Natural Resources and Conservation Commons^™

Insights From Characterizing Extinct Human Gut Microbiomes, Raul Y. Tito, Dan Knights, Jessica Metcalf, Alexandra J. Obregon-Tito, Lauren Cleeland, Fares Najar, Bruce Roe, Karl Reinhard, Kristin Sobolik, Samuel Belknap, Morris Foster, Paul Spicer, Rob Knight, Cecil M. Lewis, Jr.

School of Natural Resources: Faculty Publications

In an effort to better understand the ancestral state of the human distal gut microbiome, we examine feces retrieved from archaeological contexts (coprolites). To accomplish this, we pyrosequenced the 16S rDNA V3 region from duplicate coprolite samples recovered from three archaeological sites, each representing a different depositional environment: Hinds Cave (~8000 years B.P.) in the southern United States, Caserones (1600 years B.P.) in northern Chile, and Rio Zape in northern Mexico (1400 years B.P.). Clustering algorithms grouped samples from the same site. Phyletic representation was more similar within sites than between them. A Bayesian approach to source-tracking was used to …

Evolutionary And Practical Implications Of Pseudo-Estrus Behavior In Florida Panthers (Puma Concolor Coryi), John F. Benson, Mark A. Lotz, E. Darrell Land, Dave P. Onorato

School of Natural Resources: Faculty Publications

Estrus behavior by females for reasons other than reproduction (pseudo-estrus) has been reported in species of primates and felids, and alternative hypotheses have been put forth to explain its evolution and function. We observed 3 separate cases of pseudo-estrus behavior by 2 Puma concolor coryi (Florida Panther) females while they were nursing young (old) kittens. We used VHF and GPS telemetry data, genetic pedigree analysis, and visual observations to provide insight into the evolutionary and practical implications of this behavior for Panthers. We suggest that female Panthers likely consort with males while nursing kittens to maintain amicable relations with these …

Comparative Transcriptome Analysis Of Two Olive Cultivars In Response To Nacl-Stress, Christos Bazakos, Maria E. Manioudaki, Ioannis Therios, Demetrios Voyiatzis, Dimitris Kafetzopoulos, Tala Awada, Panagiotis Kalaitzis

School of Natural Resources: Faculty Publications

Background: Olive (Olea europaea L.) cultivation is rapidly expanding and low quality saline water is often used for irrigation. The molecular basis of salt tolerance in olive, though, has not yet been investigated at a system level. In this study a comparative transcriptomics approach was used as a tool to unravel gene regulatory networks underlying salinity response in olive trees by simulating as much as possible olive growing conditions in the field. Specifically, we investigated the genotype-dependent differences in the transcriptome response of two olive cultivars, a salt-tolerant and a salt-sensitive one.

Methodology/Principal Findings: A 135-day long …

Flow, Nutrients, And Light Availability Influence Neotropical Epilithon Biomass And Stoichiometry, Tyler J. Kohler, Thomas N. Heatherly Ii, Rana W. El-Sabaawi, Eugenia Zandona, Michael C. Marshall, Alexander S. Flecker, Catherine M. Pringle, David N. Reznick, Steven A. Thomas

School of Natural Resources: Faculty Publications

Light, nutrient availability, and flow are strong factors controlling the elemental composition and biomass of epilithon in temperate stream ecosystems. However, comparatively little is known about these relationships in tropical streams. We investigated how gradients of light and nutrient availability, seasonality, and habitat influenced epilithon biomass, chlorophyll a, and nutrient ratios in montane streams of Trinidad, West Indies. We sampled 4 focal tributaries of a single river, 2 of which had canopies experimentally thinned, every other month over a 2-y period to observe temporal dynamics and light effects on epilithon. We also sampled 18 sites across Trinidad’s Northern Range Mountains …

Denitrification By Sulfur-Oxidizing Bacteria In A Eutrophic Lake, Amy J. Burgin, Stephen K. Hamilton, Stuart E. Jones, Jay T. Lennon

School of Natural Resources: Faculty Publications

Understanding the mechanistic controls of microbial denitrification is of central importance to both environmental microbiology and ecosystem ecology. Loss of nitrate (NO₃ ⁻) is often attributed to carbon-driven (heterotrophic) denitrification. However, denitrification can also be coupled to sulfur (S) oxidation by chemolithoautotrophic bacteria. In the present study, we used an in situ stable isotope (¹⁵NO₃ ⁻) tracer addition in combination with molecular approaches to understand the contribution of sulfur-oxidizing bacteria to the reduction of NO3 ⁻ in a eutrophic lake. Samples were incubated across a total dissolved sulfide (H₂S) gradient (2 to …

The General Ensemble Biogeochemical Modeling System (Gems) And Its Applications To Agricultural Systems In The United States, Shuguang Liu, Zhengxi Tan, Mingshi Chen, Jinxun Liu, Anne Wein, Zhengpeng Li, Shengli Huang, Jennifer Oeding, Claudia Young, Shashi Verma, Andrew Suyker, Stephen Faulkner, Gregory W. Mccarty

School of Natural Resources: Faculty Publications

The General Ensemble Biogeochemical Modeling System (GEMS) (Liu, 2009; Liu et al., 2004c) was developed to integrate well-established ecosystem biogeochemical models with various spatial databases for the simulations of biogeochemical cycles over large areas. Figure 18.1 shows the overall structure of the GEMS. Some of the key components are described below.

