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Old Dominion University

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Full-Text Articles in Physical Sciences and Mathematics

Outlier Profiles Of Atomic Structures Derived From X-Ray Crystallography And From Cryo-Electron Microscopy, Lin Chen, Jing He, Angelo Facchiano Jan 2020

Outlier Profiles Of Atomic Structures Derived From X-Ray Crystallography And From Cryo-Electron Microscopy, Lin Chen, Jing He, Angelo Facchiano

Computer Science Faculty Publications

Background: As more protein atomic structures are determined from cryo-electron microscopy (cryo-EM) density maps, validation of such structures is an important task. Methods: We applied a histogram-based outlier score (HBOS) to six sets of cryo-EM atomic structures and five sets of X-ray atomic structures, including one derived from X-ray data with better than 1.5 Å resolution. Cryo-EM data sets contain structures released by December 2016 and those released between 2017 and 2019, derived from resolution ranges 0–4 Å and 4–6 Å respectively. Results: The distribution of HBOS values in five sets of X-ray structures show that HBOS is sensitive distinguishing …

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Should We Expect Each Year In The Next Decade (2019–28) To Be Ranked Among The Top 10 Warmest Years Globally?, Anthony Arguez, Shannan Hurley, Anand Inamdar, Laurel Mahoney, Ahira Sanchez-Lugo, Lilian Yang Jan 2020

Should We Expect Each Year In The Next Decade (2019–28) To Be Ranked Among The Top 10 Warmest Years Globally?, Anthony Arguez, Shannan Hurley, Anand Inamdar, Laurel Mahoney, Ahira Sanchez-Lugo, Lilian Yang

Political Science & Geography Faculty Publications

Annual rankings of global temperature are widely cited by media and the general public, not only to place the most recent year in a historical perspective, but also as a first-order metric of recent climate change that is easily digestible by the general public. Moreover, all annual NOAAGlobalTemp anomalies from 1880 (the earliest reading available) through the mid-1970s are well below anomalies of the top 10 warmest years in Table 1, even when considering the uncertainty of the NOAAGlobalTemp time series values. While we expect the algorithm's performance to be largely independent of any changes made to the way that …

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Automated Trading Systems Statistical And Machine Learning Methods And Hardware Implementation: A Survey, Boming Huang, Yuziang Huan, Li Da Xu, Lirong Zheng, Zhuo Zou Jan 2019

Automated Trading Systems Statistical And Machine Learning Methods And Hardware Implementation: A Survey, Boming Huang, Yuziang Huan, Li Da Xu, Lirong Zheng, Zhuo Zou

Information Technology & Decision Sciences Faculty Publications

Automated trading, which is also known as algorithmic trading, is a method of using a predesigned computer program to submit a large number of trading orders to an exchange. It is substantially a real-time decision-making system which is under the scope of Enterprise Information System (EIS). With the rapid development of telecommunication and computer technology, the mechanisms underlying automated trading systems have become increasingly diversified. Considerable effort has been exerted by both academia and trading firms towards mining potential factors that may generate significantly higher profits. In this paper, we review studies on trading systems built using various methods and …

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An Investigation Of Atomic Structures Derived From X-Ray Crystallography And Cryo-Electron Microscopy Using Distal Blocks Of Side-Chains, Lin Chen, Jing He, Salim Sazzed, Rayshawn Walker Jan 2018

An Investigation Of Atomic Structures Derived From X-Ray Crystallography And Cryo-Electron Microscopy Using Distal Blocks Of Side-Chains, Lin Chen, Jing He, Salim Sazzed, Rayshawn Walker

Computer Science Faculty Publications

Cryo-electron microscopy (cryo-EM) is a structure determination method for large molecular complexes. As more and more atomic structures are determined using this technique, it is becoming possible to perform statistical characterization of side-chain conformations. Two data sets were involved to characterize block lengths for each of the 18 types of amino acids. One set contains 9131 structures resolved using X-ray crystallography from density maps with better than or equal to 1.5 Å resolutions, and the other contains 237 protein structures derived from cryo-EM density maps with 2-4 Å resolutions. The results show that the normalized probability density function of block …

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Precise Measurement Of The Neutron Magnetic Form Factor Gnm In The Few-Gev² Region, Clas Collaboration, J. Lachniet, H. Bagdasaryan, S. Bültmann, N. Kalantarians, G. E. Dodge, T. A. Forest, G. Gavalian, C. E. Hyde-Wright, A. Klien, S. E. Kuhn, M. R. Niroula, R. A. Niyazov, L. M. Qin, L. B. Weinstein, J. Zhang Jan 2009

Precise Measurement Of The Neutron Magnetic Form Factor Gnm In The Few-Gev² Region, Clas Collaboration, J. Lachniet, H. Bagdasaryan, S. Bültmann, N. Kalantarians, G. E. Dodge, T. A. Forest, G. Gavalian, C. E. Hyde-Wright, A. Klien, S. E. Kuhn, M. R. Niroula, R. A. Niyazov, L. M. Qin, L. B. Weinstein, J. Zhang

Physics Faculty Publications

The neutron elastic magnetic form factor was extracted from quasielastic electron scattering on deuterium over the range Q2 = 1.0–4.8  GeV2 with the CLAS detector at Jefferson Lab. High precision was achieved with a ratio technique and a simultaneous in situ calibration of the neutron detection efficiency. Neutrons were detected with electromagnetic calorimeters and time-of-flight scintillators at two beam energies. The dipole parametrization gives a good description of the data

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