psychosis associated with schizophrenia. Several brain regions are involved in this emotional processing, including the medial prefrontal cortex (mPFC) and the ventral tegmental area (VTA). We have previously shown that activation of mPFC cannabinoid (CB1) receptors in rats causes a potentiated fear response to a normally non-salient …