General Ensemble Biogeochemical

Modeling System (GEMS) 310

Multiple Underlying Biogeochemical Models 310

Monte Carlo Simulations 311

Model Inputs: Management Practices and Others 311

Model Outputs 311

Data Assimilation 311

Simulation of Agricultural Practices: EDCM as an Example 312

Net Primary Production (NPP) and Improvements in Crop Genetics and Agronomics …

National Climate Assessment Technical Report On The Impacts Of Climate And Land Use And Land Cover Change, Thomas Loveland, Rezaul Mahmood, Toral Patel-Weynand, Krista Karstensen, Kari Beckendorf, Norman Bliss, Andrew Carlton

School of Natural Resources: Faculty Publications

This technical report responds to the recognition by the U.S. Global Change Research Program (USGCRP) and the National Climate Assessment (NCA) of the importance of understanding how land use and land cover (LULC) affects weather and climate variability and change and how that variability and change affects LULC. Current published, peer-reviewed, scientific literature and supporting data from both existing and original sources forms the basis for this report’s assessment of the current state of knowledge regarding land change and climate interactions. The synthesis presented herein documents how current and future land change may alter environment processes and in turn, how …

Interior Least Tern Powerline Collision On The Lower Platte River, Lauren R. Dinan, Joel G. Jorgensen, Mary Bomberger Brown

School of Natural Resources: Faculty Publications

Collisions with electrical powerlines are a well-known documented cause of avian mortality (Avian Power Line Interaction Committee [APLIC] 1994, Savereno et al. 1996). Mortality caused by collisions with powerlines can be an important concern for many bird species, but is a serious conservation problem for threatened and endangered species because any mortality can have biological and legal ramifications (Janss 2000). Loss of individuals, particularly breeding adults, from an already small population may impede a species’ recovery by reducing reproduction and recruitment into the breeding population. The death of an individual from a threatened or endangered species as a result of …

Fish Assemblage Shifts And Population Dynamics Of Smallmouth Bass (Micropterus Dolomieu) In The Beaver Archipelago, Northern Lake Michigan: A Comparison Between Historical And Recent Time Periods Amidst Ecosystem Changes., Mark A. Kaemingk, Tracy L. Galarowicz, John A. Clevenger, David F. Clapp, Herbert L. Lenon

School of Natural Resources: Faculty Publications

The ecological and economic importance of Great Lakes nearshore areas and the paucity of information on nearshore Lake Michigan fish assemblages prompted us to document changes that occurred from a historical time period (1969–1972, 1975, 1977, and 1984) to a recent period (2005–2008) in a nearshore northern Lake Michigan (Beaver Archipelago) fish assemblage, with an emphasis on smallmouth bass Micropterus dolomieu. From historical to recent periods, the Beaver Archipelago fish assemblage shifted from predominantly brown bullheads Ameiurus nebulosus to predominantly smallmouth bass. Relative abundance of brown bullheads and white suckers Catostomus commersonii declined from historical to recent time periods, as …

Priority Effects Among Young-Of-The-Year Fish: Reduced Growth Of Bluegill Sunfish (Lepomis Macrochirus) Caused By Yellow Perch (Perca Flavescens)?, Mark A. Kaemingk, Jeffrey C. Jolley, David W. Willis, Steven R. Chipps

School of Natural Resources: Faculty Publications

1. When available, Daphnia spp. are often preferred by age-0 yellow perch and bluegill sunfish because of energetic profitability. We hypothesised that predation by age-0 yellow perch could lead to a midsummer decline (MSD) of Daphnia spp. and that priority effects may favour yellow perch because they hatch before bluegill, allowing them to capitalise on Daphnia spp. prior to bluegill emergence.

2. Data were collected from 2004 to 2010 in Pelican Lake, Nebraska, U.S.A. The lake experienced a prolonged MSD in all but 1 year (2005), generally occurring within the first 2 weeks of June except in 2008 and 2010 …

Phosphorus In Phoenix: A Budget And Spatial Representation Of Phosphorus In An Urban Ecosystem, Genevieve S. Metson, Rebecca L. Hale, David M. Iwaniec, Elizabeth M. Cook, Jessica R. Corman, Christopher S. Galletti, Daniel L. Childers

School of Natural Resources: Faculty Publications

As urban environments dominate the landscape, we need to examine how limiting nutrients such as phosphorus (P) cycle in these novel ecosystems. Sustainable management of P resources is necessary to ensure global food security and to minimize freshwater pollution. We used a spatially explicit budget to quantify the pools and fluxes of P in the Greater Phoenix Area in Arizona, USA, using the boundaries of the Central Arizona– Phoenix Long-Term Ecological Research site. Inputs were dominated by direct imports of food and fertilizer for local agriculture, while most outputs were small, including water, crops, and material destined for recycling. Internally, …

Monitoring Live Fuel Moisture Using Soil Moisture And Remote Sensing Proxies, Yi Qi, Philip E. Dennison, Jessica Spencer, David Riano

School of Natural Resources: Faculty Publications

Live fuel moisture (LFM) is an important fuel property controlling fuel ignition and fire propagation. LFM varies seasonally, and is controlled by precipitation, soil moisture, evapotranspiration, and plant physiology. LFM is typically sampled manually in the field, which leads to sparse measurements in space and time. Use of LFM proxies could reduce the need for field sampling while potentially improving spatial and temporal sampling density. This study compares soil moisture and remote sensing data to field-sampled LFM for Gambel oak (Quercus gambelii Nutt) and big sagebrush (Artemisia tridentata Nutt) in northern Utah. Bivariate linear regression models were constructed …

Bats In And Around Structures, Dennis M. Ferraro, Lisa Pennisi, Scott E. Hygnstrom, Stephen M. Vantassel

School of Natural Resources: Faculty Publications

No abstract provided.

The Collaborative Forest Landscape Restoration Program: A History And Overview Of The First Projects, Courtney A. Schultz, Theresa Jedd

School of Natural Resources: Faculty Publications

No abstract provided.

Predation, Herbivory, And Parasitism, Alison N.P. Stevens

School of Natural Resources: Faculty Publications

No abstract provided.

Planet Protectors, A.P. Stevens

School of Natural Resources: Faculty Publications

No abstract provided.

Dynamics Of Predation, Alison N.P. Stevens

School of Natural Resources: Faculty Publications

No abstract provided.

Factors Affecting Global Climate, Alison N.P. Stevens

School of Natural Resources: Faculty Publications

No abstract provided.

Estimating The Abundance Of Long-Billed Curlews In Nebraska, Cory J. Gregory, Stephen J. Dinsmore, Larkin A. Powell, Joel G. Jorgensen

School of Natural Resources: Faculty Publications

Long-billed Curlews (Numenius americanus) are shorebirds of high conservation concern in North America. Populations have de­clined in the last 150 yr primarily due to habitat loss and conversion. We conducted a 2-yr study to estimate the density and state­wide abundance of breeding Long-billed Curlews in Nebraska during 2008 and 2009. Surveys were conducted during the prenest­ing period in April when Long-billed Curlews were likely to be detected. We used a simple random sample of roadside survey routes (N = 39), each consisting of 40 5-min point-counts at 800-m intervals. We modeled detection probability and found that wind …

2012 Interior Least Tern And Piping Plover Monitoring, Research, Management, And Outreach Report For The Lower Platte River, Nebraska, Mary Bomberger Brown, Joel G. Jorgensen, Lauren R. Dinan

School of Natural Resources: Faculty Publications

This document reports on our monitoring, research, management, and outreach activities during the past 12 months (2012). We prepared it to inform our partners, cooperating agencies, funding sources, and other interested parties of our activities and to provide a preliminary summary of our results.

The Lower Platte River and its major tributaries provide important nesting habitat for two state and federally protected bird species, the Interior Least Tern (Sternula antillarum athalassos) and Piping Plover (Charadrius melodus). The Tern and Plover Conservation Partnership (TPCP), based at the University of Nebraska-School of Natural Resources, and the Nongame Bird …

Use Of Partially Fenced Fields To Reduce Deer Damage To Corn, Aaron M. Hildreth, Scott E. Hygnstrom, Erin E. Blankenship, Kurt C. Vercauteren

School of Natural Resources: Faculty Publications

White-tailed deer (Odocoileus virginianus) damage agricultural crops, often leading to significant economic losses for farmers. We used poly-mesh fence with wings to separate good deer cover from agricultural fields where crop damage by deer occurred primarily along this edge. In these cases, complete enclosure of the field with fencing may be unnecessary. The design used a 2.13-m-high polypropylene mesh fence erected along the wooded edge of a field with either 50-m or 150-m wings extending perpendicular from the fence line and wooded habitat. Fences reduced deer damage in cornfields 13.5% (F_1,6= _∞, P < 0.001). Average yield in fenced fields (10,211 kg/ha) was 1,708 kg/ha greater than in control fields, which, at US$0.155/kg, equals a net gain of US$265/ha. We found no difference in damage between fences with 50-m and 150-m wings (F …